scholarly journals Delineation of Tree Patches in a Mangrove-Marsh Transition Zone by Watershed Segmentation of Aerial Photographs

2020 ◽  
Vol 12 (13) ◽  
pp. 2086
Author(s):  
Himadri Biswas ◽  
Keqi Zhang ◽  
Michael S. Ross ◽  
Daniel Gann
Keyword(s):  
Vegetation Index ◽  
Vegetation Indices ◽  
Aerial Photographs ◽  
Watershed Segmentation ◽  
Marsh Vegetation ◽  
Tree Detection ◽  
Object Based ◽  
Segmented Images ◽  
Individual Trees ◽  
True Color

Mangrove migration, or transgression in response to global climatic changes or sea-level rise, is a slow process; to capture it, understanding both the present distribution of mangroves at individual patch (single- or clumped trees) scale, and their rates of change are essential. In this study, a new method was developed to delineate individual patches and to estimate mangrove cover from very high-resolution (0.08 m spatial resolution) true color (Red (R), Green (G), and Blue (B) spectral channels) aerial photography. The method utilizes marker-based watershed segmentation, where markers are detected using a vegetation index and Otsu’s automatic thresholding. Fourteen commonly used vegetation indices were tested, and shadows were removed from the segmented images to determine their effect on the accuracy of tree detection, cover estimation, and patch delineation. According to point-based accuracy analysis, we obtained adjusted overall accuracies >90% in tree detection using seven vegetation indices. Likewise, using an object-based approach, the highest overlap accuracy between predicted and reference data was 95%. The vegetation index Excess Green (ExG) without shadow removal produced the most accurate mangrove maps by separating tree patches from shadows and background marsh vegetation and detecting more individual trees. The method provides high precision delineation of mangrove trees and patches, and the opportunity to analyze mangrove migration patterns at the scale of isolated individuals and patches.

scholarly journals Identifying Vegetation in Arid Regions Using Object-Based Image Analysis with RGB-Only Aerial Imagery

2019 ◽  
Vol 11 (19) ◽  
pp. 2308 ◽  
Author(s):  
Micha Silver ◽  
Arti Tiwari ◽  
Arnon Karnieli
Keyword(s):  
Image Analysis ◽  
Near Infrared ◽  
Vegetation Indices ◽  
Roc Curves ◽  
Threshold Value ◽  
Aerial Photographs ◽  
Object Based Image Analysis ◽  
Object Based ◽  
True Tree ◽  
Vegetation Patches

Vegetation state is usually assessed by calculating vegetation indices (VIs) derived from remote sensing systems where the near infrared (NIR) band is used to enhance the vegetation signal. However VIs are pixel-based and require both visible and NIR bands. Yet, most archived photographs were obtained with cameras that record only the three visible bands. Attempts to construct VIs with the visible bands alone have shown only limited success, especially in drylands. The current study identifies vegetation patches in the hyperarid Israeli desert using only the visible bands from aerial photographs by adapting an alternative geospatial object-based image analysis (GEOBIA) routine, together with recent improvements in preprocessing. The preprocessing step selects a balanced threshold value for image segmentation using unsupervised parameter optimization. Then the images undergo two processes: segmentation and classification. After tallying modeled vegetation patches that overlap true tree locations, both true positive and false positive rates are obtained from the classification and receiver operating characteristic (ROC) curves are plotted. The results show successful identification of vegetation patches in multiple zones from each study area, with area under the ROC curve values between 0.72 and 0.83.

scholarly journals Pengaruh Tingkat Kompresi Citra ALOS AVNIR-2 terhadap Akurasi Hasil Transformasi Indeks Vegetasi dan Klasifikasi Penutup Lahan Wilayah Salatiga dan Ambarawa, Jawa Tengah

2020 ◽  
Vol 34 (2) ◽  
pp. 130
Author(s):  
Projo Danoedoro
Keyword(s):  
Image Compression ◽  
Vegetation Index ◽  
Vegetation Indices ◽  
Original Data ◽  
Data Availability ◽  
Classification Methods ◽  
Quality Of Data ◽  
Pixel Classification ◽  
Central Java ◽  
Object Based

Abstrak Penggunaan teknik kompresi untuk menghemat ukuran penyimpanan citra digital telah banyak dijumpai dalam aplikasi keseharian. Di sisi lain, kompresi citra juga dapat memberikan konsekuensi berupa kehilangan detil data, yang akan berpengaruh pada integritas data. dan secara teoretis juga akan berpengaruh pada kualitas turunan data.  Penelitian ini mengkaji pengaruh tingkat kompresi citra digital multispektral ALOS-AVNIR2 yang terdiri dari empat saluran dengan resolusi spasial 10 meter terhadap akurasi hasil transformasi indeks vegetasi dan  klasifikasi penutup lahan untuk wilayah Salatiga-Ambarawa, Jawa Tengah.  Citra dikompresi pada sembilan tingkat, yaitu dari tidak kehilangan detil sama sekali (100%, atau sama dengan data asli) hingga 10%, dengan interval 10%. Indeks Vegetasi yang diterapkan meliputi NDVI, TVI dan MSARVI. Klasifikasi multispektral yang diujicobakan meliputi  klasifikasi per-piksel  dan klasifikasi berbasis objek.  Hasil penelitian ini menunjukkan bahwa transformasi indeks vegetasi dan klasifikasi per-piksel mengalami penurunan akurasi secara drastis, sejalan dengan meningkatnya kompresi citra, sementara klasifikasi berbasis objek mengalami perubahan akurasi relatif lebih sedikit dibandingkan analisis per-piksel. Temuan penelitian ini menunjukkan bahwa penggunaan citra terkompresi sebagai masukan proses klasifikasi secara digital sebaiknya dihindari. Meskipun demikian, kalau pun terpaksa dilakukan karena masalah ketersediaan data, maka metode klasifikasi berbasis objeklah yang sebaiknya diterapkan; dan untuk klasifikasi per-piksel maka algoritma jarak minimum terhadap rerata-lah yang  sebaiknya dipilih. Abstract The use of compression techniques for saving storage space of digital imagery has been commonly found in daily applications.  On the other hand, image compression can also provide consequences of losing data details, which will affect data integrity and theoretically will also affect the quality of data derived. This study examined the effect of ALOS-AVNIR2 multispectal image compression level consisting of four channels with 10 m spatial resolution to the accuracies of vegetation index transformation and land cover classification for Salatiga and Ambarawa region, Central Java. This study compressed the image into nine levels, i.e. from lossless details (100%, or equal to original data) up to 10% compression, at 10% intervals. The applied vegetation indices include NDVI, TVI and MSARVI. The multispectral classifications that were piloted include the per-pixel and object-based classification methods. The results of this study indicated that the vegetation index transformation and per-pixel classification have drastically decreased accuracies, in line with the increase in image compression; while the object-based classification has relatively more stable than per-pixel analysis. The findings of this study showed that the use of compressed imagery as an input to digital classification process should be avoided. However, even if it has to be done due to data availability issues, then object-based classification methods should be applied; and especially for per-pixel classification,  the minimum distance to mean algorithm should be chose.

scholarly journals Evaluation of Rapeseed Winter Crop Damage Using UAV-Based Multispectral Imagery

2020 ◽  
Vol 12 (16) ◽  
pp. 2618
Author(s):  
Łukasz Jełowicki ◽  
Konrad Sosnowicz ◽  
Wojciech Ostrowski ◽  
Katarzyna Osińska-Skotak ◽  
Krzysztof Bakuła
Keyword(s):  
Vegetation Index ◽  
Normalized Difference Vegetation Index ◽  
Vegetation Indices ◽  
Frost Damage ◽  
Crop Damage ◽  
Multispectral Imagery ◽  
Spectral Bands ◽  
Red Edge ◽  
Object Based ◽  
Direct Measurements

This research is related to the exploitation of multispectral imagery from an unmanned aerial vehicle (UAV) in the assessment of damage to rapeseed after winter. Such damage is one of a few cases for which reimbursement may be claimed in agricultural insurance. Since direct measurements are difficult in such a case, mainly because of large, unreachable areas, it is therefore important to be able to use remote sensing in the assessment of the plant surface affected by frost damage. In this experiment, UAV images were taken using a Sequoia multispectral camera that collected data in four spectral bands: green, red, red-edge, and near-infrared. Data were acquired from three altitudes above the ground, which resulted in different ground sampling distances. Within several tests, various vegetation indices, calculated based on four spectral bands, were used in the experiment (normalized difference vegetation index (NDVI), normalized difference vegetation index—red edge (NDVI_RE), optimized soil adjusted vegetation index (OSAVI), optimized soil adjusted vegetation index—red edge (OSAVI_RE), soil adjusted vegetation index (SAVI), soil adjusted vegetation index—red edge (SAVI_RE)). As a result, selected vegetation indices were provided to classify the areas which qualified for reimbursement due to frost damage. The negative influence of visible technical roads was proved and eliminated using OBIA (object-based image analysis) to select and remove roads from classified images selected for classification. Detection of damaged areas was performed using three different approaches, one object-based and two pixel-based. Different ground sampling distances and different vegetation indices were tested within the experiment, which demonstrated the possibility of using the modern low-altitude photogrammetry of a UAV platform with a multispectral sensor in applications related to agriculture. Within the tests performed, it was shown that detection using UAV-based multispectral data can be a successful alternative for direct measurements in a field to estimate the area of winterkill damage. The best results were achieved in the study of damage detection using OSAVI and NDVI and images with ground sampling distance (GSD) = 10 cm, with an overall classification accuracy of 95% and a F1-score value of 0.87. Other results of approaches with different flight settings and vegetation indices were also promising.

HEALTHINESS OF OIL PALM PLANTATION TOWARDS SUSTAINABILITY OF ENVIRONMENT

2020 ◽  
Vol 7 (1) ◽  
pp. 21
Author(s):  
Faradina Marzukhi ◽  
Nur Nadhirah Rusyda Rosnan ◽  
Md Azlin Md Said
Keyword(s):  
Oil Palm ◽  
Vegetation Index ◽  
Normalized Difference Vegetation Index ◽  
Satellite Image ◽  
Vegetation Indices ◽  
Soil Nutrient ◽  
Oil Palm Plantation ◽  
Sustainable Environment ◽  
Moisture Analysis ◽  
The Relationship

The aim of this study is to analyse the relationship between vegetation indices of Normalized Difference Vegetation Index (NDVI) and soil nutrient of oil palm plantation at Felcra Nasaruddin Bota in Perak for future sustainable environment. The satellite image was used and processed in the research. By Using NDVI, the vegetation index was obtained which varies from -1 to +1. Then, the soil sample and soil moisture analysis were carried in order to identify the nutrient values of Nitrogen (N), Phosphorus (P) and Potassium (K). A total of seven soil samples were acquired within the oil palm plantation area. A regression model was then made between physical condition of the oil palms and soil nutrients for determining the strength of the relationship. It is hoped that the risk map of oil palm healthiness can be produced for various applications which are related to agricultural plantation.

scholarly journals Modeling of Durum Wheat Yield Based on Sentinel-2 Imagery

Agronomy ◽  
2021 ◽  
Vol 11 (8) ◽  
pp. 1486
Author(s):  
Chris Cavalaris ◽  
Sofia Megoudi ◽  
Maria Maxouri ◽  
Konstantinos Anatolitis ◽  
Marios Sifakis ◽  
...  
Keyword(s):  
Vegetation Index ◽  
Normalized Difference Vegetation Index ◽  
Vegetation Indices ◽  
Model Development ◽  
Wheat Yield ◽  
Growth Period ◽  
Yield Data ◽  
Water Index ◽  
Normalized Difference Water Index ◽  
Sentinel 2

In this study, a modelling approach for the estimation/prediction of wheat yield based on Sentinel-2 data is presented. Model development was accomplished through a two-step process: firstly, the capacity of Sentinel-2 vegetation indices (VIs) to follow plant ecophysiological parameters was established through measurements in a pilot field and secondly, the results of the first step were extended/evaluated in 31 fields, during two growing periods, to increase the applicability range and robustness of the models. Modelling results were examined against yield data collected by a combine harvester equipped with a yield-monitoring system. Normalized Difference Vegetation Index (NDVI) and Enhanced Vegetation Index (EVI) were examined as plant signals and combined with Normalized Difference Water Index (NDWI) and/or Normalized Multiband Drought Index (NMDI) during the growth period or before sowing, as water and soil signals, respectively. The best performing model involved the EVI integral for the 20 April–31 May period as a plant signal and NMDI on 29 April and before sowing as water and soil signals, respectively (R2 = 0.629, RMSE = 538). However, model versions with a single date and maximum seasonal VIs values as a plant signal, performed almost equally well. Since the maximum seasonal VIs values occurred during the last ten days of April, these model versions are suitable for yield prediction.

scholarly journals Using UAV Imagery to Detect and Map Woody Species Encroachment in a Subalpine Grassland: Advantages and Limits

2021 ◽  
Vol 13 (7) ◽  
pp. 1239
Author(s):  
Ludovica Oddi ◽  
Edoardo Cremonese ◽  
Lorenzo Ascari ◽  
Gianluca Filippa ◽  
Marta Galvagno ◽  
...  
Keyword(s):  
Reference Data ◽  
Woody Species ◽  
Accurate Method ◽  
Machine Learning Algorithms ◽  
Italian Alps ◽  
Photo Interpretation ◽  
Tree Detection ◽  
Grassland Ecosystems ◽  
Object Based ◽  
Rgb Images

Woody species encroachment on grassland ecosystems is occurring worldwide with both negative and positive consequences for biodiversity conservation and ecosystem services. Remote sensing and image analysis represent useful tools for the monitoring of this process. In this paper, we aimed at evaluating quantitatively the potential of using high-resolution UAV imagery to monitor the encroachment process during its early development and at comparing the performance of manual and semi-automatic classification methods. The RGB images of an abandoned subalpine grassland on the Western Italian Alps were acquired by drone and then classified through manual photo-interpretation, with both pixel- and object-based semi-automatic models, using machine-learning algorithms. The classification techniques were applied at different resolution levels and tested for their accuracy against reference data including measurements of tree dimensions collected in the field. Results showed that the most accurate method was the photo-interpretation (≈99%), followed by the pixel-based approach (≈86%) that was faster than the manual technique and more accurate than the object-based one (≈78%). The dimensional threshold for juvenile tree detection was lower for the photo-interpretation but comparable to the pixel-based one. Therefore, for the encroachment mapping at its early stages, the pixel-based approach proved to be a promising and pragmatic choice.

scholarly journals Aboveground Biomass Mapping of Crops Supported by Improved CASA Model and Sentinel-2 Multispectral Imagery

2021 ◽  
Vol 13 (14) ◽  
pp. 2755
Author(s):  
Peng Fang ◽  
Nana Yan ◽  
Panpan Wei ◽  
Yifan Zhao ◽  
Xiwang Zhang
Keyword(s):  
Aboveground Biomass ◽  
Production Management ◽  
Vegetation Index ◽  
Net Primary Productivity ◽  
Vegetation Indices ◽  
Biophysical Parameters ◽  
Edge Information ◽  
Casa Model ◽  
Red Edge ◽  
Biomass Mapping

The net primary productivity (NPP) and aboveground biomass mapping of crops based on remote sensing technology are not only conducive to understanding the growth and development of crops but can also be used to monitor timely agricultural information, thereby providing effective decision making for agricultural production management. To solve the saturation problem of the NDVI in the aboveground biomass mapping of crops, the original CASA model was improved using narrow-band red-edge information, which is sensitive to vegetation chlorophyll variation, and the fraction of photosynthetically active radiation (FPAR), NPP, and aboveground biomass of winter wheat and maize were mapped in the main growing seasons. Moreover, in this study, we deeply analyzed the seasonal change trends of crops’ biophysical parameters in terms of the NDVI, FPAR, actual light use efficiency (LUE), and their influence on aboveground biomass. Finally, to analyze the uncertainty of the aboveground biomass mapping of crops, we further discussed the inversion differences of FPAR with different vegetation indices. The results demonstrated that the inversion accuracies of the FPAR of the red-edge normalized vegetation index (NDVIred-edge) and red-edge simple ratio vegetation index (SRred-edge) were higher than those of the original CASA model. Compared with the reference data, the accuracy of aboveground biomass estimated by the improved CASA model was 0.73 and 0.70, respectively, which was 0.21 and 0.13 higher than that of the original CASA model. In addition, the analysis of the FPAR inversions of different vegetation indices showed that the inversion accuracies of the red-edge vegetation indices NDVIred-edge and SRred-edge were higher than those of the other vegetation indices, which confirmed that the vegetation indices involving red-edge information can more effectively retrieve FPAR and aboveground biomass of crops.

scholarly journals Estimating and Monitoring Land Surface Phenology in Rangelands: A Review of Progress and Challenges

2021 ◽  
Vol 13 (11) ◽  
pp. 2060
Author(s):  
Trylee Nyasha Matongera ◽  
Onisimo Mutanga ◽  
Mbulisi Sibanda ◽  
John Odindi
Keyword(s):  
Land Surface ◽  
Vegetation Index ◽  
Critical Role ◽  
Spectral Characteristics ◽  
Vegetation Indices ◽  
Machine Learning Algorithms ◽  
Special Focus ◽  
Land Surface Phenology ◽  
Spectral Vegetation Indices ◽  
Satellite Sensors

Land surface phenology (LSP) has been extensively explored from global archives of satellite observations to track and monitor the seasonality of rangeland ecosystems in response to climate change. Long term monitoring of LSP provides large potential for the evaluation of interactions and feedbacks between climate and vegetation. With a special focus on the rangeland ecosystems, the paper reviews the progress, challenges and emerging opportunities in LSP while identifying possible gaps that could be explored in future. Specifically, the paper traces the evolution of satellite sensors and interrogates their properties as well as the associated indices and algorithms in estimating and monitoring LSP in productive rangelands. Findings from the literature revealed that the spectral characteristics of the early satellite sensors such as Landsat, AVHRR and MODIS played a critical role in the development of spectral vegetation indices that have been widely used in LSP applications. The normalized difference vegetation index (NDVI) pioneered LSP investigations, and most other spectral vegetation indices were primarily developed to address the weaknesses and shortcomings of the NDVI. New indices continue to be developed based on recent sensors such as Sentinel-2 that are characterized by unique spectral signatures and fine spatial resolutions, and their successful usage is catalyzed with the development of cutting-edge algorithms for modeling the LSP profiles. In this regard, the paper has documented several LSP algorithms that are designed to provide data smoothing, gap filling and LSP metrics retrieval methods in a single environment. In the future, the development of machine learning algorithms that can effectively model and characterize the phenological cycles of vegetation would help to unlock the value of LSP information in the rangeland monitoring and management process. Precisely, deep learning presents an opportunity to further develop robust software packages such as the decomposition and analysis of time series (DATimeS) with the abundance of data processing tools and techniques that can be used to better characterize the phenological cycles of vegetation in rangeland ecosystems.

scholarly journals Biomass estimation of cultivated red algae Pyropia using unmanned aerial platform based multispectral imaging

Plant Methods ◽  
2021 ◽  
Vol 17 (1) ◽  
Author(s):  
Shuai Che ◽  
Guoying Du ◽  
Ning Wang ◽  
Kun He ◽  
Zhaolan Mo ◽  
...  
Keyword(s):  
High Throughput ◽  
Vegetation Index ◽  
Multispectral Imaging ◽  
Vegetation Indices ◽  
Spectral Imaging ◽  
Shielding Effect ◽  
Quadratic Model ◽  
Biomass Estimation ◽  
Marine Aquaculture ◽  
Significant Difference

Abstract Background Pyropia is an economically advantageous genus of red macroalgae, which has been cultivated in the coastal areas of East Asia for over 300 years. Realizing estimation of macroalgae biomass in a high-throughput way would great benefit their cultivation management and research on breeding and phenomics. However, the conventional method is labour-intensive, time-consuming, manually destructive, and prone to human error. Nowadays, high-throughput phenotyping using unmanned aerial vehicle (UAV)-based spectral imaging is widely used for terrestrial crops, grassland, and forest, but no such application in marine aquaculture has been reported. Results In this study, multispectral images of cultivated Pyropia yezoensis were taken using a UAV system in the north of Haizhou Bay in the midwestern coast of Yellow Sea. The exposure period of P. yezoensis was utilized to prevent the significant shielding effect of seawater on the reflectance spectrum. The vegetation indices of normalized difference vegetation index (NDVI), ratio vegetation index (RVI), difference vegetation index (DVI) and normalized difference of red edge (NDRE) were derived and indicated no significant difference between the time that P. yezoensis was completely exposed to the air and 1 h later. The regression models of the vegetation indices and P. yezoensis biomass per unit area were established and validated. The quadratic model of DVI (Biomass = − 5.550DVI2 + 105.410DVI + 7.530) showed more accuracy than the other index or indices combination, with the highest coefficient of determination (R2), root mean square error (RMSE), and relative estimated accuracy (Ac) values of 0.925, 8.06, and 74.93%, respectively. The regression model was further validated by consistently predicting the biomass with a high R2 value of 0.918, RMSE of 8.80, and Ac of 82.25%. Conclusions This study suggests that the biomass of Pyropia can be effectively estimated using UAV-based spectral imaging with high accuracy and consistency. It also implied that multispectral aerial imaging is potential to assist digital management and phenomics research on cultivated macroalgae in a high-throughput way.

scholarly journals A Semi-Automated Object-Based Gully Networks Detection Using Different Machine Learning Models: A Case Study of Bowen Catchment, Queensland, Australia

Sensors ◽  
2019 ◽  
Vol 19 (22) ◽  
pp. 4893 ◽  
Author(s):  
Hejar Shahabi ◽  
Ben Jarihani ◽  
Sepideh Tavakkoli Piralilou ◽  
David Chittleborough ◽  
Mohammadtaghi Avand ◽  
...  
Keyword(s):  
Machine Learning ◽  
Image Segmentation ◽  
Vegetation Index ◽  
Scale Parameter ◽  
Slope Aspect ◽  
Support Vector ◽  
Topographic Wetness Index ◽  
Slope Length ◽  
Optimal Scale ◽  
Object Based

Gully erosion is a dominant source of sediment and particulates to the Great Barrier Reef (GBR) World Heritage area. We selected the Bowen catchment, a tributary of the Burdekin Basin, as our area of study; the region is associated with a high density of gully networks. We aimed to use a semi-automated object-based gully networks detection process using a combination of multi-source and multi-scale remote sensing and ground-based data. An advanced approach was employed by integrating geographic object-based image analysis (GEOBIA) with current machine learning (ML) models. These included artificial neural networks (ANN), support vector machines (SVM), and random forests (RF), and an ensemble ML model of stacking to deal with the spatial scaling problem in gully networks detection. Spectral indices such as the normalized difference vegetation index (NDVI) and topographic conditioning factors, such as elevation, slope, aspect, topographic wetness index (TWI), slope length (SL), and curvature, were generated from Sentinel 2A images and the ALOS 12-m digital elevation model (DEM), respectively. For image segmentation, the ESP2 tool was used to obtain three optimal scale factors. On using object pureness index (OPI), object matching index (OMI), and object fitness index (OFI), the accuracy of each scale in image segmentation was evaluated. The scale parameter of 45 with OFI of 0.94, which is a combination of OPI and OMI indices, proved to be the optimal scale parameter for image segmentation. Furthermore, segmented objects based on scale 45 were overlaid with 70% and 30% of a prepared gully inventory map to select the ML models’ training and testing objects, respectively. The quantitative accuracy assessment methods of Precision, Recall, and an F1 measure were used to evaluate the model’s performance. Integration of GEOBIA with the stacking model using a scale of 45 resulted in the highest accuracy in detection of gully networks with an F1 measure value of 0.89. Here, we conclude that the adoption of optimal scale object definition in the GEOBIA and application of the ensemble stacking of ML models resulted in higher accuracy in the detection of gully networks.

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