scholarly journals Semantic Segmentation Deep Learning for Extracting Surface Mine Extents from Historic Topographic Maps

2020 ◽  
Vol 12 (24) ◽  
pp. 4145
Author(s):  
Aaron E. Maxwell ◽  
Michelle S. Bester ◽  
Luis A. Guillen ◽  
Christopher A. Ramezan ◽  
Dennis J. Carpinello ◽  
...  
Keyword(s):  
United States ◽  
Deep Learning ◽  
Model Performance ◽  
Semantic Segmentation ◽  
Topographic Maps ◽  
Commission Error ◽  
Dice Coefficient ◽  
Surface Mine ◽  
Segmentation Methods ◽  
Historic Record

Historic topographic maps, which are georeferenced and made publicly available by the United States Geological Survey (USGS) and the National Map’s Historical Topographic Map Collection (HTMC), are a valuable source of historic land cover and land use (LCLU) information that could be used to expand the historic record when combined with data from moderate spatial resolution Earth observation missions. This is especially true for landscape disturbances that have a long and complex historic record, such as surface coal mining in the Appalachian region of the eastern United States. In this study, we investigate this specific mapping problem using modified UNet semantic segmentation deep learning (DL), which is based on convolutional neural networks (CNNs), and a large example dataset of historic surface mine disturbance extents from the USGS Geology, Geophysics, and Geochemistry Science Center (GGGSC). The primary objectives of this study are to (1) evaluate model generalization to new geographic extents and topographic maps and (2) to assess the impact of training sample size, or the number of manually interpreted topographic maps, on model performance. Using data from the state of Kentucky, our findings suggest that DL semantic segmentation can detect surface mine disturbance features from topographic maps with a high level of accuracy (Dice coefficient = 0.902) and relatively balanced omission and commission error rates (Precision = 0.891, Recall = 0.917). When the model is applied to new topographic maps in Ohio and Virginia to assess generalization, model performance decreases; however, performance is still strong (Ohio Dice coefficient = 0.837 and Virginia Dice coefficient = 0.763). Further, when reducing the number of topographic maps used to derive training image chips from 84 to 15, model performance was only slightly reduced, suggesting that models that generalize well to new data and geographic extents may not require a large training set. We suggest the incorporation of DL semantic segmentation methods into applied workflows to decrease manual digitizing labor requirements and call for additional research associated with applying semantic segmentation methods to alternative cartographic representations to supplement research focused on multispectral image analysis and classification.

scholarly journals Self-Attention in Reconstruction Bias U-Net for Semantic Segmentation of Building Rooftops in Optical Remote Sensing Images

2021 ◽  
Vol 13 (13) ◽  
pp. 2524
Author(s):  
Ziyi Chen ◽  
Dilong Li ◽  
Wentao Fan ◽  
Haiyan Guan ◽  
Cheng Wang ◽  
...  
Keyword(s):  
Remote Sensing ◽  
Deep Learning ◽  
Semantic Segmentation ◽  
Extraction Methods ◽  
The Self ◽  
Optical Remote Sensing ◽  
Building Extraction ◽  
Learning Models ◽  
Remote Sensing Images ◽  
Segmentation Methods

Deep learning models have brought great breakthroughs in building extraction from high-resolution optical remote-sensing images. Among recent research, the self-attention module has called up a storm in many fields, including building extraction. However, most current deep learning models loading with the self-attention module still lose sight of the reconstruction bias’s effectiveness. Through tipping the balance between the abilities of encoding and decoding, i.e., making the decoding network be much more complex than the encoding network, the semantic segmentation ability will be reinforced. To remedy the research weakness in combing self-attention and reconstruction-bias modules for building extraction, this paper presents a U-Net architecture that combines self-attention and reconstruction-bias modules. In the encoding part, a self-attention module is added to learn the attention weights of the inputs. Through the self-attention module, the network will pay more attention to positions where there may be salient regions. In the decoding part, multiple large convolutional up-sampling operations are used for increasing the reconstruction ability. We test our model on two open available datasets: the WHU and Massachusetts Building datasets. We achieve IoU scores of 89.39% and 73.49% for the WHU and Massachusetts Building datasets, respectively. Compared with several recently famous semantic segmentation methods and representative building extraction methods, our method’s results are satisfactory.

scholarly journals Real-Time Semantic Segmentation with Dual Encoder and Self-Attention Mechanism for Autonomous Driving

Sensors ◽  
2021 ◽  
Vol 21 (23) ◽  
pp. 8072
Author(s):  
Yu-Bang Chang ◽  
Chieh Tsai ◽  
Chang-Hong Lin ◽  
Poki Chen
Keyword(s):  
Deep Learning ◽  
Real Time ◽  
Network Architecture ◽  
Semantic Segmentation ◽  
Autonomous Driving ◽  
Attention Mechanism ◽  
Trade Off ◽  
Segmentation Methods ◽  
General Semantic ◽  
Deep Learning Model

As the techniques of autonomous driving become increasingly valued and universal, real-time semantic segmentation has become very popular and challenging in the field of deep learning and computer vision in recent years. However, in order to apply the deep learning model to edge devices accompanying sensors on vehicles, we need to design a structure that has the best trade-off between accuracy and inference time. In previous works, several methods sacrificed accuracy to obtain a faster inference time, while others aimed to find the best accuracy under the condition of real time. Nevertheless, the accuracies of previous real-time semantic segmentation methods still have a large gap compared to general semantic segmentation methods. As a result, we propose a network architecture based on a dual encoder and a self-attention mechanism. Compared with preceding works, we achieved a 78.6% mIoU with a speed of 39.4 FPS with a 1024 × 2048 resolution on a Cityscapes test submission.

scholarly journals Semantic segmentation of vertebrate microfossils from computed tomography data using a deep learning approach

2021 ◽  
Vol 40 (2) ◽  
pp. 163-173
Author(s):  
Yemao Hou ◽  
Mario Canul-Ku ◽  
Xindong Cui ◽  
Rogelio Hasimoto-Beltran ◽  
Min Zhu
Keyword(s):  
Deep Learning ◽  
Evolutionary Biology ◽  
Semantic Segmentation ◽  
Stratigraphic Correlation ◽  
Segmentation Method ◽  
Research Areas ◽  
Performance Metric ◽  
Segmentation Methods ◽  
Ct Data ◽  
Tomography Data

Abstract. Vertebrate microfossils have broad applications in evolutionary biology and stratigraphy research areas such as the evolution of hard tissues and stratigraphic correlation. Classification is one of the basic tasks of vertebrate microfossil studies. With the development of techniques for virtual paleontology, vertebrate microfossils can be classified efficiently based on 3D volumes. The semantic segmentation of different fossils and their classes from CT data is a crucial step in the reconstruction of their 3D volumes. Traditional segmentation methods adopt thresholding combined with manual labeling, which is a time-consuming process. Our study proposes a deep-learning-based (DL-based) semantic segmentation method for vertebrate microfossils from CT data. To assess the performance of the method, we conducted extensive experiments on nearly 500 fish microfossils. The results show that the intersection over union (IoU) performance metric arrived at least 94.39 %, meeting the semantic segmentation requirements of paleontologists. We expect that the DL-based method could also be applied to other fossils from CT data with good performance.

scholarly journals Deep-Learning-Based Gridded Downscaling of Surface Meteorological Variables in Complex Terrain. Part I: Daily Maximum and Minimum 2-m Temperature

2020 ◽  
Vol 59 (12) ◽  
pp. 2057-2073
Author(s):  
Yingkai Sha ◽  
David John Gagne II ◽  
Gregory West ◽  
Roland Stull
Keyword(s):  
United States ◽  
Deep Learning ◽  
Expert Knowledge ◽  
Semantic Segmentation ◽  
Absolute Error ◽  
Fine Tuning ◽  
Daily Maximum ◽  
Fine Grained ◽  
Level Performance ◽  
Maximum Minimum

AbstractMany statistical downscaling methods require observational inputs and expert knowledge and thus cannot be generalized well across different regions. Convolutional neural networks (CNNs) are deep-learning models that have generalization abilities for various applications. In this research, we modify UNet, a semantic-segmentation CNN, and apply it to the downscaling of daily maximum/minimum 2-m temperature (TMAX/TMIN) over the western continental United States from 0.25° to 4-km grid spacings. We select high-resolution (HR) elevation, low-resolution (LR) elevation, and LR TMAX/TMIN as inputs; train UNet using Parameter–Elevation Regressions on Independent Slopes Model (PRISM) data over the south- and central-western United States from 2015 to 2018; and test it independently over both the training domains and the northwestern United States from 2018 to 2019. We found that the original UNet cannot generate enough fine-grained spatial details when transferred to the new northwestern U.S. domain. In response, we modified the original UNet by assigning an extra HR elevation output branch/loss function and training the modified UNet to reproduce both the supervised HR TMAX/TMIN and the unsupervised HR elevation. This improvement is named “UNet-Autoencoder (AE).” UNet-AE supports semisupervised model fine-tuning for unseen domains and showed better gridpoint-level performance with more than 10% mean absolute error (MAE) reduction relative to the original UNet. On the basis of its performance relative to the 4-km PRISM, UNet-AE is a good option to provide generalizable downscaling for regions that are underrepresented by observations.

scholarly journals Improvement and Multi-Population Generalizability of a Deep Learning-Based Chest Radiograph Severity Score for COVID-19

2020 ◽  
Author(s):  
Matthew D Li ◽  
Nishanth T Arun ◽  
Mehak Aggarwal ◽  
Sharut Gupta ◽  
Praveer Singh ◽  
...  
Keyword(s):  
Neural Network ◽  
United States ◽  
Deep Learning ◽  
Disease Severity ◽  
Medical Center ◽  
Academic Medical Center ◽  
Model Performance ◽  
The United States ◽  
Academic Medical ◽  
Test Sets

Purpose: To improve and test the generalizability of a deep learning-based model for assessment of COVID-19 lung disease severity on chest radiographs (CXRs) from different patient populations. Materials and Methods: A published convolutional Siamese neural network-based model previously trained on hospitalized patients with COVID-19 was tuned using 250 outpatient CXRs. This model produces a quantitative measure of COVID-19 lung disease severity (pulmonary x-ray severity (PXS) score). The model was evaluated on CXRs from four test sets, including 3 from the United States (patients hospitalized at an academic medical center (N=154), patients hospitalized at a community hospital (N=113), and outpatients (N=108)) and 1 from Brazil (patients at an academic medical center emergency department (N=303)). Radiologists from both countries independently assigned reference standard CXR severity scores, which were correlated with the PXS scores as a measure of model performance (Pearson r). The Uniform Manifold Approximation and Projection (UMAP) technique was used to visualize the neural network results. Results: Tuning the deep learning model with outpatient data improved model performance in two United States hospitalized patient datasets (r=0.88 and r=0.90, compared to baseline r=0.86). Model performance was similar, though slightly lower, when tested on the United States outpatient and Brazil emergency department datasets (r=0.86 and r=0.85, respectively). UMAP showed that the model learned disease severity information that generalized across test sets. Conclusions: Performance of a deep learning-based model that extracts a COVID-19 severity score on CXRs improved using training data from a different patient cohort (outpatient versus hospitalized) and generalized across multiple populations.

Development of environment design support mixed reality system capable of environment estimation using deep learning

Impact ◽  
2020 ◽  
Vol 2020 (2) ◽  
pp. 9-11
Author(s):  
Tomohiro Fukuda
Keyword(s):  
Deep Learning ◽  
Real Time ◽  
Computer Games ◽  
Construction Projects ◽  
Mixed Reality ◽  
Semantic Segmentation ◽  
Environment Design ◽  
Aviation Training ◽  
Architecture And Design ◽  
World Environment

Mixed reality (MR) is rapidly becoming a vital tool, not just in gaming, but also in education, medicine, construction and environmental management. The term refers to systems in which computer-generated content is superimposed over objects in a real-world environment across one or more sensory modalities. Although most of us have heard of the use of MR in computer games, it also has applications in military and aviation training, as well as tourism, healthcare and more. In addition, it has the potential for use in architecture and design, where buildings can be superimposed in existing locations to render 3D generations of plans. However, one major challenge that remains in MR development is the issue of real-time occlusion. This refers to hiding 3D virtual objects behind real articles. Dr Tomohiro Fukuda, who is based at the Division of Sustainable Energy and Environmental Engineering, Graduate School of Engineering at Osaka University in Japan, is an expert in this field. Researchers, led by Dr Tomohiro Fukuda, are tackling the issue of occlusion in MR. They are currently developing a MR system that realises real-time occlusion by harnessing deep learning to achieve an outdoor landscape design simulation using a semantic segmentation technique. This methodology can be used to automatically estimate the visual environment prior to and after construction projects.

scholarly journals Automatic Deep Learning Semantic Segmentation of Ultrasound Thyroid Cineclips using Recurrent Fully Convolutional Networks

IEEE Access ◽  
2020 ◽  
pp. 1-1
Author(s):  
Jeremy M. Webb ◽  
Duane D. Meixner ◽  
Shaheeda A. Adusei ◽  
Eric C. Polley ◽  
Mostafa Fatemi ◽  
...  
Keyword(s):  
Deep Learning ◽  
Semantic Segmentation ◽  
Convolutional Networks ◽  
Fully Convolutional Networks

scholarly journals Effectiveness of transfer learning for enhancing tumor classification with a convolutional neural network on frozen sections

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Young-Gon Kim ◽  
Sungchul Kim ◽  
Cristina Eunbee Cho ◽  
In Hye Song ◽  
Hee Jin Lee ◽  
...  
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Transfer Learning ◽  
Frozen Section ◽  
Medical Center ◽  
External Validation ◽  
Model Performance ◽  
Classification Model ◽  
Training Dataset

AbstractFast and accurate confirmation of metastasis on the frozen tissue section of intraoperative sentinel lymph node biopsy is an essential tool for critical surgical decisions. However, accurate diagnosis by pathologists is difficult within the time limitations. Training a robust and accurate deep learning model is also difficult owing to the limited number of frozen datasets with high quality labels. To overcome these issues, we validated the effectiveness of transfer learning from CAMELYON16 to improve performance of the convolutional neural network (CNN)-based classification model on our frozen dataset (N = 297) from Asan Medical Center (AMC). Among the 297 whole slide images (WSIs), 157 and 40 WSIs were used to train deep learning models with different dataset ratios at 2, 4, 8, 20, 40, and 100%. The remaining, i.e., 100 WSIs, were used to validate model performance in terms of patch- and slide-level classification. An additional 228 WSIs from Seoul National University Bundang Hospital (SNUBH) were used as an external validation. Three initial weights, i.e., scratch-based (random initialization), ImageNet-based, and CAMELYON16-based models were used to validate their effectiveness in external validation. In the patch-level classification results on the AMC dataset, CAMELYON16-based models trained with a small dataset (up to 40%, i.e., 62 WSIs) showed a significantly higher area under the curve (AUC) of 0.929 than those of the scratch- and ImageNet-based models at 0.897 and 0.919, respectively, while CAMELYON16-based and ImageNet-based models trained with 100% of the training dataset showed comparable AUCs at 0.944 and 0.943, respectively. For the external validation, CAMELYON16-based models showed higher AUCs than those of the scratch- and ImageNet-based models. Model performance for slide feasibility of the transfer learning to enhance model performance was validated in the case of frozen section datasets with limited numbers.

scholarly journals Identifying the Branch of Kiwifruit Based on Unmanned Aerial Vehicle (UAV) Images Using Deep Learning Method

Sensors ◽  
2021 ◽  
Vol 21 (13) ◽  
pp. 4442
Author(s):  
Zijie Niu ◽  
Juntao Deng ◽  
Xu Zhang ◽  
Jun Zhang ◽  
Shijia Pan ◽  
...  
Keyword(s):  
Deep Learning ◽  
Unmanned Aerial Vehicle ◽  
Semantic Segmentation ◽  
Dynamic Monitoring ◽  
Support Vector ◽  
Distribution Maps ◽  
Time Operation ◽  
Aerial Vehicle ◽  
Uav Images ◽  
Segmentation Image

It is important to obtain accurate information about kiwifruit vines to monitoring their physiological states and undertake precise orchard operations. However, because vines are small and cling to trellises, and have branches laying on the ground, numerous challenges exist in the acquisition of accurate data for kiwifruit vines. In this paper, a kiwifruit canopy distribution prediction model is proposed on the basis of low-altitude unmanned aerial vehicle (UAV) images and deep learning techniques. First, the location of the kiwifruit plants and vine distribution are extracted from high-precision images collected by UAV. The canopy gradient distribution maps with different noise reduction and distribution effects are generated by modifying the threshold and sampling size using the resampling normalization method. The results showed that the accuracies of the vine segmentation using PSPnet, support vector machine, and random forest classification were 71.2%, 85.8%, and 75.26%, respectively. However, the segmentation image obtained using depth semantic segmentation had a higher signal-to-noise ratio and was closer to the real situation. The average intersection over union of the deep semantic segmentation was more than or equal to 80% in distribution maps, whereas, in traditional machine learning, the average intersection was between 20% and 60%. This indicates the proposed model can quickly extract the vine distribution and plant position, and is thus able to perform dynamic monitoring of orchards to provide real-time operation guidance.

scholarly journals Quality control stress test for deep learning-based diagnostic model in digital pathology

2021 ◽  
Author(s):  
Birgid Schömig-Markiefka ◽  
Alexey Pryalukhin ◽  
Wolfgang Hulla ◽  
Andrey Bychkov ◽  
Junya Fukuoka ◽  
...  
Keyword(s):  
Deep Learning ◽  
Cancer Detection ◽  
Stress Testing ◽  
Computational Analysis ◽  
Stress Test ◽  
Digital Pathology ◽  
Model Performance ◽  
Diagnostic Model ◽  
Model Accuracy ◽  
Diagnostic Models

AbstractDigital pathology provides a possibility for computational analysis of histological slides and automatization of routine pathological tasks. Histological slides are very heterogeneous concerning staining, sections’ thickness, and artifacts arising during tissue processing, cutting, staining, and digitization. In this study, we digitally reproduce major types of artifacts. Using six datasets from four different institutions digitized by different scanner systems, we systematically explore artifacts’ influence on the accuracy of the pre-trained, validated, deep learning-based model for prostate cancer detection in histological slides. We provide evidence that any histological artifact dependent on severity can lead to a substantial loss in model performance. Strategies for the prevention of diagnostic model accuracy losses in the context of artifacts are warranted. Stress-testing of diagnostic models using synthetically generated artifacts might be an essential step during clinical validation of deep learning-based algorithms.

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