scholarly journals An Efficient Processing Approach for Colored Point Cloud-Based High-Throughput Seedling Phenotyping

2020 ◽  
Vol 12 (10) ◽  
pp. 1540 ◽  
Author(s):  
Si Yang ◽  
Lihua Zheng ◽  
Wanlin Gao ◽  
Bingbing Wang ◽  
Xia Hao ◽  
...  

Plant height and leaf area are important morphological properties of leafy vegetable seedlings, and they can be particularly useful for plant growth and health research. The traditional measurement scheme is time-consuming and not suitable for continuously monitoring plant growth and health. Individual vegetable seedling quick segmentation is the prerequisite for high-throughput seedling phenotype data extraction at individual seedling level. This paper proposes an efficient learning- and model-free 3D point cloud data processing pipeline to measure the plant height and leaf area of every single seedling in a plug tray. The 3D point clouds are obtained by a low-cost red–green–blue (RGB)-Depth (RGB-D) camera. Firstly, noise reduction is performed on the original point clouds through the processing of useable-area filter, depth cut-off filter, and neighbor count filter. Secondly, the surface feature histograms-based approach is used to automatically remove the complicated natural background. Then, the Voxel Cloud Connectivity Segmentation (VCCS) and Locally Convex Connected Patches (LCCP) algorithms are employed for individual vegetable seedling partition. Finally, the height and projected leaf area of respective seedlings are calculated based on segmented point clouds and validation is carried out. Critically, we also demonstrate the robustness of our method for different growth conditions and species. The experimental results show that the proposed method could be used to quickly calculate the morphological parameters of each seedling and it is practical to use this approach for high-throughput seedling phenotyping.

Sensors ◽  
2020 ◽  
Vol 21 (1) ◽  
pp. 201
Author(s):  
Michael Bekele Maru ◽  
Donghwan Lee ◽  
Kassahun Demissie Tola ◽  
Seunghee Park

Modeling a structure in the virtual world using three-dimensional (3D) information enhances our understanding, while also aiding in the visualization, of how a structure reacts to any disturbance. Generally, 3D point clouds are used for determining structural behavioral changes. Light detection and ranging (LiDAR) is one of the crucial ways by which a 3D point cloud dataset can be generated. Additionally, 3D cameras are commonly used to develop a point cloud containing many points on the external surface of an object around it. The main objective of this study was to compare the performance of optical sensors, namely a depth camera (DC) and terrestrial laser scanner (TLS) in estimating structural deflection. We also utilized bilateral filtering techniques, which are commonly used in image processing, on the point cloud data for enhancing their accuracy and increasing the application prospects of these sensors in structure health monitoring. The results from these sensors were validated by comparing them with the outputs from a linear variable differential transformer sensor, which was mounted on the beam during an indoor experiment. The results showed that the datasets obtained from both the sensors were acceptable for nominal deflections of 3 mm and above because the error range was less than ±10%. However, the result obtained from the TLS were better than those obtained from the DC.


Aerospace ◽  
2018 ◽  
Vol 5 (3) ◽  
pp. 94 ◽  
Author(s):  
Hriday Bavle ◽  
Jose Sanchez-Lopez ◽  
Paloma Puente ◽  
Alejandro Rodriguez-Ramos ◽  
Carlos Sampedro ◽  
...  

This paper presents a fast and robust approach for estimating the flight altitude of multirotor Unmanned Aerial Vehicles (UAVs) using 3D point cloud sensors in cluttered, unstructured, and dynamic indoor environments. The objective is to present a flight altitude estimation algorithm, replacing the conventional sensors such as laser altimeters, barometers, or accelerometers, which have several limitations when used individually. Our proposed algorithm includes two stages: in the first stage, a fast clustering of the measured 3D point cloud data is performed, along with the segmentation of the clustered data into horizontal planes. In the second stage, these segmented horizontal planes are mapped based on the vertical distance with respect to the point cloud sensor frame of reference, in order to provide a robust flight altitude estimation even in presence of several static as well as dynamic ground obstacles. We validate our approach using the IROS 2011 Kinect dataset available in the literature, estimating the altitude of the RGB-D camera using the provided 3D point clouds. We further validate our approach using a point cloud sensor on board a UAV, by means of several autonomous real flights, closing its altitude control loop using the flight altitude estimated by our proposed method, in presence of several different static as well as dynamic ground obstacles. In addition, the implementation of our approach has been integrated in our open-source software framework for aerial robotics called Aerostack.


2021 ◽  
Vol 10 (11) ◽  
pp. 762
Author(s):  
Kaisa Jaalama ◽  
Heikki Kauhanen ◽  
Aino Keitaanniemi ◽  
Toni Rantanen ◽  
Juho-Pekka Virtanen ◽  
...  

The importance of ensuring the adequacy of urban ecosystem services and green infrastructure has been widely highlighted in multidisciplinary research. Meanwhile, the consolidation of cities has been a dominant trend in urban development and has led to the development and implementation of the green factor tool in cities such as Berlin, Melbourne, and Helsinki. In this study, elements of the green factor tool were monitored with laser-scanned and photogrammetrically derived point cloud datasets encompassing a yard in Espoo, Finland. The results show that with the support of 3D point clouds, it is possible to support the monitoring of the local green infrastructure, including elements of smaller size in green areas and yards. However, point clouds generated by distinct means have differing abilities in conveying information on green elements, and canopy covers, for example, might hinder these abilities. Additionally, some green factor elements are more promising for 3D measurement-based monitoring than others, such as those with clear geometrical form. The results encourage the involvement of 3D measuring technologies for monitoring local urban green infrastructure (UGI), also of small scale.


2018 ◽  
Vol 9 (2) ◽  
pp. 37-53
Author(s):  
Sinh Van Nguyen ◽  
Ha Manh Tran ◽  
Minh Khai Tran

Building 3D objects or reconstructing their surfaces from 3D point cloud data are researched activities in the field of geometric modeling and computer graphics. In the recent years, they are also studied and used in some fields such as: graph models and simulation; image processing or restoration of digital heritages. This article presents an improved method for restoring the shape of 3D point cloud surfaces. The method is a combination of creating a Bezier surface patch and computing tangent plane of 3D points to fill holes on a surface of 3D point clouds. This method is described as follows: at first, a boundary for each hole on the surface is identified. The holes are then filled by computing Bezier curves of surface patches to find missing points. After that, the holes are refined based on two steps (rough and elaborate) to adjust the inserted points and preserve the local curvature of the holes. The contribution of the proposed method has been shown in processing time and the novelty of combined computation in this method has preserved the initial shape of the surface


2010 ◽  
Vol 22 (2) ◽  
pp. 158-166 ◽  
Author(s):  
Taro Suzuki ◽  
◽  
Yoshiharu Amano ◽  
Takumi Hashizume

This paper describes outdoor localization for a mobile robot using a laser scanner and three-dimensional (3D) point cloud data. A Mobile Mapping System (MMS) measures outdoor 3D point clouds easily and precisely. The full six-dimensional state of a mobile robot is estimated combining dead reckoning and 3D point cloud data. Two-dimensional (2D) position and orientation are extended to 3D using 3D point clouds assuming that the mobile robot remains in continuous contact with the road surface. Our approach applies a particle filter to correct position error in the laser measurement model in 3D point cloud space. Field experiments were conducted to evaluate the accuracy of our proposal. As the result of the experiment, it was confirmed that a localization precision of 0.2 m (RMS) is possible using our proposal.


2020 ◽  
Vol 12 (18) ◽  
pp. 3043 ◽  
Author(s):  
Juan M. Jurado ◽  
Luís Pádua ◽  
Francisco R. Feito ◽  
Joaquim J. Sousa

The optimisation of vineyards management requires efficient and automated methods able to identify individual plants. In the last few years, Unmanned Aerial Vehicles (UAVs) have become one of the main sources of remote sensing information for Precision Viticulture (PV) applications. In fact, high resolution UAV-based imagery offers a unique capability for modelling plant’s structure making possible the recognition of significant geometrical features in photogrammetric point clouds. Despite the proliferation of innovative technologies in viticulture, the identification of individual grapevines relies on image-based segmentation techniques. In that way, grapevine and non-grapevine features are separated and individual plants are estimated usually considering a fixed distance between them. In this study, an automatic method for grapevine trunk detection, using 3D point cloud data, is presented. The proposed method focuses on the recognition of key geometrical parameters to ensure the existence of every plant in the 3D model. The method was tested in different commercial vineyards and to push it to its limit a vineyard characterised by several missing plants along the vine rows, irregular distances between plants and occluded trunks by dense vegetation in some areas, was also used. The proposed method represents a disruption in relation to the state of the art, and is able to identify individual trunks, posts and missing plants based on the interpretation and analysis of a 3D point cloud. Moreover, a validation process was carried out allowing concluding that the method has a high performance, especially when it is applied to 3D point clouds generated in phases in which the leaves are not yet very dense (January to May). However, if correct flight parametrizations are set, the method remains effective throughout the entire vegetative cycle.


2019 ◽  
Vol 11 (2) ◽  
pp. 198 ◽  
Author(s):  
Chunhua Hu ◽  
Zhou Pan ◽  
Pingping Li

Leaves are used extensively as an indicator in research on tree growth. Leaf area, as one of the most important index in leaf morphology, is also a comprehensive growth index for evaluating the effects of environmental factors. When scanning tree surfaces using a 3D laser scanner, the scanned point cloud data usually contain many outliers and noise. These outliers can be clusters or sparse points, whereas the noise is usually non-isolated but exhibits different attributes from valid points. In this study, a 3D point cloud filtering method for leaves based on manifold distance and normal estimation is proposed. First, leaf was extracted from the tree point cloud and initial clustering was performed as the preprocessing step. Second, outlier clusters filtering and outlier points filtering were successively performed using a manifold distance and truncation method. Third, noise points in each cluster were filtered based on the local surface normal estimation. The 3D reconstruction results of leaves after applying the proposed filtering method prove that this method outperforms other classic filtering methods. Comparisons of leaf areas with real values and area assessments of the mean absolute error (MAE) and mean absolute error percent (MAE%) for leaves in different levels were also conducted. The root mean square error (RMSE) for leaf area was 2.49 cm2. The MAE values for small leaves, medium leaves and large leaves were 0.92 cm2, 1.05 cm2 and 3.39 cm2, respectively, with corresponding MAE% values of 10.63, 4.83 and 3.8. These results demonstrate that the method proposed can be used to filter outliers and noise for 3D point clouds of leaves and improve 3D leaf visualization authenticity and leaf area measurement accuracy.


Author(s):  
M. Weinmann ◽  
A. Schmidt ◽  
C. Mallet ◽  
S. Hinz ◽  
F. Rottensteiner ◽  
...  

The fully automated analysis of 3D point clouds is of great importance in photogrammetry, remote sensing and computer vision. For reliably extracting objects such as buildings, road inventory or vegetation, many approaches rely on the results of a point cloud classification, where each 3D point is assigned a respective semantic class label. Such an assignment, in turn, typically involves statistical methods for feature extraction and machine learning. Whereas the different components in the processing workflow have extensively, but separately been investigated in recent years, the respective connection by sharing the results of crucial tasks across all components has not yet been addressed. This connection not only encapsulates the interrelated issues of neighborhood selection and feature extraction, but also the issue of how to involve spatial context in the classification step. In this paper, we present a novel and generic approach for 3D scene analysis which relies on (<i>i</i>) individually optimized 3D neighborhoods for (<i>ii</i>) the extraction of distinctive geometric features and (<i>iii</i>) the contextual classification of point cloud data. For a labeled benchmark dataset, we demonstrate the beneficial impact of involving contextual information in the classification process and that using individual 3D neighborhoods of optimal size significantly increases the quality of the results for both pointwise and contextual classification.


2019 ◽  
Vol 8 (10) ◽  
pp. 460
Author(s):  
Gracchi ◽  
Gigli ◽  
Noël ◽  
Jaboyedoff ◽  
Madiai ◽  
...  

In this paper, a MATLAB tool for the automatic detection of the best locations to install a wireless sensor network (WSN) is presented. The implemented code works directly on high-resolution 3D point clouds and aims to help in positioning sensors that are part of a network requiring inter-visibility, namely, a clear line of sight (LOS). Indeed, with the development of LiDAR and Structure from Motion technologies, there is an opportunity to directly use 3D point cloud data to perform visibility analyses. By doing so, many disadvantages of traditional modelling and analysis methods can be bypassed. The algorithm points out the optimal deployment of devices following mainly two criteria: inter-visibility (using a modified version of the Hidden Point Removal operator) and inter-distance. Furthermore, an option to prioritize significant areas is provided. The proposed method was first validated on an artificial 3D model, and then on a landslide 3D point cloud acquired from terrestrial laser scanning for the real positioning of an ultrawide-band WSN already installed in 2016. The comparison between collected data and data acquired by the WSN installed following traditional patterns has demonstrated its ability for the optimal deployment of a WSN requiring inter-visibility.


2020 ◽  
Vol 12 (11) ◽  
pp. 1729 ◽  
Author(s):  
Saifullahi Aminu Bello ◽  
Shangshu Yu ◽  
Cheng Wang ◽  
Jibril Muhmmad Adam ◽  
Jonathan Li

A point cloud is a set of points defined in a 3D metric space. Point clouds have become one of the most significant data formats for 3D representation and are gaining increased popularity as a result of the increased availability of acquisition devices, as well as seeing increased application in areas such as robotics, autonomous driving, and augmented and virtual reality. Deep learning is now the most powerful tool for data processing in computer vision and is becoming the most preferred technique for tasks such as classification, segmentation, and detection. While deep learning techniques are mainly applied to data with a structured grid, the point cloud, on the other hand, is unstructured. The unstructuredness of point clouds makes the use of deep learning for its direct processing very challenging. This paper contains a review of the recent state-of-the-art deep learning techniques, mainly focusing on raw point cloud data. The initial work on deep learning directly with raw point cloud data did not model local regions; therefore, subsequent approaches model local regions through sampling and grouping. More recently, several approaches have been proposed that not only model the local regions but also explore the correlation between points in the local regions. From the survey, we conclude that approaches that model local regions and take into account the correlation between points in the local regions perform better. Contrary to existing reviews, this paper provides a general structure for learning with raw point clouds, and various methods were compared based on the general structure. This work also introduces the popular 3D point cloud benchmark datasets and discusses the application of deep learning in popular 3D vision tasks, including classification, segmentation, and detection.


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