scholarly journals Ontology-Based Process Modelling-with Examples of Physical Topologies

Processes ◽  
2021 ◽  
Vol 9 (4) ◽  
pp. 592
Author(s):  
Heinz A Preisig

Reductionism and splitting application domain into disciplines and identify the smallest required model-granules, termed ”basic entity” combined with systematic construction of the behaviour equations for the basic entities, yields a systematic approach to process modelling. We do not aim toward a single modelling domain, but we enable to address specific application domains and object inheritance. We start with reductionism and demonstrate how the basic entities are depending on the targeted application domain. We use directed graphs to capture process models, and we introduce a new concept, which we call ”tokens” that enables us to extend the context beyond physical systems. The network representation is hierarchical so as to capture complex systems. The interacting basic entities are defined in the leave nodes of the hierarchy, making the overall model the interacting networks in the leave nodes. Multi-disciplinary and multi-scale models result in a network of networks. We identify two distinct network communication ports, namely ports that exchange tokens and ports that transfer information of tokens in accumulators. An ontology captures the structural elements and the applicable rules and defines the syntax to establish the behaviour equations. Linking the behaviours to the basic entities defines the alphabet of a graphical language. We use this graphical language to represent processes, which has proven to be efficient and valuable. A set of three examples demonstrates the power of the graphical language. The Process Modelling framework (ProMo) implements the ontology-centred approach to process modelling and uses the graphical language to construct process models.

2020 ◽  
Vol 17 (166) ◽  
pp. 20200230 ◽  
Author(s):  
W. S. Hart ◽  
P. K. Maini ◽  
C. A. Yates ◽  
R. N. Thompson

Multi-scale epidemic forecasting models have been used to inform population-scale predictions with within-host models and/or infection data collected in longitudinal cohort studies. However, most multi-scale models are complex and require significant modelling expertise to run. We formulate an alternative multi-scale modelling framework using a compartmental model with multiple infected stages. In the large-compartment limit, our easy-to-use framework generates identical results compared to previous more complicated approaches. We apply our framework to the case study of influenza A in humans. By using a viral dynamics model to generate synthetic patient-level data, we explore the effects of limited and inaccurate patient data on the accuracy of population-scale forecasts. If infection data are collected daily, we find that a cohort of at least 40 patients is required for a mean population-scale forecasting error below 10%. Forecasting errors may be reduced by including more patients in future cohort studies or by increasing the frequency of observations for each patient. Our work, therefore, provides not only an accessible epidemiological modelling framework but also an insight into the data required for accurate forecasting using multi-scale models.


Animals ◽  
2020 ◽  
Vol 10 (12) ◽  
pp. 2454
Author(s):  
Yue Sun ◽  
Yanze Yu ◽  
Jinhao Guo ◽  
Minghai Zhang

Single-scale frameworks are often used to analyze the habitat selections of species. Research on habitat selection can be significantly improved using multi-scale models that enable greater in-depth analyses of the scale dependence between species and specific environmental factors. In this study, the winter habitat selection of red deer in the Gogostaihanwula Nature Reserve, Inner Mongolia, was studied using a multi-scale model. Each selected covariate was included in multi-scale models at their “characteristic scale”, and we used an all subsets approach and model selection framework to assess habitat selection. The results showed that: (1) Univariate logistic regression analysis showed that the response scale of red deer to environmental factors was different among different covariate. The optimal scale of the single covariate was 800–3200 m, slope (SLP), altitude (ELE), and ratio of deciduous broad-leaved forests were 800 m in large scale, except that the farmland ratio was 200 m in fine scale. The optimal scale of road density and grassland ratio is both 1600 m, and the optimal scale of net forest production capacity is 3200 m; (2) distance to forest edges, distance to cement roads, distance to villages, altitude, distance to all road, and slope of the region were the most important factors affecting winter habitat selection. The outcomes of this study indicate that future studies on the effectiveness of habitat selections will benefit from multi-scale models. In addition to increasing interpretive and predictive capabilities, multi-scale habitat selection models enhance our understanding of how species respond to their environments and contribute to the formulation of effective conservation and management strategies for ungulata.


2021 ◽  
Author(s):  
Shan Wang ◽  
Leonardo C. Ruspini ◽  
Paal-Eric Oeren ◽  
Stefanie Van Offenwert ◽  
Tom Bultreys

Axioms ◽  
2021 ◽  
Vol 10 (2) ◽  
pp. 102
Author(s):  
Maya Briani ◽  
Emiliano Cristiani ◽  
Paolo Ranut

In this paper, we propose two models describing the dynamics of heavy and light vehicles on a road network, taking into account the interactions between the two classes. The models are tailored for two-lane highways where heavy vehicles cannot overtake. This means that heavy vehicles cannot saturate the whole road space, while light vehicles can. In these conditions, the creeping phenomenon can appear, i.e., one class of vehicles can proceed even if the other class has reached the maximal density. The first model we propose couples two first-order macroscopic LWR models, while the second model couples a second-order microscopic follow-the-leader model with a first-order macroscopic LWR model. Numerical results show that both models are able to catch some second-order (inertial) phenomena such as stop and go waves. Models are calibrated by means of real data measured by fixed sensors placed along the A4 Italian highway Trieste–Venice and its branches, provided by Autovie Venete S.p.A.


2021 ◽  
Author(s):  
Kor de Jong ◽  
Marc van Kreveld ◽  
Debabrata Panja ◽  
Oliver Schmitz ◽  
Derek Karssenberg

<p>Data availability at global scale is increasing exponentially. Although considerable challenges remain regarding the identification of model structure and parameters of continental scale hydrological models, we will soon reach the situation that global scale models could be defined at very high resolutions close to 100 m or less. One of the key challenges is how to make simulations of these ultra-high resolution models tractable ([1]).</p><p>Our research contributes by the development of a model building framework that is specifically designed to distribute calculations over multiple cluster nodes. This framework enables domain experts like hydrologists to develop their own large scale models, using a scripting language like Python, without the need to acquire the skills to develop low-level computer code for parallel and distributed computing.</p><p>We present the design and implementation of this software framework and illustrate its use with a prototype 100 m, 1 h continental scale hydrological model. Our modelling framework ensures that any model built with it is parallelized. This is made possible by providing the model builder with a set of building blocks of models, which are coded in such a manner that parallelization of calculations occurs within and across these building blocks, for any combination of building blocks. There is thus full flexibility on the side of the modeller, without losing performance.</p><p>This breakthrough is made possible by applying a novel approach to the implementation of the model building framework, called asynchronous many-tasks, provided by the HPX C++ software library ([3]). The code in the model building framework expresses spatial operations as large collections of interdependent tasks that can be executed efficiently on individual laptops as well as computer clusters ([2]). Our framework currently includes the most essential operations for building large scale hydrological models, including those for simulating transport of material through a flow direction network. By combining these operations, we rebuilt an existing 100 m, 1 h resolution model, thus far used for simulations of small catchments, requiring limited coding as we only had to replace the computational back end of the existing model. Runs at continental scale on a computer cluster show acceptable strong and weak scaling providing a strong indication that global simulations at this resolution will soon be possible, technically speaking.</p><p>Future work will focus on extending the set of modelling operations and adding scalable I/O, after which existing models that are currently limited in their ability to use the computational resources available to them can be ported to this new environment.</p><p>More information about our modelling framework is at https://lue.computationalgeography.org.</p><p><strong>References</strong></p><p>[1] M. Bierkens. Global hydrology 2015: State, trends, and directions. Water Resources Research, 51(7):4923–4947, 2015.<br>[2] K. de Jong, et al. An environmental modelling framework based on asynchronous many-tasks: scalability and usability. Submitted.<br>[3] H. Kaiser, et al. HPX - The C++ standard library for parallelism and concurrency. Journal of Open Source Software, 5(53):2352, 2020.</p>


2021 ◽  
Author(s):  
Gianluca Boleto ◽  
Luca Oneto ◽  
Matteo Cardellini ◽  
Marco Maratea ◽  
Mauro Vallati ◽  
...  
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Author(s):  
Yazan N. Billeh ◽  
Binghuang Cai ◽  
Sergey L. Gratiy ◽  
Kael Dai ◽  
Ramakrishnan Iyer ◽  
...  

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