scholarly journals Upscaling Solar-Induced Chlorophyll Fluorescence from an Instantaneous to Daily Scale Gives an Improved Estimation of the Gross Primary Productivity

2018 ◽  
Vol 10 (10) ◽  
pp. 1663 ◽  
Author(s):  
Jiaochan Hu ◽  
Liangyun Liu ◽  
Jian Guo ◽  
Shanshan Du ◽  
Xinjie Liu
Keyword(s):  
Chlorophyll Fluorescence ◽  
Spatial Scales ◽  
Gross Primary Production ◽  
Weather Conditions ◽  
Coefficient Of Determination ◽  
Atmospheric Scattering ◽  
Daily Scale ◽  
Weather Changes ◽  
Length Of The Day

Solar-induced chlorophyll fluorescence (SIF) is closely linked to the photosynthesis of plants and has the potential to estimate gross primary production (GPP) at different temporal and spatial scales. However, remotely sensed SIF at a ground or space level is usually instantaneous, which cannot represent the daily total SIF. The temporal mismatch between instantaneous SIF (SIFinst) and daily GPP (GPPdaily) impacts their correlation across space and time. Previous studies have upscaled SIFinst to the daily scale based on the diurnal cycle in the cosine of the solar zenith angle ( cos ( SZA ) ) to correct the effects of latitude and length of the day on the variations in the SIF-GPP correlation. However, the important effects of diurnal weather changes due to cloud and atmospheric scattering were not considered. In this study, we present a SIF upscaling method using photosynthetically active radiation (PAR) as a driving variable. First, a conversion factor (i.e., the ratio of the instantaneous PAR (PARinst) to daily PAR (PARdaily)) was used to upscale in-situ SIF measurements from the instantaneous to daily scale. Then, the performance of the SIF upscaling method was evaluated under changing weather conditions and different latitudes using continuous tower-based measurements at two sites. The results prove that our PAR-based method can reduce not only latitude-dependent but also the weather-dependent variations in the SIF-GPP model. Specifically, the PAR-based method gave a more accurate prediction of diurnal and daily SIF (SIFdaily) than the cos ( SZA ) -based method, with decreased relative root mean square error (RRMSE) values from 42.2% to 25.6% at half-hour intervals and from 25.4% to 13.3% at daily intervals. Moreover, the PAR-based upscaled SIFdaily had a stronger correlation with the daily absorbed PAR (APAR) than both the SIFinst and cos ( SZA ) -based upscaled SIFdaily, especially for cloudy days with a coefficient of determination (R2) that increased from approximately 0.5 to 0.8. Finally, the PAR-based SIFdaily was linked to GPPdaily and compared to the SIFinst or cos ( SZA ) -based SIFdaily. The results indicate that the SIF-GPP correlation can obviously be improved, with an increased R2 from approximately 0.65 to 0.75. Our study confirms the importance of upscaling SIF from the instantaneous to daily scale when linking SIF with GPP and emphasizes the need to take diurnal weather changes into account for SIF temporal upscaling.

scholarly journals Estimating Global Gross Primary Production from Sun-Induced Chlorophyll Fluorescence Data and Auxiliary Information Using Machine Learning Methods

2021 ◽  
Vol 13 (5) ◽  
pp. 963
Author(s):  
Yu Bai ◽  
Shunlin Liang ◽  
Wenping Yuan
Keyword(s):  
Machine Learning ◽  
Chlorophyll Fluorescence ◽  
Primary Production ◽  
Gross Primary Production ◽  
Global Scale ◽  
In Situ Measurements ◽  
Estimation Methods ◽  
Coefficient Of Determination ◽  
Flux Tower

The gross primary production (GPP) is important for regulating the global carbon cycle and climate change. Recent studies have shown that sun-induced chlorophyll fluorescence (SIF) is highly advantageous regarding GPP monitoring. However, using SIF to estimate GPP on a global scale is limited by the lack of a stable SIF-GPP relationship. Here, we estimated global monthly GPP at 0.05° spatial resolution for the period 2001–2017, using the global OCO-2-based SIF product (GOSIF) and other auxiliary data. Large amounts of flux tower data are not available to the public and the available data is not evenly distributed globally and has a smaller measured footprint than the GOSIF data. This makes it difficult to use the flux tower GPP directly as an input to the model. Our strategy is to scale in situ measurements using two moderate-resolution satellite GPP products (MODIS and GLASS). Specifically, these two satellite GPP products were calibrated and eventually integrated by in situ measurements (FLUXNET2015 dataset, 83 sites), which was then used to train a machine learning model (GBRT) that performed the best among five evaluated models. The GPP estimates from GOSIF were highly accurate coefficient of determination (R2) = 0.58, root mean square error (RMSE) = 2.74 g C·m−2, bias = –0.34 g C·m−2) as validated by in situ measurements, and exhibited reasonable spatial and seasonal variations on a global scale. Our method requires fewer input variables and has higher computational efficiency than other satellite GPP estimation methods. Satellite-based SIF data provide a unique opportunity for more accurate, near real-time GPP mapping in the future.

scholarly journals Diurnal and Seasonal Solar Induced Chlorophyll Fluorescence and Photosynthesis in a Boreal Scots Pine Canopy

2019 ◽  
Vol 11 (3) ◽  
pp. 273 ◽  
Author(s):  
Caroline Nichol ◽  
Guillaume Drolet ◽  
Albert Porcar-Castell ◽  
Tom Wade ◽  
Neus Sabater ◽  
...  
Keyword(s):  
Chlorophyll Fluorescence ◽  
Eddy Covariance ◽  
Scots Pine ◽  
Optical System ◽  
Spatial Scales ◽  
Gross Primary Production ◽  
Photochemical Efficiency ◽  
Effective Quantum Yield ◽  
Time Step ◽  
Eddy Covariance System

Solar induced chlorophyll fluorescence has been shown to be increasingly an useful proxy for the estimation of gross primary productivity (GPP), at a range of spatial scales. Here, we explore the seasonality in a continuous time series of canopy solar induced fluorescence (hereafter SiF) and its relation to canopy gross primary production (GPP), canopy light use efficiency (LUE), and direct estimates of leaf level photochemical efficiency in an evergreen canopy. SiF was calculated using infilling in two bands from the incoming and reflected radiance using a pair of Ocean Optics USB2000+ spectrometers operated in a dual field of view mode, sampling at a 30 min time step using custom written automated software, from early spring through until autumn in 2011. The optical system was mounted on a tower of 18 m height adjacent to an eddy covariance system, to observe a boreal forest ecosystem dominated by Scots pine. (Pinus sylvestris) A Walz MONITORING-PAM, multi fluorimeter system, was simultaneously mounted within the canopy adjacent to the footprint sampled by the optical system. Following correction of the SiF data for O2 and structural effects, SiF, SiF yield, LUE, the photochemicsl reflectance index (PRI), and the normalized difference vegetation index (NDVI) exhibited a seasonal pattern that followed GPP sampled by the eddy covariance system. Due to the complexities of solar azimuth and zenith angle (SZA) over the season on the SiF signal, correlations between SiF, SiF yield, GPP, and LUE were assessed on SZA <50° and under strictly clear sky conditions. Correlations found, even under these screened scenarios, resulted around ~r2 = 0.3. The diurnal responses of SiF, SiF yield, PAM estimates of effective quantum yield (ΔF/Fm′), and meteorological parameters demonstrated some agreement over the diurnal cycle. The challenges inherent in SiF retrievals in boreal evergreen ecosystems are discussed.

scholarly journals Mapping High Spatiotemporal-Resolution Soil Moisture by Upscaling Sparse Ground-Based Observations Using a Bayesian Linear Regression Method for Comparison with Microwave Remotely Sensed Soil Moisture Products

2021 ◽  
Vol 13 (2) ◽  
pp. 228
Author(s):  
Jian Kang ◽  
Rui Jin ◽  
Xin Li ◽  
Yang Zhang
Keyword(s):  
Soil Moisture ◽  
Large Scale ◽  
Spatial Scales ◽  
Microwave Remote Sensing ◽  
In Situ Measurements ◽  
Spatial Density ◽  
Linear Regression Method ◽  
Spatiotemporal Resolution ◽  
Pixel Scale

In recent decades, microwave remote sensing (RS) has been used to measure soil moisture (SM). Long-term and large-scale RS SM datasets derived from various microwave sensors have been used in environmental fields. Understanding the accuracies of RS SM products is essential for their proper applications. However, due to the mismatched spatial scale between the ground-based and RS observations, the truth at the pixel scale may not be accurately represented by ground-based observations, especially when the spatial density of in situ measurements is low. Because ground-based observations are often sparsely distributed, temporal upscaling was adopted to transform a few in situ measurements into SM values at a pixel scale of 1 km by introducing the temperature vegetation dryness index (TVDI) related to SM. The upscaled SM showed high consistency with in situ SM observations and could accurately capture rainfall events. The upscaled SM was considered as the reference data to evaluate RS SM products at different spatial scales. In regard to the validation results, in addition to the correlation coefficient (R) of the Soil Moisture Active Passive (SMAP) SM being slightly lower than that of the Climate Change Initiative (CCI) SM, SMAP had the best performance in terms of the root-mean-square error (RMSE), unbiased RMSE and bias, followed by the CCI. The Soil Moisture and Ocean Salinity (SMOS) products were in worse agreement with the upscaled SM and were inferior to the R value of the X-band SM of the Advanced Microwave Scanning Radiometer 2 (AMSR2). In conclusion, in the study area, the SMAP and CCI SM are more reliable, although both products were underestimated by 0.060 cm3 cm−3 and 0.077 cm3 cm−3, respectively. If the biases are corrected, then the improved SMAP with an RMSE of 0.043 cm3 cm−3 and the CCI with an RMSE of 0.039 cm3 cm−3 will hopefully reach the application requirement for an accuracy with an RMSE less than 0.040 cm3 cm−3.

scholarly journals Prediction of Healing Performance of Autogenous Healing Concrete Using Machine Learning

Materials ◽  
2021 ◽  
Vol 14 (15) ◽  
pp. 4068
Author(s):  
Xu Huang ◽  
Mirna Wasouf ◽  
Jessada Sresakoolchai ◽  
Sakdirat Kaewunruen
Keyword(s):  
Machine Learning ◽  
Search Algorithm ◽  
Weather Conditions ◽  
Prediction Performance ◽  
Machine Learning Algorithms ◽  
Coefficient Of Determination ◽  
Gradient Boosting ◽  
Support Vector ◽  
Self Healing ◽  
Artificial Neural Network Ann

Cracks typically develop in concrete due to shrinkage, loading actions, and weather conditions; and may occur anytime in its life span. Autogenous healing concrete is a type of self-healing concrete that can automatically heal cracks based on physical or chemical reactions in concrete matrix. It is imperative to investigate the healing performance that autogenous healing concrete possesses, to assess the extent of the cracking and to predict the extent of healing. In the research of self-healing concrete, testing the healing performance of concrete in a laboratory is costly, and a mass of instances may be needed to explore reliable concrete design. This study is thus the world’s first to establish six types of machine learning algorithms, which are capable of predicting the healing performance (HP) of self-healing concrete. These algorithms involve an artificial neural network (ANN), a k-nearest neighbours (kNN), a gradient boosting regression (GBR), a decision tree regression (DTR), a support vector regression (SVR) and a random forest (RF). Parameters of these algorithms are tuned utilising grid search algorithm (GSA) and genetic algorithm (GA). The prediction performance indicated by coefficient of determination (R2) and root mean square error (RMSE) measures of these algorithms are evaluated on the basis of 1417 data sets from the open literature. The results show that GSA-GBR performs higher prediction performance (R2GSA-GBR = 0.958) and stronger robustness (RMSEGSA-GBR = 0.202) than the other five types of algorithms employed to predict the healing performance of autogenous healing concrete. Therefore, reliable prediction accuracy of the healing performance and efficient assistance on the design of autogenous healing concrete can be achieved.

scholarly journals Comparison of the Concentration of Risk Elements in Alluvial Soils Determined by pXRF In Situ, in the Laboratory, and by ICP-OES

Agronomy ◽  
2021 ◽  
Vol 11 (5) ◽  
pp. 938
Author(s):  
Ladislav Menšík ◽  
Lukáš Hlisnikovský ◽  
Pavel Nerušil ◽  
Eva Kunzová
Keyword(s):  
Precision Agriculture ◽  
Alluvial Soil ◽  
Coefficient Of Determination ◽  
Fast Method ◽  
Agricultural Practice ◽  
Regression Equations ◽  
Icp Oes ◽  
Risk Elements ◽  
The Relationship

The aim of the study was to compare the concentrations of risk elements (As, Cu, Mn, Ni, Pb, Zn) in alluvial soil, which were measured by a portable X-ray fluorescence analyser (pXRF) in situ (FIELD) and in the laboratory (LABORATORY). Subsequently, regression equations were developed for individual elements through the method of construction of the regression model, which compare the results of pXRF with classical laboratory analysis (ICP-OES). The accuracy of the measurement, expressed by the coefficient of determination (R2), was as follows in the case of FIELD–ICP-OES: Pb (0.96), Zn (0.92), As (0.72), Mn (0.63), Cu (0.31) and Ni (0.01). In the case of LABORATORY–ICP-OES, the coefficients had values: Pb (0.99), Zn (0.98), Cu and Mn (0.89), As (0.88), Ni (0.81). A higher dependence of the relationship was recorded between LABORATORY–ICP-OES than between FIELD–ICP-OES. An excellent relationship was recorded for the elements Pb and Zn, both for FIELD and LABORATORY (R2 higher than 0.90). The elements Cu, Mn and As have a worse tightness in the relationship; however, the results of the model have shown its applicability for common use, e.g., in agricultural practice or in monitoring the quality of the environment. Based on our results, we can say that pXRF instruments can provide highly accurate results for the concentration of risk elements in the soil in real time for some elements and meet the principle of precision agriculture: an efficient, accurate and fast method of analysis.

scholarly journals Land surface model photosynthesis and parameter calibration for boreal sites with adaptive population importance sampler

2019 ◽  
Author(s):  
Jarmo Mäkelä ◽  
Jürgen Knauer ◽  
Mika Aurela ◽  
Andrew Black ◽  
Martin Heimann ◽  
...  
Keyword(s):  
Stomatal Conductance ◽  
Land Surface ◽  
Carbon Fixation ◽  
Gross Primary Production ◽  
Effect Of Temperature ◽  
Coefficient Of Determination ◽  
Surface Model ◽  
Drought Event ◽  
Forest Site ◽  
Delayed Effect

Abstract. We calibrated the JSBACH model with six different stomatal conductance formulations using measurements from 10 FLUXNET coniferous evergreen sites in the Boreal zone. The parameter posterior distributions were generated by adaptive population importance sampler and the optimal values by a simple stochastic optimisation algorithm. The observations used to constrain the model are evapotranspiration (ET) and gross primary production (GPP). We identified the key parameters in the calibration process. These parameters control the soil moisture stress function and the overall rate of carbon fixation. We were able to improve the coefficient of determination and the model bias with all stomatal conductance formulations. There was no clear candidate for the best stomatal conductance model, although certain versions produced better estimates depending on the examined variable (ET, GPP) and the used metric. We were also able to significantly enhance the model behaviour during a drought event in a Finnish Scots pine forest site. The JSBACH model was also modified to use a delayed effect of temperature for photosynthetic activity. This modification enabled the model to correctly time and replicate the springtime increase in GPP (and ET) for conifers throughout the measurements sites used in this study.

Assessment of Moisture Content in Sandy Beach Environments from Multispectral Satellite Imagery

2021 ◽  
Author(s):  
Julie Paprocki ◽  
Nina Stark ◽  
Hans C Graber ◽  
Heidi Wadman ◽  
Jesse E McNinch
Keyword(s):  
Moisture Content ◽  
Laboratory Data ◽  
Field Measurements ◽  
Weather Conditions ◽  
Sandy Beaches ◽  
Percent Error ◽  
Moisture Contents ◽  
Multispectral Satellite Imagery ◽  
Factor C

A framework for estimating moisture content from satellite-based multispectral imagery of sandy beaches was tested under various site conditions and sensors. It utilizes the reflectance of dry soil and an empirical factor c relating reflectance and moisture content for specific sediment. Here, c was derived two ways: first, from in-situ measurements of moisture content and average NIR image reflectance; and second, from laboratory-based measurements of moisture content and spectrometer reflectance. The proposed method was tested at four sandy beaches: Duck, North Carolina, and Cannon Beach, Ocean Cape, and Point Carrew, Yakutat, Alaska. Both measured and estimated moisture content profiles were impacted by site geomorphology. For profiles with uniform slopes, moisture contents ranged from 3.0%-8.0% (Zone 1) and from 8.0%-23.0% (Zone 2). Compared to field measurements, the moisture contents estimated using c calibrated from in-situ and laboratory data resulted in percent error of 3.6%-44.7% and 2.7%-58.6%, respectively. The highest percent error occurred at the transition from Zone 1 to Zone 2. Generally, moisture contents were overestimated in Zone 1 and underestimated in Zone 2, but followed the expected trends based on field measurements. When estimated moisture contents in Zone 1 exceeded 10%, surface roughness, debris, geomorphology, and weather conditions were considered.

scholarly journals Temporal Variation of Chlorophyll-a Concentrations in Highly Dynamic Waters from Unattended Sensors and Remote Sensing Observations

Sensors ◽  
2018 ◽  
Vol 18 (8) ◽  
pp. 2699 ◽  
Author(s):  
Jian Li ◽  
Liqiao Tian ◽  
Qingjun Song ◽  
Zhaohua Sun ◽  
Hongjing Yu ◽  
...  
Keyword(s):  
Remote Sensing ◽  
Water Quality ◽  
Chlorophyll Fluorescence ◽  
Chlorophyll A ◽  
Temporal Variations ◽  
Lake Area ◽  
Short Term ◽  
Chl A ◽  
Spatio Temporal

Monitoring of water quality changes in highly dynamic inland lakes is frequently impeded by insufficient spatial and temporal coverage, for both field surveys and remote sensing methods. To track short-term variations of chlorophyll fluorescence and chlorophyll-a concentrations in Poyang Lake, the largest freshwater lake in China, high-frequency, in-situ, measurements were collected from two fixed stations. The K-mean clustering method was also applied to identify clusters with similar spatio-temporal variations, using remote sensing Chl-a data products from the MERIS satellite, taken from 2003 to 2012. Four lake area classes were obtained with distinct spatio-temporal patterns, two of which were selected for in situ measurement. Distinct daily periodic variations were observed, with peaks at approximately 3:00 PM and troughs at night or early morning. Short-term variations of chlorophyll fluorescence and Chl-a levels were revealed, with a maximum intra-diurnal ratio of 5.1 and inter-diurnal ratio of 7.4, respectively. Using geostatistical analysis, the temporal range of chlorophyll fluorescence and corresponding Chl-a variations was determined to be 9.6 h, which indicates that there is a temporal discrepancy between Chl-a variations and the sampling frequency of current satellite missions. An analysis of the optimal sampling strategies demonstrated that the influence of the sampling time on the mean Chl-a concentrations observed was higher than 25%, and the uncertainty of any single Terra/MODIS or Aqua/MODIS observation was approximately 15%. Therefore, sampling twice a day is essential to resolve Chl-a variations with a bias level of 10% or less. The results highlight short-term variations of critical water quality parameters in freshwater, and they help identify specific design requirements for geostationary earth observation missions, so that they can better address the challenges of monitoring complex coastal and inland environments around the world.

scholarly journals Evapotranspiration simulated by CRITERIA and AquaCrop models in stony soils

2015 ◽  
Vol 10 (2) ◽  
pp. 67 ◽  
Author(s):  
Pasquale Campi ◽  
Francesca Modugno ◽  
Alejandra Navarro ◽  
Fausto Tomei ◽  
Giulia Villani ◽  
...  
Keyword(s):  
Statistical Tests ◽  
Efficiency Index ◽  
Balance Model ◽  
Coefficient Of Determination ◽  
Wheat Crop ◽  
Area Index ◽  
Aquacrop Model ◽  
Daily Evapotranspiration ◽  
Daily Scale ◽  
The Impact

The performance of a water balance model is also based on the ability to correctly perform simulations in heterogeneous soils. The objective of this paper is to test CRITERIA and AquaCrop models in order to evaluate their suitability in estimating evapotranspiration at the field scale in two types of soil in the Mediterranean region: non-stony and stony soil. The first step of the work was to calibrate both models under the non-stony conditions. The models were calibrated by using observations on wheat crop (leaf area index or canopy cover, and phenological stages as a function of degree days) and pedo-climatic measurements. The second step consisted in the analysing the impact of the soil type on the models performances by comparing simulated and measured values. The outputs retained in the analysis were soil water content (at the daily scale) and crop evapotranspiration (at two time scales: daily and crop season). The model performances were evaluated through four statistical tests: normalised difference (D%) at the seasonal time scale; and relative root mean square error (RRMSE), efficiency index (EF), coefficient of determination (r<sup>2</sup>) at the daily scale. At the seasonal scale, values of D% were less than 15% in stony and on-stony soils, indicating a good performance attained by both models. At the daily scale, the RRMSE values (2) indicate the inadequacy of AquaCrop to simulate correctly daily evapotranspiration. The higher performance of CRITERIA model to simulate daily evapotranspiration in stony soils, is due to the soil submodel, which requires the percentage skeleton as an input, while AquaCrop model takes into account the presence of skeleton by reducing the soil volume.

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