scholarly journals The Impact of Canopy Reflectance on the 3D Structure of Individual Trees in a Mediterranean Forest

2020 ◽  
Vol 12 (9) ◽  
pp. 1430 ◽  
Author(s):  
J. Jurado ◽  
M. Ramos ◽  
C. Enríquez ◽  
F. Feito

The characterization of 3D vegetation structures is an important topic, which has been addressed by recent research in remote sensing. The forest inventory requires the proper extraction of accurate structural and functional features of individual trees. This paper presents a novel methodology to study the impact of the canopy reflectance on the 3D tree structure. A heterogeneous natural environment in a Mediterranean forest, in which various tree species (pine, oak and eucalyptus) coexist, was covered using a high-resolution digital camera and a multispectral sensor. These devices were mounted on an Unmanned Aerial Vehicle (UAV) in order to observe the tree architecture and the spectral reflectance at the same time. The Structure from Motion (SfM) method was applied to model the 3D structures using RGB images from the high-resolution camera. The geometric accuracy of the resulting point cloud was validated by georeferencing the study area through multiple ground control points (GCPs). Then, the point cloud was enriched with the reflected light in four narrow-bands (green, near-infrared, red and red-edge). Furthermore, the Normalized Difference Vegetation Index (NDVI) was calculated in order to measure the tree vigor. A comprehensive analysis based on structural and spectral features of individual trees was proposed. A spatial segmentation was developed to detect single-trees in a forest and for each one to identify the crown and trunk. Consequently, structural parameters were extracted, such as the tree height, the diameter at breast height (DBH) and the crown volume. The validation of these measurements was performed by field data, which were taken using a Total Station (TS). In addition, these characteristics were correlated with the mean reflectance in the tree canopy. Regarding the observed tree species, a statistical analysis was carried out to study the impact of reflectance on the 3D tree structure. By applying our method, a more detailed knowledge of forest dynamics can be gained and the impact of available solar irradiance on single-trees can be analyzed.

Author(s):  
Jan-Olle Malm ◽  
Jan-Olov Bovin

Understanding of catalytic processes requires detailed knowledge of the catalyst. As heterogeneous catalysis is a surface phenomena the understanding of the atomic surface structure of both the active material and the support material is of utmost importance. This work is a high resolution electron microscopy (HREM) study of different phases found in a used automobile catalytic converter.The high resolution micrographs were obtained with a JEM-4000EX working with a structural resolution better than 0.17 nm and equipped with a Gatan 622 TV-camera with an image intensifier. Some work (e.g. EDS-analysis and diffraction) was done with a JEM-2000FX equipped with a Link AN10000 EDX spectrometer. The catalytic converter in this study has been used under normal driving conditions for several years and has also been poisoned by using leaded fuel. To prepare the sample, parts of the monolith were crushed, dispersed in methanol and a drop of the dispersion was placed on the holey carbon grid.


Author(s):  
N. D. Browning ◽  
M. M. McGibbon ◽  
M. F. Chisholm ◽  
S. J. Pennycook

The recent development of the Z-contrast imaging technique for the VG HB501 UX dedicated STEM, has added a high-resolution imaging facility to a microscope used mainly for microanalysis. This imaging technique not only provides a high-resolution reference image, but as it can be performed simultaneously with electron energy loss spectroscopy (EELS), can be used to position the electron probe at the atomic scale. The spatial resolution of both the image and the energy loss spectrum can be identical, and in principle limited only by the 2.2 Å probe size of the microscope. There now exists, therefore, the possibility to perform chemical analysis of materials on the scale of single atomic columns or planes.In order to achieve atomic resolution energy loss spectroscopy, the range over which a fast electron can cause a particular excitation event, must be less than the interatomic spacing. This range is described classically by the impact parameter, b, which ranges from ~10 Å for the low loss region of the spectrum to <1Å for the core losses.


2020 ◽  
Vol 3 (1) ◽  
pp. 49
Author(s):  
Edgaras Linkevičius ◽  
Gerda Junevičiūtė

Climate change and warming will potentially have profound effects on forest growth and yield, especially for pure stands in the near future. Thus, increased attention has been paid to mixed stands, e.g., pine and beech mixtures. However, the interaction of tree species growing in mixtures still remains unknown. Thus, the aim of this study was to investigate the impact of the interspecific and intraspecific competition to diameter, height, and crown width of pine and beech trees growing in mixtures, as well as to evaluate the impact of climatic indicators to the beech radial diameter increment. The data was collected in 2017 at the mixed mature pine beech double layer stand, located in the western part of Lithuania. The sample plot of 1.2 hectare was established and tree species, diameter at the breast height, tree height, height-to-crown base, height-to-crown width, and position were measured for all 836 trees. Additionally, a representative sample of radial diameter increments were estimated only for the beech trees by taking out core discs at the height of 1 m when the stand was partially cut. Competition analysis was based on the distance-dependent competition index, which was further based on crown parameters. Climatic effect was evaluated using classification and regression tree (CART) analysis. We found almost no interspecific competition effect to diameter, height, or crown width for both tree species growing in the first layer. However, it had an effect on beeches growing in the second layer. The intraspecific competition effect was important for pine and beech trees, showing a negative effect for both of them. Our results show the possible coexistence of these tree species due to niche differentiation. An analysis of climatic indicators from 1991–2005 revealed that precipitation from February–May of the current vegetation year and mean temperatures from July to September expressed radial diameter increment effects for beech trees. Low temperatures during March and April, as well as high precipitation during January, had a negative effect on beech radial increments. From 2006–2016, the highest effect on radial diameter increments was the mean temperatures from July to September, as well as the precipitation in January of the current year. From 1991–2016, the highest effect on radial diameter increments was the temperature from July to September 1991–2016 and the precipitation in June 1991–2016. Generally, cool temperatures and higher precipitation in June had a positive effect on beech radial increments. Therefore, our results show a sensitivity to high temperatures and droughts during summer amid Lithuanian’s growth conditions.


2021 ◽  
Vol 13 (8) ◽  
pp. 1442
Author(s):  
Kaisen Ma ◽  
Yujiu Xiong ◽  
Fugen Jiang ◽  
Song Chen ◽  
Hua Sun

Detecting and segmenting individual trees in forest ecosystems with high-density and overlapping crowns often results in bias due to the limitations of the commonly used canopy height model (CHM). To address such limitations, this paper proposes a new method to segment individual trees and extract tree structural parameters. The method involves the following key steps: (1) unmanned aerial vehicle (UAV)-scanned, high-density laser point clouds were classified, and a vegetation point cloud density model (VPCDM) was established by analyzing the spatial density distribution of the classified vegetation point cloud in the plane projection; and (2) a local maximum algorithm with an optimal window size was used to detect tree seed points and to extract tree heights, and an improved watershed algorithm was used to extract the tree crowns. The proposed method was tested at three sites with different canopy coverage rates in a pine-dominated forest in northern China. The results showed that (1) the kappa coefficient between the proposed VPCDM and the commonly used CHM was 0.79, indicating that performance of the VPCDM is comparable to that of the CHM; (2) the local maximum algorithm with the optimal window size could be used to segment individual trees and obtain optimal single-tree segmentation accuracy and detection rate results; and (3) compared with the original watershed algorithm, the improved watershed algorithm significantly increased the accuracy of canopy area extraction. In conclusion, the proposed VPCDM may provide an innovative data segmentation model for light detection and ranging (LiDAR)-based high-density point clouds and enhance the accuracy of parameter extraction.


Author(s):  
Krzysztof Jurczuk ◽  
Marcin Czajkowski ◽  
Marek Kretowski

AbstractThis paper concerns the evolutionary induction of decision trees (DT) for large-scale data. Such a global approach is one of the alternatives to the top-down inducers. It searches for the tree structure and tests simultaneously and thus gives improvements in the prediction and size of resulting classifiers in many situations. However, it is the population-based and iterative approach that can be too computationally demanding to apply for big data mining directly. The paper demonstrates that this barrier can be overcome by smart distributed/parallel processing. Moreover, we ask the question whether the global approach can truly compete with the greedy systems for large-scale data. For this purpose, we propose a novel multi-GPU approach. It incorporates the knowledge of global DT induction and evolutionary algorithm parallelization together with efficient utilization of memory and computing GPU’s resources. The searches for the tree structure and tests are performed simultaneously on a CPU, while the fitness calculations are delegated to GPUs. Data-parallel decomposition strategy and CUDA framework are applied. Experimental validation is performed on both artificial and real-life datasets. In both cases, the obtained acceleration is very satisfactory. The solution is able to process even billions of instances in a few hours on a single workstation equipped with 4 GPUs. The impact of data characteristics (size and dimension) on convergence and speedup of the evolutionary search is also shown. When the number of GPUs grows, nearly linear scalability is observed what suggests that data size boundaries for evolutionary DT mining are fading.


Marine Drugs ◽  
2021 ◽  
Vol 19 (4) ◽  
pp. 196
Author(s):  
Muhammad Bilal ◽  
Leonardo Vieira Nunes ◽  
Marco Thúlio Saviatto Duarte ◽  
Luiz Fernando Romanholo Ferreira ◽  
Renato Nery Soriano ◽  
...  

Naturally occurring biological entities with extractable and tunable structural and functional characteristics, along with therapeutic attributes, are of supreme interest for strengthening the twenty-first-century biomedical settings. Irrespective of ongoing technological and clinical advancement, traditional medicinal practices to address and manage inflammatory bowel disease (IBD) are inefficient and the effect of the administered therapeutic cues is limited. The reasonable immune response or invasion should also be circumvented for successful clinical translation of engineered cues as highly efficient and robust bioactive entities. In this context, research is underway worldwide, and researchers have redirected or regained their interests in valorizing the naturally occurring biological entities/resources, for example, algal biome so-called “treasure of untouched or underexploited sources”. Algal biome from the marine environment is an immense source of excellence that has also been demonstrated as a source of bioactive compounds with unique chemical, structural, and functional features. Moreover, the molecular modeling and synthesis of new drugs based on marine-derived therapeutic and biological cues can show greater efficacy and specificity for the therapeutics. Herein, an effort has been made to cover the existing literature gap on the exploitation of naturally occurring biological entities/resources to address and efficiently manage IBD. Following a brief background study, a focus was given to design characteristics, performance evaluation of engineered cues, and point-of-care IBD therapeutics of diverse bioactive compounds from the algal biome. Noteworthy potentialities of marine-derived biologically active compounds have also been spotlighted to underlying the impact role of bio-active elements with the related pathways. The current review is also focused on the applied standpoint and clinical translation of marine-derived bioactive compounds. Furthermore, a detailed overview of clinical applications and future perspectives are also given in this review.


2021 ◽  
Vol 13 (14) ◽  
pp. 2647
Author(s):  
Julia Tatum ◽  
David Wallin

Practical methods for tree species identification are important for both land management and scientific inquiry. LiDAR has been widely used for species mapping due to its ability to characterize 3D structure, but in structurally complex Pacific Northwest forests, additional research is needed. To address this need and to determine the feasibility of species modeling in such forests, we compared six approaches using five algorithms available in R’s lidR package and Trimble’s eCognition software to determine which approach most consistently identified individual trees across a heterogenous riparian landscape. We then classified segments into Douglas fir (Pseudotsuga menziesii), black cottonwood (Populus balsamifera ssp. trichocarpa), and red alder (Alnus rubra). Classification accuracies based on the best-performing segmentation method were 91%, 92%, and 84%, respectively. To our knowledge, this is the first study to investigate tree species modeling from LiDAR in a natural Pacific Northwest forest, and the first to model Pacific Northwest species at the landscape scale. Our results suggest that LiDAR alone may provide enough information on tree species to be useful to land managers in limited applications, even under structurally challenging conditions. With slight changes to the modeling approach, even higher accuracies may be possible.


2014 ◽  
Vol 15 (4) ◽  
pp. 1517-1531 ◽  
Author(s):  
Gerhard Smiatek ◽  
Harald Kunstmann ◽  
Andreas Heckl

Abstract The impact of climate change on the future water availability of the upper Jordan River (UJR) and its tributaries Dan, Snir, and Hermon located in the eastern Mediterranean is evaluated by a highly resolved distributed approach with the fifth-generation Pennsylvania State University–NCAR Mesoscale Model (MM5) run at 18.6- and 6.2-km resolution offline coupled with the Water Flow and Balance Simulation Model (WaSiM). The MM5 was driven with NCEP reanalysis for 1971–2000 and with Hadley Centre Coupled Model, version 3 (HadCM3), GCM forcings for 1971–2099. Because only one regional–global climate model combination was applied, the results may not give the full range of possible future projections. To describe the Dan spring behavior, the hydrological model was extended by a bypass approach to allow the fast discharge components of the Snir to enter the Dan catchment. Simulation results for the period 1976–2000 reveal that the coupled system was able to reproduce the observed discharge rates in the partially karstic complex terrain to a reasonable extent with the high-resolution 6.2-km meteorological input only. The performed future climate simulations show steadily rising temperatures with 2.2 K above the 1976–2000 mean for the period 2031–60 and 3.5 K for the period 2070–99. Precipitation trends are insignificant until the middle of the century, although a decrease of approximately 12% is simulated. For the end of the century, a reduction in rainfall ranging between 10% and 35% can be expected. Discharge in the UJR is simulated to decrease by 12% until 2060 and by 26% until 2099, both related to the 1976–2000 mean. The discharge decrease is associated with a lower number of high river flow years.


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