scholarly journals Transcriptome Response of Metallicolous and a Non-Metallicolous Ecotypes of Noccaea goesingensis to Nickel Excess

Plants ◽  
2020 ◽  
Vol 9 (8) ◽  
pp. 951
Author(s):  
Agnieszka Domka ◽  
Piotr Rozpądek ◽  
Rafał Ważny ◽  
Roman Jan Jędrzejczyk ◽  
Magdalena Hubalewska-Mazgaj ◽  
...  
Keyword(s):  
Culture Medium ◽  
Shoot Biomass ◽  
Nickel Concentration ◽  
Rna Seq ◽  
Metal Transporters ◽  
Expression Of Genes ◽  
Starting Point ◽  
Accumulation Capacity ◽  
Transcriptome Response

Root transcriptomic profile was comparatively studied in a serpentine (TM) and a non-metallicolous (NTM) population of Noccaea goesingensis in order to investigate possible features of Ni hyperaccumulation. Both populations were characterised by contrasting Ni tolerance and accumulation capacity. The growth of the TM population was unaffected by metal excess, while the shoot biomass production in the NTM population was significantly lower in the presence of Ni in the culture medium. Nickel concentration was nearly six- and two-fold higher in the shoots than in the roots of the TM and NTM population, respectively. The comparison of root transcriptomes using the RNA-seq method indicated distinct responses to Ni treatment between tested ecotypes. Among differentially expressed genes, the expression of IRT1 and IRT2, encoding metal transporters, was upregulated in the TM population and downregulated/unchanged in the NTM ecotype. Furthermore, differences were observed among ethylene metabolism and response related genes. In the TM population, the expression of genes including ACS7, ACO5, ERF104 and ERF105 was upregulated, while in the NTM population, expression of these genes remained unchanged, thus suggesting a possible regulatory role of this hormone in Ni hyperaccumulation. The present results could serve as a starting point for further studies concerning the plant mechanisms responsible for Ni tolerance and accumulation.

Abstract MP259: The Role Of Sertad4 In Pathological Cardiac Remodeling

2021 ◽  
Vol 129 (Suppl_1) ◽  
Author(s):  
Matthew Stratton ◽  
Ashley Francois ◽  
Oscar Bermeo-Blanco ◽  
Alessandro Canella ◽  
Lynn Marcho ◽  
...  
Keyword(s):  
Cardiac Remodeling ◽  
Cardiac Fibrosis ◽  
Systolic Function ◽  
Myocardial Infarct ◽  
Proteasome Inhibition ◽  
Rna Seq ◽  
Expression Of Genes ◽  
M Phase ◽  
Tgf Β1

Over 6 million Americans suffer from heart failure (HF) while the 5-year mortality rate following first admission for HF is over 40%. Cardiac fibrosis is a clinical hallmark of HF, regardless of the initiating pathology and is thought to contribute to disease progression. Using an epigenomics discovery approach, we uncovered a nuclear protein, Sertad4, as a potential anti-fibrotic target. Our data indicate that Sertad4 is a positive regulator of fibroblast activation. Specifically, cultured cardiac fibroblast experiments demonstrate that Sertad4 targeting with shRNAs blocks fibroblast proliferation and causes cells to arrest in the G2/M phase of the cell cycle. Also, shRNA targeting of Sertad4 dramatically blocked activation of myofibroblast differentiation genes (αSMA/POSTN/COL1A1). Mechanistically, these effects appear to be mediated by Sertad4 regulation of SMAD2 protein stability in the presence of TGF-β1 stimulation as demonstrated by proteasome inhibition experiments. RNA-seq analysis indicate that Sertad4 also regulates the expression of genes involved in ubiquitination and proteasome degradation. Next, we sought to determine the effect of global Sertad4 knockout on post-myocardial infarct (MI) remodeling and cardiac function in mice. After 4 weeks of permanent LAD ligation, echocardiography was performed to measure systolic function. Relative to wild-type (WT) controls, the Sertad4 KO mice showed preserved systolic function as evident by improved ejection fraction (WT 14.4 +/- 3.6 vs. KO 33.9+/-5.9, p=0.035) and fractional shortening (WT 6.5 +/- 1.7 vs. KO 16.4 +/- 3.4, p=0.046). β-gal staining in the Sertad4/LacZ reporter mouse subjected to MI showed robust Sertad4/LacZ expression in the ischemic scar and boarder-zone with almost no expression in control hearts. This data supports the notion that Sertad4 has a key role in cardiac remodeling in response to ischemic injury.

scholarly journals Drought-Induced Root Pressure in Sorghum bicolor

2021 ◽  
Vol 12 ◽  
Author(s):  
Sarah Tepler Drobnitch ◽  
Louise H. Comas ◽  
Nora Flynn ◽  
Jorge Ibarra Caballero ◽  
Ryan W. Barton ◽  
...  
Keyword(s):  
Sorghum Bicolor ◽  
Biomass Production ◽  
Crop Production ◽  
Shoot Biomass ◽  
Cellular Transport ◽  
Rna Seq ◽  
Root Pressure ◽  
Coarse Root ◽  
Gene Transcripts

Root pressure, also manifested as profusive sap flowing from cut stems, is a phenomenon in some species that has perplexed biologists for much of the last century. It is associated with increased crop production under drought, but its function and regulation remain largely unknown. In this study, we investigated the initiation, mechanisms, and possible adaptive function of root pressure in six genotypes of Sorghum bicolor during a drought experiment in the greenhouse. We observed that root pressure was induced in plants exposed to drought followed by re-watering but possibly inhibited by 100% re-watering in some genotypes. We found that root pressure in drought stressed and re-watered plants was associated with greater ratio of fine: coarse root length and shoot biomass production, indicating a possible role of root allocation in creating root pressure and adaptive benefit of root pressure for shoot biomass production. Using RNA-Seq, we identified gene transcripts that were up- and down-regulated in plants with root pressure expression, focusing on genes for aquaporins, membrane transporters, and ATPases that could regulate inter- and intra-cellular transport of water and ions to generate positive xylem pressure in root tissue.

scholarly journals Knockout of the OsNAC006 Transcription Factor Causes Drought and Heat Sensitivity in Rice

2020 ◽  
Vol 21 (7) ◽  
pp. 2288 ◽  
Author(s):  
Bo Wang ◽  
Zhaohui Zhong ◽  
Xia Wang ◽  
Xiangyan Han ◽  
Deshui Yu ◽  
...  
Keyword(s):  
Genetic Manipulation ◽  
Heat Sensitivity ◽  
Rna Seq ◽  
Oxidoreductase Activity ◽  
Breeding Programs ◽  
Nac Transcription Factors ◽  
Cofactor Binding ◽  
Expression Of Genes ◽  
Indole 3 Acetic Acid

Rice (Oryza sativa) responds to various abiotic stresses during growth. Plant-specific NAM, ATAF1/2, and CUC2 (NAC) transcription factors (TFs) play an important role in controlling numerous vital growth and developmental processes. To date, 170 NAC TFs have been reported in rice, but their roles remain largely unknown. Herein, we discovered that the TF OsNAC006 is constitutively expressed in rice, and regulated by H2O2, cold, heat, abscisic acid (ABA), indole-3-acetic acid (IAA), gibberellin (GA), NaCl, and polyethylene glycol (PEG) 6000 treatments. Furthermore, knockout of OsNAC006 using the CRISPR-Cas9 system resulted in drought and heat sensitivity. RNA sequencing (RNA-seq) transcriptome analysis revealed that OsNAC006 regulates the expression of genes mainly involved in response to stimuli, oxidoreductase activity, cofactor binding, and membrane-related pathways. Our findings elucidate the important role of OsNAC006 in drought responses, and provide valuable information for genetic manipulation to enhance stress tolerance in future plant breeding programs.

scholarly journals Crucial Role of Salmonella Genomic Island 1 Master Activator in Parasitism of IncC plasmids

2020 ◽  
Author(s):  
Romain Durand ◽  
Kévin T. Huguet ◽  
Nicolas Rivard ◽  
Nicolas Carraro ◽  
Sébastien Rodrigue ◽  
...  
Keyword(s):  
Genomic Island ◽  
Transfer Functions ◽  
Integrative Approach ◽  
Rna Seq ◽  
Conjugative Plasmids ◽  
Expression Of Genes ◽  
Reporter Assays ◽  
Complete Set ◽  
In Trans

ABSTRACTIncC conjugative plasmids and the multiple variants of Salmonella Genomic Island 1 (SGI1) are two functionally interacting families of mobile genetic elements commonly associated with multidrug resistance in Gammaproteobacteria. SGI1 and its siblings are specifically mobilised in trans by IncC conjugative plasmids. Conjugative transfer of IncC plasmids is activated by the plasmid-encoded master activator AcaCD. SGI1 carries five AcaCD-responsive promoters that drive the expression of genes involved in its excision, replication, and mobilisation. SGI1 encodes an AcaCD homologue, the transcriptional activator complex SgaCD (also known as FlhDCSGI1) that seems to recognise and activate the same SGI1 promoters. Here, we investigated the relevance of SgaCD in SGI1’s lifecycle. Mating assays revealed the requirement for SgaCD and its IncC-encoded counterpart AcaCD in the mobilisation of SGI1. An integrative approach combining ChIP-exo, Cappable-seq, and RNA-seq confirmed that SgaCD activates each of the 18 AcaCD-responsive promoters driving the expression of the plasmid transfer functions. A comprehensive analysis of the activity of the complete set of AcaCD-responsive promoters in both SGI1 and IncC plasmid was performed through reporter assays. qPCR and flow cytometry assays revealed that SgaCD is essential for the excision and replication of SGI1, and the destabilisation of the helper IncC plasmid.

scholarly journals The Bacillus Virulome in Endophthalmitis

2020 ◽  
Author(s):  
Phillip S. Coburn ◽  
Frederick C. Miller ◽  
Morgan A. Enty ◽  
Craig Land ◽  
Austin L. LaGrow ◽  
...  
Keyword(s):  
Murine Model ◽  
Manganese Superoxide Dismutase ◽  
Current Treatment ◽  
Treatment Modalities ◽  
Rna Seq ◽  
Expression Of Genes ◽  
Manganese Superoxide ◽  
New Treatment

AbstractBacillus cereus is recognized as a causative agent of gastrointestinal syndromes, but can also cause a devastating form of intraocular infection known as endophthalmitis. We have previously reported that the PlcR/PapR master virulence factor regulator system regulates intraocular virulence, and that the S-layer protein (SlpA) contributes to the severity of B. cereus endophthalmitis. To begin to better understand the role of other B. cereus virulence genes in endophthalmitis, expression levels of a subset of factors was measured at the midpoint of disease progression in a murine model of experimental endophthalmitis by RNA-Seq. Several cytolytic toxins were expressed at significantly higher levels in vivo than in BHI. The virulence regulators codY, gntR, and nprR were also expressed in vivo. However, at this timepoint, plcR/papR was not detectable, we previously reported that a B. cereus mutant deficient in PlcR was attenuated in the eye. The motility-related genes fla, fliF, and motB, and the chemotaxis-related gene cheA were detected during infection. We have shown previously that motility and chemotaxis phenotypes are important in B. cereus endophthalmitis. The sodA2 variant of manganese superoxide dismutase was the most highly expression gene in vivo, suggesting that this gene is criticial for intraocular survival, potentially through inhibition of neutrophil activity. Expression of the surface layer protein gene, slpA, an activator of Toll-like receptors (TLR) −2 and −4, and a potent contributor to intraocular inflammation and disease severvity, was also detected during infection, albeit at low levels. In summary, genes expressed in a mouse model of Bacillus endophthalmitis might prove to play crucial roles in the unique virulence of B. cereus endophthalmitis, and serve as candidates for novel therapies designed attenuate the severity of this often blinding infection.Impact statementB. cereus causes a potent and rapid infection of the eye that usually results in blindness or enucleation, even with the utilization of current treatment modalities. This necessitates the development of new treatment modalities based on new targets. To begin to better define those B. cereus factors with roles in intraocular infection, we analyzed the expression of genes with both known and hypothesized roles in intraocular infection at the midpoint of infection using a murine model of Bacillus endophthalmitis. Potentially targetable candidate genes were demonstrated to be expressed in vivo, which suggests that these genes might contribute to the unique virulence of B. cereus endophthalmitis. Importantly, our results begin to define the virulome of B. cereus in intraocular infections and identify previously uncharacterized factors with potential roles in the severity and outcome of Bacillus endophthalmitis.

scholarly journals Phosphorylation of LXRα impacts atherosclerosis regression by modulating monocyte/macrophage trafficking

2018 ◽  
Author(s):  
Elina Shrestha ◽  
Maud Voisin ◽  
Tessa J. Barrett ◽  
Hitoo Nishi ◽  
David J. Cantor ◽  
...  
Keyword(s):  
Cell Movement ◽  
Physiological Role ◽  
Favorable Effect ◽  
Atherosclerotic Plaques ◽  
Rna Seq ◽  
Phosphorylated Form ◽  
Expression Of Genes ◽  
Normal Glucose ◽  
Plaque Regression

AbstractLXRα activation in macrophages enhances regression of atherosclerotic plaques in mice by regulating genes crucial for cholesterol efflux, cell motility and inflammation. Diabetes, however, impairs plaque regression in mice. LXRα is phosphorylated at serine 198 (pS198), which affects the expression of genes controlling inflammation, lipid metabolism and cell movement. We hypothesize that LXRα function is affected by hyperglycemia through changes in LXRα pS198. Indeed, macrophages cultured in diabetes relevant high glucose versus normal glucose display alterations in LXR-dependent gene expression and increased LXRα pS198. We therefore examined the consequence of disrupting LXRα phosphorylation (S196A in mouse LXRα) during regression of atherosclerosis in normal and diabetic mice. We find that phosphorylation deficient LXRα S196A reduces macrophage retention in plaques in diabetes, which is predicted to be anti-atherogenic and enhance plaque regression. However, this favorable effect on regression is masked by increased monocyte infiltration in the plaque attributed to leukocytosis in LXRα S196A mice. RNA-seq of plaque macrophages from diabetic S196A mice shows increased expression of chemotaxis and decreased expression of cell adhesion genes, consistent with reduced macrophage retention by LXRα S196A. Thus, the non-phosphorylated form of LXRα precludes macrophage retention in the plaque. Our study provides the first evidence for a physiological role of LXRα phosphorylation in modulating atherosclerosis regression. Compounds that prevent LXRα phosphorylation or ligands that induce the conformation of non-phosphorylated LXRα may selectively enhance macrophage emigration from atherosclerotic plaques.

scholarly journals AXIN2 reduces the survival of porcine induced pluripotent stem cells (piPSCs)

2021 ◽  
Author(s):  
rui zhang ◽  
Shuai Yu ◽  
Qiaoyan Shen ◽  
Wenxu Zhao ◽  
Juqing Zhang ◽  
...  
Keyword(s):  
Cell Cycle ◽  
Stem Cells ◽  
Cell Proliferation ◽  
Pluripotent Stem Cells ◽  
Culture Medium ◽  
Wnt Signaling Pathway ◽  
Rna Seq ◽  
Expression Of Genes ◽  
Induced Pluripotent ◽  
Effect Of Inhibitors

Abstract BackgroundThe establishment of porcine pluripotent stem cells (piPSCs) is still a critical topic and challenging issue. However, all piPSCs are extremely sensitive to changes of the culture conditions.In addition, the side effect of inhibitors in culture medium confine the pluripotency and practicability. This study aimed to investigate the roles of AXIN in piPSCs and further explore the mechanism. Here, porcine AXIN1 gene and AXIN2 were knockdown, cloned, and overexpressed in piPSCs. Digital RNA-seq was performed to explore the mechanism of cell proliferation and anti-apoptosis. ResultsHere, we found (1): overexpression of the porcine AXIN2 gene significantly reduce the survivability of piPSCs, meanwhile wreck the pluripotency of piPSCs; (2): The Digital RNA-seq analysis reveals that AXIN2, as a negative effector of the WNT signaling pathway, whom after knockdown enhances the expression of genes involved in cell cycle such as CCND1, and reduced the expression of genes related to cell differentiation, cell death, and cell apoptosis. ConclusionAXIN2 could reduce the pluripotency and survival of piPSCs and also provided a potential to simplify the cultrue medium.

scholarly journals Histone Acetyltransferase Mof Affects the Progression of DSS-Induced Colitis

2018 ◽  
Vol 47 (5) ◽  
pp. 2159-2169 ◽  
Author(s):  
Yang Yang ◽  
Jingyun Guan ◽  
Abdul Sami Shaikh ◽  
Yiran Liang ◽  
Lichao Sun ◽  
...  
Keyword(s):  
Inflammatory Response ◽  
Signaling Pathway ◽  
Histone Acetyltransferase ◽  
Experimental Colitis ◽  
Conditional Knockout ◽  
Rna Seq ◽  
Histone H4 ◽  
Expression Of Genes ◽  
Differential Expression Of Genes

Background/Aims: Histone acetylation has been demonstrated to be associated with inflammation response. Histone acetyltransferase (HAT) Mof, specifically acetylating lysine 16 of histone H4 (H4K16), has been reported to regulate T cell differentiation. In addition, it has been suggested that acetylation of H4K16 is associated with the inflammatory response. We evaluated the role and potential mechanism of Mof in the development of experimental colitis. Methods: We used Mof conditional knockout mice to study the role of Mof in dextran sulfate sodium (DSS)-induced colitis and detected the differential expression of genes due to Mof deficiency involved in the inflammatory response, particularly the Th17 signaling pathway, by western blotting, quantitative PCR and RNA sequencing (RNA-seq). Results: A significant elevation of Mof was observed in colonic tissues of mice with DSS-induced colitis. Mof deficiency alleviated the severity of DSS- induced colitis in mice. We found that Th17 signaling pathway associated genes, including Il17a, Il22, RORγt, RORα, Stat3, TGF-β 1, and Il6, were downregulated in colon tissues with Mof deficiency. RNA-seq data analysis suggested that 68 genes were related to inflammatory response processing and 47 genes were downregulated in Mof defective colon tissues. Conclusion: Our study demonstrated that HAT Mof is involved in the development of colitis, and the lack of Mof ameliorates DSS-induced colitis in mice.

scholarly journals Salt-Induced Changes in Antioxidative Enzyme Activities in Shoot Tissues of Two Atriplex Varieties

2013 ◽  
Vol 41 (1) ◽  
pp. 115 ◽  
Author(s):  
Salma SAI KACHOUT ◽  
Khaoula JAFFEL HAMZA ◽  
Najoua KARRAY BOURAOUI ◽  
Jean Claude LECLERC ◽  
Zeineb OUERGHI
Keyword(s):  
Oxidative Stress ◽  
Salt Stress ◽  
Antioxidant Enzyme ◽  
Culture Medium ◽  
General Increase ◽  
Tissue Concentrations ◽  
Starting Point ◽  
Antioxidative Enzyme Activities ◽  
Induced Changes

  This study examined the influence of salt levels on antioxidant activity and content of carotenoids and anthocyanins of the A. hortensis leaves using two varieties: green orach (var. purpurea ) and red orach (var. rubra). Seeds of Atriplex were exposed to 0, 90, 180 and 260 mM NaCl for 3 months and seeds were sown in an earthen pot. Overall levels of ascorbate peroxidase (APX) and glutathione reductase (GR) activity were significantly elevated. Salt stress caused a significant decline in tissue concentrations of catalase (CAT) and superoxide dismutase (SOD). However, 90 mM NaCl did not modify these parameters, which remains similar to control values. Activities of APX and CAT were increase whether the shoots of A. hortensis var. purpurea were grown in the presence of 180 mM NaCl. Thus although some indications of oxidative stress accompany exposure of this salt-tolerant Atriplex varieties to salinity, mechanisms appear to exist within its shoot tissue to permit the tolerance of such oxidative stress. High salt concentration in the culture medium provokes oxidative damage in Atriplex leaves and induces a general increase in antioxidant enzyme activity. In particular, NaCl toxicity decreased content of carotenoids. It also decreased the concentration of anthocyanin pigments in leaves of Atriplex. This work therefore provides a starting point towards a better understanding of the role of antioxidant enzyme in the plant response against salt stress.

INTERPRETATION OF SINO-RUSSIAN CULTURE AND HUMANITIES COOPERATION IN THE NEW ERA

2020 ◽  
Vol 10 (3) ◽  
pp. 186-193
Author(s):  
REN YANYAN ◽  
Keyword(s):  
Current Status ◽  
Human Relations ◽  
New Era ◽  
Russian Culture ◽  
The People ◽  
Starting Point ◽  
Cooperative Partnership ◽  
Belt And Road ◽  
The Belt And Road

The friendship between nations lies in the mutual affinity of the people, and the people’s affinity lies in the communion of hearts. The cultural and humanities cooperation between China and Russia has a long history. In recent years, under the role of the“Belt and Road” initiative, the SCO, and the Sino-Russian Humanities Cooperation Committee, Sino-Russian culture and humanities cooperation has continued to deepen. Entering a new era, taking the opportunity to promote Sino-Russian relations into a “new era China-Russia comprehensive strategic cooperative partnership”, the development of human relations between the two countries has entered a new historical starting point, while also facing a series of problems and challenges. This article is based on the current status of Sino-Russian human relations in the new era, interprets the characteristics of Sino-Russian human relations in the new era, analyzes the problems and challenges of Sino-Russian human relations in the new era, and tries to propose solutions and solutions with a view to further developing Sino-Russian cultural and humanities relations in the new era. It is a useful reference, and provides a reference for future related research, and ultimately helps the Sino-Russian cultural and humanities relations in the new era to be stable and far-reaching.

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