scholarly journals Ensemble Identification of Spectral Bands Related to Soil Organic Carbon Levels over an Agricultural Field in Southern Ontario, Canada

2019 ◽  
Vol 11 (11) ◽  
pp. 1298 ◽  
Author(s):  
Ahmed Laamrani ◽  
Aaron A. Berg ◽  
Paul Voroney ◽  
Hannes Feilhauer ◽  
Line Blackburn ◽  
...  
Keyword(s):  
Organic Carbon ◽  
Soil Organic Carbon ◽  
Near Infrared ◽  
Hyperspectral Data ◽  
Support Vector ◽  
Least Squares Regression ◽  
Agricultural Field ◽  
Southern Ontario ◽  
Spectral Bands ◽  
Selection Of

The recent use of hyperspectral remote sensing imagery has introduced new opportunities for soil organic carbon (SOC) assessment and monitoring. These data enable monitoring of a wide variety of soil properties but pose important methodological challenges. Highly correlated hyperspectral spectral bands can affect the prediction and accuracy as well as the interpretability of the retrieval model. Therefore, the spectral dimension needs to be reduced through a selection of specific spectral bands or regions that are most helpful to describing SOC. This study evaluates the efficiency of visible near-infrared (VNIR) and shortwave near-infrared (SWIR) hyperspectral data to identify the most informative hyperspectral bands responding to SOC content in agricultural soils. Soil samples (111) were collected over an agricultural field in southern Ontario, Canada and analyzed against two hyperspectral datasets: An airborne Nano-Hyperspec imaging sensor with 270 bands (400–1000 nm) and a laboratory hyperspectral dataset (ASD FieldSpec 3) along the 1000–2500 nm range (NIR-SWIR). In parallel, a multimethod modeling approach consisting of random forest, support vector machine, and partial least squares regression models was used to conduct band selections and to assess the validity of the selected bands. The multimethod model resulted in a selection of optimal band or regions over the VNIR and SWIR sensitive to SOC and potentially for mapping. The bands that achieved the highest respective importance values were 711–715, 727, 986–998, and 433–435 nm regions (VNIR); and 2365–2373, 2481–2500, and 2198–2206 nm (NIR-SWIR). Some of these bands are in agreement with the absorption features of SOC reported in the literature, whereas others have not been reported before. Ultimately, the selection of optimal band and regions is of importance for quantification of agricultural SOC and would provide a new framework for creating optimized SOC-specific sensors.

scholarly journals Comparison of Field and Laboratory Wet Soil Spectra in the Vis-NIR Range for Soil Organic Carbon Prediction in the Absence of Laboratory Dry Measurements

2020 ◽  
Vol 12 (18) ◽  
pp. 3082
Author(s):  
James Kobina Mensah Biney ◽  
Luboš Borůvka ◽  
Prince Chapman Agyeman ◽  
Karel Němeček ◽  
Aleš Klement
Keyword(s):  
Organic Carbon ◽  
Soil Organic Carbon ◽  
Soil Properties ◽  
Near Infrared ◽  
Rapid Determination ◽  
Principal Component Regression ◽  
Principal Component ◽  
Support Vector ◽  
Least Squares Regression ◽  
Orthogonal Signal Correction

Spectroscopy has demonstrated the ability to predict specific soil properties. Consequently, it is a promising avenue to complement the traditional methods that are costly and time-consuming. In the visible-near infrared (Vis-NIR) region, spectroscopy has been widely used for the rapid determination of organic components, especially soil organic carbon (SOC) using laboratory dry (lab-dry) measurement. However, steps such as collecting, grinding, sieving and soil drying at ambient (room) temperature and humidity for several days, which is a vital process, make the lab-dry preparation a bit slow compared to the field or laboratory wet (lab-wet) measurement. The use of soil spectra measured directly in the field or on a wet sample remains challenging due to uncontrolled soil moisture variations and other environmental conditions. However, for direct and timely prediction and mapping of soil properties, especially SOC, the field or lab-wet measurement could be an option in place of the lab-dry measurement. This study focuses on comparison of field and naturally acquired laboratory measurement of wet samples in Visible (VIS), Near-Infrared (NIR) and Vis-NIR range using several pretreatment approaches including orthogonal signal correction (OSC). The comparison was concluded with the development of validation models for SOC prediction based on partial least squares regression (PLSR) and support vector machine (SVMR). Nonetheless, for the OSC implementation, we use principal component regression (PCR) together with PLSR as SVMR is not appropriate under OSC. For SOC prediction, the field measurement was better in the VIS range with R2CV = 0.47 and RMSEPcv = 0.24, while in Vis-NIR range the lab-wet measurement was better with R2CV = 0.44 and RMSEPcv = 0.25, both using the SVMR algorithm. However, the prediction accuracy improves with the introduction of OSC on both samples. The highest prediction was obtained with the lab-wet dataset (using PLSR) in the NIR and Vis-NIR range with R2CV = 0.54/0.55 and RMSEPcv = 0.24. This result indicates that the field and, in particular, lab-wet measurements, which are not commonly used, can also be useful for SOC prediction, just as the lab-dry method, with some adjustments.

scholarly journals Estimating Soil Arsenic Content with Visible and Near-Infrared Hyperspectral Reflectance

2020 ◽  
Vol 12 (4) ◽  
pp. 1476 ◽  
Author(s):  
Lei Han ◽  
Rui Chen ◽  
Huili Zhu ◽  
Yonghua Zhao ◽  
Zhao Liu ◽  
...  
Keyword(s):  
Near Infrared ◽  
Back Propagation ◽  
Hyperspectral Data ◽  
Pollution Monitoring ◽  
World Health ◽  
Support Vector ◽  
Inversion Method ◽  
Arsenic Content ◽  
Least Squares Regression ◽  
Soil Arsenic

Soil arsenic (AS) contamination has attracted a great deal of attention because of its detrimental effects on environments and humans. AS and inorganic AS compounds have been classified as a class of carcinogens by the World Health Organization. In order to select a high-precision method for predicting the soil AS content using hyperspectral techniques, we collected 90 soil samples from six different land use types to obtain the soil AS content by chemical analysis and hyperspectral data based on an indoor hyperspectral experiment. A partial least squares regression (PLSR), a support vector regression (SVR), and a back propagation neural network (BPNN) were used to establish a relationship between the hyperspectral and the soil AS content to predict the soil AS content. In addition, the feasibility and modeling accuracy of different interval spectral resampling, different spectral pretreatment methods, feature bands, and full-band were compared and discussed to explore the best inversion method for estimating soil AS content by hyperspectral. The results show that 10 nm + second derivative (SD) + BPNN is the optimum method to predict soil AS content estimation; R v 2 is 0.846 and residual predictive deviation (RPD) is 2.536. These results can expand the representativeness and practicability of the model to a certain extent and provide a scientific basis and technical reference for soil pollution monitoring.

scholarly journals Detection of New Zealand Kauri Trees with AISA Aerial Hyperspectral Data for Use in Multispectral Monitoring

2019 ◽  
Vol 11 (23) ◽  
pp. 2865 ◽  
Author(s):  
Jane J. Meiforth ◽  
Henning Buddenbaum ◽  
Joachim Hill ◽  
James Shepherd ◽  
David A. Norton
Keyword(s):  
New Zealand ◽  
Near Infrared ◽  
Hyperspectral Data ◽  
Support Vector ◽  
Optical Remote Sensing ◽  
Pixel Resolution ◽  
Water Index ◽  
Main Challenge ◽  
Representative Selection ◽  
Selection Of

The endemic New Zealand kauri trees (Agathis australis) are of major importance for the forests in the northern part of New Zealand. The mapping of kauri locations is required for the monitoring of the deadly kauri dieback disease (Phytophthora agathidicida (PTA)). In this study, we developed a method to identify kauri trees by optical remote sensing that can be applied in an area-wide campaign. Dead and dying trees were separated in one class and the remaining trees with no to medium stress symptoms were defined in the two classes “kauri” and “other”. The reference dataset covers a representative selection of 3165 precisely located crowns of kauri and 21 other canopy species in the Waitakere Ranges west of Auckland. The analysis is based on an airborne hyperspectral AISA Fenix image (437–2337 nm, 1 m2 pixel resolution). The kauri spectra show characteristically steep reflectance and absorption features in the near-infrared (NIR) region with a distinct long descent at 1215 nm, which can be parameterised with a modified Normalised Water Index (mNDWI-Hyp). With a Jeffries–Matusita separability over 1.9, the kauri spectra can be well separated from 21 other canopy vegetation spectra. The Random Forest classifier performed slightly better than Support Vector Machine. A combination of the mNDWI-Hyp index with four additional spectral indices with three red to NIR bands resulted in an overall pixel-based accuracy (OA) of 91.7% for crowns larger 3 m diameter. While the user’s and producer’s accuracies for the class “kauri” with 94.6% and 94.8% are suitable for management purposes, the separation of “dead/dying trees” from “other” canopy vegetation poses the main challenge. The OA can be improved to 93.8% by combining “kauri” and “dead/dying” trees in one class, separate classifications for low and high forest stands and a binning to 10 nm bandwidths. Additional wavelengths and their respective indices only improved the OA up to 0.6%. The method developed in this study allows an accurate location of kauri trees for an area-wide mapping with a five-band multispectral sensor in a representative selection of forest ecosystems.

scholarly journals Laboratory Spectroscopy Assessments of Rainfed Paddy Soil Samples on Visible and Near-Infrared Spectroscopy Reflectance for Estimating Soil Organic Carbon

2016 ◽  
Vol 9 ◽  
pp. ASWR.S40173 ◽  
Author(s):  
Sakda Homhuan ◽  
Wanwisa Pansak ◽  
Siam Lawawirojwong ◽  
Chada Narongrit
Keyword(s):  
Infrared Spectroscopy ◽  
Organic Carbon ◽  
Soil Organic Carbon ◽  
Near Infrared Spectroscopy ◽  
Paddy Soil ◽  
Partial Least Squares Regression ◽  
Near Infrared ◽  
Soil Samples ◽  
Least Squares Regression ◽  
Soc Estimation

Visible and near-infrared spectroscopy is a rapid, less expensive, and nondestructive alternative to conventional methods of soil analysis. This study aimed to investigate appropriate soil sample preparations and particle sizes for estimating soil organic carbon (SOC) through the use of laboratory spectroscopy. Rainfed paddy soils were sampled from 240 sampling sites to record their spectral reflectance and to measure their SOC contents in the laboratory. Partial least squares regression was applied to select the best model to estimate SOC using soil spectra. The results showed that the highest accuracy of SOC estimation was gained from soil samples prepared by 2 mm sieving. A short-wave infrared region was the most appropriate spectral wavelength for SOC estimation of rainfed paddy soil. Although the model showed potential in SOC prediction, the accuracy of partial least squares regression prediction in each spectral region varied between sampling times. Therefore, these models and methods should be further tested in soils sampled from different seasons and other regions to prove consistent validity. However, these results are useful for wavelength selection and soil sample preparation in future laboratory spectroscopy.

scholarly journals No Silver Bullet for Digital Soil Mapping: Country-specific Soil Organic Carbon Estimates across Latin America

2018 ◽  
Author(s):  
Mario Guevara ◽  
Guillermo Federico Olmedo ◽  
Emma Stell ◽  
Yusuf Yigini ◽  
Yameli Aguilar Duarte ◽  
...  
Keyword(s):  
Latin America ◽  
Organic Carbon ◽  
Soil Organic Carbon ◽  
Soil Mapping ◽  
Digital Soil Mapping ◽  
Training Data ◽  
Support Vector ◽  
Least Squares Regression ◽  
Pixel Resolution ◽  
Country Specific

Abstract. Country-specific soil organic carbon (SOC) maps are the baseline for the Global SOC Map of the Global Soil Partnership (GSOCmap-GSP). This endeavor requires harmonizing heterogeneous datasets and building country-specific capacities for digital soil mapping (DSM). We identified country-specific predictors for SOC and tested the performance of five predictive algorithms for mapping SOC across Latin America. The algorithms included: support vector machines, random forest, kernel weighted nearest neighbors, partial least squares regression, and regression-Kriging based on stepwise multiple linear models. Country-specific training data and SOC predictors (5 × 5 km pixel resolution) were obtained from ISRIC-World-Soil-Information-System. In general, temperature, soil type, vegetation indices and topographic constraints were the best predictors for SOC, but country-specific predictors and their respective weights varied across Latin America. We compared a large diversity of country-specific data scenarios and were able to explain ~ 53 % of SOC variability (range

scholarly journals Effects of Urban Forest Types and Traits on Soil Organic Carbon Stock in Beijing

Forests ◽  
2021 ◽  
Vol 12 (4) ◽  
pp. 394
Author(s):  
Xinhui Xu ◽  
Zhenkai Sun ◽  
Zezhou Hao ◽  
Qi Bian ◽  
Kaiyue Wei ◽  
...  
Keyword(s):  
Organic Carbon ◽  
Soil Organic Carbon ◽  
Carbon Stock ◽  
Urban Forest ◽  
Coniferous Forest ◽  
Predictor Variable ◽  
Urban Forests ◽  
Least Squares Regression ◽  
Forest Types ◽  
Organic Carbon Stock

Forests can affect soil organic carbon (SOC) quality and distribution through forest types and traits. However, much less is known about the influence of urban forests on SOC, especially in the effects of different forest types, such as coniferous and broadleaved forests. Our objectives were to assess the effects of urban forest types on the variability of SOC content (SOC concentration (SOCC) and SOC density (SOCD)) and determine the key forest traits influencing SOC. Data from 168 urban forest plots of coniferous or broadleaved forests located in the Beijing urban area were used to predict the effects of forest types and traits on SOC in three different soil layers, 0–10 cm, 10–20 cm, and 20–30 cm. The analysis of variance and multiple comparisons were used to test the differences in SOC between forest types or layers. Partial least squares regression (PLSR) was used to explain the influence of forest traits on SOC and select the significant predictors. Our results showed that in urban forests, the SOCC and SOCD values of the coniferous forest group were both significantly higher than those of the broadleaved group. The SOCC of the surface soil was significantly higher than those of the following two deep layers. In PLSR models, 42.07% of the SOCC variance and 35.83% of the SOCD variance were explained by forest traits. Diameter at breast height was selected as the best predictor variable by comparing variable importance in projection (VIP) scores in the models. The results suggest that forest types and traits could be used as an optional approach to assess the organic carbon stock in urban forest soils. This study found substantial effects of urban forest types and traits on soil organic carbon sequestration, which provides important data support for urban forest planning and management.

scholarly journals Early Detection of Plant Viral Disease Using Hyperspectral Imaging and Deep Learning

Sensors ◽  
2021 ◽  
Vol 21 (3) ◽  
pp. 742
Author(s):  
Canh Nguyen ◽  
Vasit Sagan ◽  
Matthew Maimaitiyiming ◽  
Maitiniyazi Maimaitijiang ◽  
Sourav Bhadra ◽  
...  
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Early Detection ◽  
Convolutional Neural Network ◽  
Near Infrared ◽  
Hyperspectral Data ◽  
Viral Diseases ◽  
Support Vector ◽  
Spectral Features ◽  
Feature Spaces

Early detection of grapevine viral diseases is critical for early interventions in order to prevent the disease from spreading to the entire vineyard. Hyperspectral remote sensing can potentially detect and quantify viral diseases in a nondestructive manner. This study utilized hyperspectral imagery at the plant level to identify and classify grapevines inoculated with the newly discovered DNA virus grapevine vein-clearing virus (GVCV) at the early asymptomatic stages. An experiment was set up at a test site at South Farm Research Center, Columbia, MO, USA (38.92 N, −92.28 W), with two grapevine groups, namely healthy and GVCV-infected, while other conditions were controlled. Images of each vine were captured by a SPECIM IQ 400–1000 nm hyperspectral sensor (Oulu, Finland). Hyperspectral images were calibrated and preprocessed to retain only grapevine pixels. A statistical approach was employed to discriminate two reflectance spectra patterns between healthy and GVCV vines. Disease-centric vegetation indices (VIs) were established and explored in terms of their importance to the classification power. Pixel-wise (spectral features) classification was performed in parallel with image-wise (joint spatial–spectral features) classification within a framework involving deep learning architectures and traditional machine learning. The results showed that: (1) the discriminative wavelength regions included the 900–940 nm range in the near-infrared (NIR) region in vines 30 days after sowing (DAS) and the entire visual (VIS) region of 400–700 nm in vines 90 DAS; (2) the normalized pheophytization index (NPQI), fluorescence ratio index 1 (FRI1), plant senescence reflectance index (PSRI), anthocyanin index (AntGitelson), and water stress and canopy temperature (WSCT) measures were the most discriminative indices; (3) the support vector machine (SVM) was effective in VI-wise classification with smaller feature spaces, while the RF classifier performed better in pixel-wise and image-wise classification with larger feature spaces; and (4) the automated 3D convolutional neural network (3D-CNN) feature extractor provided promising results over the 2D convolutional neural network (2D-CNN) in learning features from hyperspectral data cubes with a limited number of samples.

Building a near infrared spectral library for soil organic carbon estimation in the Limpopo National Park, Mozambique

Geoderma ◽  
2012 ◽  
Vol 183-184 ◽  
pp. 41-48 ◽  
Author(s):  
A.H. Cambule ◽  
D.G. Rossiter ◽  
J.J. Stoorvogel ◽  
E.M.A. Smaling
Keyword(s):  
Organic Carbon ◽  
Soil Organic Carbon ◽  
National Park ◽  
Near Infrared ◽  
Spectral Library ◽  
Infrared Spectral
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