scholarly journals Crowding-Activity Coupling Effect on Conformational Change of a Semi-Flexible Polymer

Polymers ◽  
2019 ◽  
Vol 11 (6) ◽  
pp. 1021 ◽  
Author(s):  
Xiuli Cao ◽  
Bingjie Zhang ◽  
Nanrong Zhao

The behavior of a polymer in a passive crowded medium or in a very dilute active bath has been well studied, while a polymer immersed in an environment featured by both crowding and activity remains an open problem. In this paper, a systematic Langevin simulation is performed to investigate the conformational change of a semi-flexible chain in a concentrated solution packed with spherical active crowders. A very novel shrinkage-to-swelling transition is observed for a polymer with small rigidity. The underlying phase diagram is constructed in the parameter space of active force and crowder size. Moreover, the variation of the polymer gyration radius demonstrates a non-monotonic dependence on the dynamical persistence length of the active particle. Lastly, the activity-crowding coupling effect in different crowder size baths is clarified. In the case of small crowders, activity strengthens the crowding-induced shrinkage to the chain. As crowder size increases, activity turns out to be a contrasting factor to crowding, resulting in a competitive shrinkage and swelling. In the large size situation, the swelling effect arising from activity eventually becomes dominant. The present study provides a deeper understanding of the unusual behavior of a semi-flexible polymer in an active and crowded medium, associated with the nontrivial activity-crowding coupling and the cooperative crowder size effect.

1996 ◽  
Vol 463 ◽  
Author(s):  
John F. Marko

ABSTRACTThe DNA double helix is a semi-flexible polymer with twist rigidity. Its bending elasticity gives rise to entropie polymer elasticity, which can be precisely studied in single-molecule experiments. DNA's twist rigidity causes it to wrap around itself, or ‘supercoil’, when it is sufficiently twisted; thermal fluctuations destabilize supercoiling for DNAs twisted fewer than once per twist persistence length. Twisted DNAs under tension, braided DNAs, and the internal dynamics of supercoiled DNAs are discussed. The interplay between braiding and supercoiling free energy is argued to be important for the decatenation of duplicated DNAs in prokaryote cells.


Soft Matter ◽  
2018 ◽  
Vol 14 (5) ◽  
pp. 742-753 ◽  
Author(s):  
Reinhard Sigel

The statistical presence of kinks which form defects in semi-flexible polymer chains leads to a polydispersity in the effective persistence length.


Polymer ◽  
2019 ◽  
Vol 172 ◽  
pp. 83-90 ◽  
Author(s):  
Xiao Yang ◽  
Qing-Hui Yang ◽  
Yu Fu ◽  
Fan Wu ◽  
Jian-Hua Huang ◽  
...  

2020 ◽  
Vol 46 (2) ◽  
pp. 223-231
Author(s):  
Hongchang Wang ◽  
Lingyun Gu ◽  
Rongri Tan ◽  
Xiaotian Ma ◽  
Xun Zhou ◽  
...  

2013 ◽  
Vol 102 (3) ◽  
pp. 38003 ◽  
Author(s):  
C. J. Cyron ◽  
K. W. Müller ◽  
K. M. Schmoller ◽  
A. R. Bausch ◽  
W. A. Wall ◽  
...  

Author(s):  
Kei W. Müller ◽  
Christian J. Cyron ◽  
Wolfgang A. Wall

The eukaryotic cytoskeleton is a protein fibre network mainly consisting of the semi-flexible biopolymer F-actin, microtubules and intermediate filaments. It is well known to exhibit a pronounced structural polymorphism, which enables intracellular processes such as cell adhesion, cell motility and cell division. We present a computational study on cross-linked networks of semi-flexible polymers, which offers a detailed analysis of the network structure and phase transitions from one morphology to another. We elaborate the morphological differences, their mechanical implications and the order of the observed phase transitions. Finally, we present a perspective on how the information gained in our simulations can be exploited in order to build both flexible and accurate, microstructurally informed, homogenized constitutive models of the cytoskeleton.


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