scholarly journals Chikungunya Virus Transmission at Low Temperature by Aedes albopictus Mosquitoes

Pathogens ◽  
2019 ◽  
Vol 8 (3) ◽  
pp. 149 ◽  
Author(s):  
B. M. C. Randika Wimalasiri-Yapa ◽  
Liesel Stassen ◽  
Wenbiao Hu ◽  
Laith Yakob ◽  
Elizabeth A. McGraw ◽  
...  
Keyword(s):  
South African ◽  
Aedes Albopictus ◽  
Post Infection ◽  
Chikungunya Virus ◽  
Virus Transmission ◽  
Early Time ◽  
Vero Cells ◽  
Ambient Temperatures ◽  
Time Points ◽  
Central South

Aedes albopictus is an important vector of chikungunya virus (CHIKV). In Australia, Ae. albopictus is currently only known to be present on the islands of the Torres Strait but, should it invade the mainland, it is projected to spread to temperate regions. The ability of Australian Ae. albopictus to transmit CHIKV at the lower temperatures typical of temperate areas has not been assessed. Ae. albopictus mosquitoes were orally challenged with a CHIKV strain from either Asian or East/Central/South African (ECSA) genotypes (107 pfu/mL), and maintained at a constant temperature of either 18 °C or 28 °C. At 3- and 7-days post-infection (dpi), CHIKV RNA copies were quantified in mosquito bodies, and wings and legs using real time polymerase chain reaction (qRT-PCR), while the detection of virus in saliva (a proxy for transmission) was performed by amplification in cell culture followed by observation of cytopathic effect in Vero cells. Of the ≥95% of Ae. albopictus that survived to 7 dpi, all mosquitoes became infected and showed body dissemination of CHIKV at both temperatures and time points. Both the Asian and ECSA CHIKV genotypes were potentially transmissible by Australian Ae. albopictus at 28 °C within 3 days of oral challenge. In contrast, at 18 °C none of the mosquitoes showed evidence of ability to transmit either genotype of CHIKV at 3 dpi. Further, at 18 °C only Ae. albopictus infected with the ECSA genotype showed evidence of virus in saliva at 7 dpi. Overall, infection with the ECSA CHIKV genotype produced higher virus loads in mosquitoes compared to infection with the Asian CHIKV genotype. Our results suggest that lower ambient temperatures may impede transmission of some CHIKV strains by Ae. albopictus at early time points post infection.

scholarly journals Molecular Characterization of Chikungunya Virus Isolates From Two Localized Outbreaks During 2014-2019 in Kerala, India

2021 ◽  
Author(s):  
Anukumar Balakrishnan ◽  
Asia Devi Thounaojam ◽  
Aishwarya Babu ◽  
Jijo Koshy ◽  
Nikhil T L ◽  
...  
Keyword(s):  
South African ◽  
Chikungunya Virus ◽  
Novel Mutation ◽  
Indian Subcontinent ◽  
Virus Transmission ◽  
Amino Acid Position ◽  
East Central ◽  
Sequencing Studies ◽  
Central South

Abstract After the 2005-2009 chikungunya epidemic, intermittent outbreaks were reported in many parts of India. The outbreaks were caused by either locally circulating strains or imported viruses. Virus transmission route can be traced by complete genome sequencing studies. We investigated two outbreaks in the year 2014 and 2019 in Kerala, India. The chikungunya virus (CHIKV) was isolated from the samples and whole genome was sequenced for a 2014 isolate and a 2019 isolate. The phylogenetic tree revealed that the isolates formed a separate group with 2019 isolate from Pune, Maharashtra and belonged to the East/ Central/ South African (ECSA) genotype, Indian subcontinent sub lineage of Indian Ocean Lineage (IOL). A novel mutation at amino acid position 76 of E2 gene was observed in the group. The phylogenetic results suggest that the outbreaks might have caused by a virus, which has been circulating in India since 2014. Furthermore a detailed study is necessary to find out the evolution of CHIKV in India.

scholarly journals Northward movement of East Central South African genotype of Chikungunya virus causing an epidemic between 2006-2010 in India

2012 ◽  
Vol 6 (07) ◽  
pp. 563-571 ◽  
Author(s):  
Priyanka Singh ◽  
Veena Mittal ◽  
Moshahid A Rizvi ◽  
Dipesh Bhattacharya ◽  
Mala Chhabra ◽  
...  
Keyword(s):  
South African ◽  
Chikungunya Virus ◽  
South India ◽  
Indian Subcontinent ◽  
Virus Transmission ◽  
Central India ◽  
Nucleotide Sequencing ◽  
East Central ◽  
Northern India ◽  
Central South

Introduction: Re-emergence of chikungunya virus in South India after a gap of 32 years in 2006 affected over a million people in the Indian subcontinent. We kept a close vigil over the emerging trend of this virus between 2006-2010 with a view to establish the identity of the circulating genotype(s) and to determine the route of virus transmission in different parts of India. Methodology: Nucleotide sequencing of the E1 gene region from 36 strains of chikungunya virus from three states in northern India was performed for this present study. Forty-four previously reported E1 sequences, retrieved from the global genome data base were used for making a phylogenetic tree. Results: BLAST search revealed 99% homology of the northern Indian strains of the 2006-2010 outbreak with the Reunion Island isolates of 2006. Northern Indian strains of this study clustered with the East Central South African (ECSA) genotype. Conclusions: Findings indicate that the currently circulating strain of chikungunya virus in northern India had its origin from the 2006 epidemic strain of South India that moved toward northern India via the western central India between 2006-2010 in a phased manner with dominance of the ECSA genotype and not the Asian genotype.

scholarly journals Complete Coding Sequence of a Case of Chikungunya Virus Imported into Australia

2017 ◽  
Vol 5 (19) ◽  
Author(s):  
Bixing Huang ◽  
Alyssa T. Pyke ◽  
Jamie McMahon ◽  
David Warrilow
Keyword(s):  
Phylogenetic Analysis ◽  
Virus Infection ◽  
Real Time ◽  
South African ◽  
Genome Sequencing ◽  
Reverse Transcription ◽  
Chikungunya Virus ◽  
East Central ◽  
Reverse Transcription Pcr ◽  
Central South

ABSTRACT A case of chikungunya virus infection was imported from India into Australia in late 2016. Infection was diagnosed by real-time reverse transcription-PCR and confirmed by culture isolation and genome sequencing. Phylogenetic analysis of the genome sequence indicated that the virus grouped with the east/central/south African genotype.

scholarly journals Detection of East/Central/South African genotype Chikungunya virus during an outbreak in a southeastern state of Brazil

2018 ◽  
Vol 146 (16) ◽  
pp. 2056-2058 ◽  
Author(s):  
C. Lessa-Aquino ◽  
K. S. Trinta ◽  
C. P. Pestana ◽  
M. O. Ribeiro ◽  
M. V. F. Sucupira ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
South African ◽  
Acute Phase ◽  
Chikungunya Virus ◽  
Febrile Illness ◽  
Partial Sequence ◽  
East Central ◽  
Qrt Pcr ◽  
Central South ◽  
Sera Samples

AbstractChikungunya virus (CHIKV) is an arbovirus transmitted by Aedes mosquitoes that was first identified in Brazil in 2014. It causes a febrile illness characterised by severe arthralgia and rash. Our group investigated a suspected CHIKV outbreak in Governador Valadares, state of Minas Gerais, Brazil and from 25 acute-phase patients, 10 had qRT-PCR positive sera samples and had E1 partial sequence amplified and Sanger sequenced. Samples were identified as East/Central/South African (ECSA) genotype by phylogenetic analysis and clustered with CHIKV sequences isolated in the neighbour state of Bahia. Our findings confirm previous predictions that ECSA genotype would spread through northeast and southeast of Brazil.

Chikungunya outbreak in Karachi Pakistan 2016-2017: an analysis of viral isolates

2020 ◽  
pp. 1-11
Author(s):  
Dhani Prakoso ◽  
Kelli Barr ◽  
Kehkashan Imtiaz ◽  
Joveria Farooqi ◽  
Erum Khan ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
South African ◽  
Chikungunya Virus ◽  
Amino Acid Change ◽  
Nucleotide Substitution ◽  
Febrile Illness ◽  
East Central ◽  
E1 Protein ◽  
Central South ◽  
Viral Isolates

Abstract In December 2016 physicians in Karachi, Pakistan,witnessed an increase in patients presenting with febrile illness and severe polyarthralgia. Subsequently, chikungunya virus(CHIKV) was isolated from three patients. This virus was sequenced and compared with other isolates of CHIKVobtained in India and Pakistan during recent outbreaks. Phylogenetic analysis indicated that the Karachi isolates were most similar to the East Central South African CHIKV lineage and showed sequence homology to isolates obtained in other parts of Pakistan and India. More importantly, two of the CHIKV isolates had a nucleotide substitution in the E1 gene corresponding to an amino acid change at chain F portion of the E1 protein. Continuous...

scholarly journals Full-Length Genome Sequence of a Chikungunya Virus Isolate from the 2017 Autochthonous Outbreak, Lazio Region, Italy

2017 ◽  
Vol 5 (49) ◽  
Author(s):  
Fabrizio Carletti ◽  
Patrizia Marsella ◽  
Francesca Colavita ◽  
Silvia Meschi ◽  
Eleonora Lalle ◽  
...  
Keyword(s):  
South African ◽  
Genome Sequence ◽  
Chikungunya Virus ◽  
Virus Isolate ◽  
Central Italy ◽  
Mosquito Vector ◽  
Lazio Region ◽  
Content Type ◽  
Full Length Genome ◽  
Central South

ABSTRACT We report here the genome sequence of a human chikungunya virus isolate from the ongoing autochthonous outbreak in central Italy. The sequence (East-Central-South African lineage, Indian Ocean sublineage), which is similar to recent sequences from Pakistan and India, shows E1 and E2 signatures of strains whose main mosquito vector is Aedes aegypti, although Aedes albopictus is the vector in Italy.

scholarly journals Spread, circulation and predominance of chikungunya virus East/Central/South African genotype in Northeast and Southeast Brazil

2018 ◽  
Author(s):  
André R R Freitas ◽  
Robert Paulino-Ramírez ◽  
Rodrigo N Angerami ◽  
Pedro Mª Alarcón-Elbal
Keyword(s):  
South African ◽  
Chikungunya Virus ◽  
Vector Competence ◽  
Temperate Climate ◽  
Southeastern Brazil ◽  
East Central ◽  
Diapausing Eggs ◽  
Cold Tolerant ◽  
Asian Lineage ◽  
Central South

Two recent researches described the spread of East/Central/South African (ECSA) lineage of chikungunya virus (CHIKV) in the Northeastern and Southeastern Brazil (Charlys da Costa et al. 2017, Cunha et al. 2017) . Initial studies in Northern Brazil, as observed in Caribbean, identified the Asian as the circulating lineage of the chikungunya. However, da Charlys da Costa et al. and Cunha et al. reported the exclusive occurrence of ECSA in two different Brazilian regions: Northeast as well as in Rio de Janeiro State (Charlys da Costa et al. 2017, Cunha et al. 2017) , suggesting that the ECSA is the predominant lineage in highly populated Brazilian areas. Despite the well-described vector competence of Aedes mosquitoes for CHIKV transmission, Aedes(Stegomyia)albopictus seems to have a greater competence for transmission of ECSA lineage compared to the Asian lineage (Vega-Rúa et al. 2015) , particularly when variable temperatures mimicking daily fluctuations of temperate climate (Vega-Rúa et al. 2015) . This statement is consistent with the fact that A albopictus has not been denounced as a vector of large outbreaks of chikungunya caused by the Asian genotype. This invasive species have capability of cold-tolerant diapausing eggs, it is paramount to establishment in temperate areas (Mitchell 1995) and new regions are invaded each year (Kraemer et al. 2015) . The predominance of the ECSA lineage in Brazil represents a potential risk of CHIKV dispersion to areas where Ae. albopictus has a broader distribution, particularly in temperate climates, including United States and Europe (Kraemer et al. 2015) , territories with intense commercial and touristic relationship with Brazil. Furthermore, the predominance of ECSA in Brazil can contributes to a better comprehension of the current distinct epidemiological scenarios between Caribbean - where explosive epidemics occurred with Aedes(Stegomyia) aegypti and Asian lineage predominated - and Brazil - with an apparent slower dispersion of CHIKV, where Ae.aegypti predominate but ECSA was prevalent linage. Both studies highlighted the importance of virological surveillance for analysis of current epidemiological scenarios and prediction of potential patterns of spreading of arboviral diseases, locally and worldwide.

scholarly journals Molecular Epidemiology, Evolution and Reemergence of Chikungunya Virus in South Asia

2021 ◽  
Vol 12 ◽  
Author(s):  
Nadim Sharif ◽  
Mithun Kumar Sarkar ◽  
Rabeya Nahar Ferdous ◽  
Shamsun Nahar Ahmed ◽  
Md. Baki Billah ◽  
...  
Keyword(s):  
South Asia ◽  
South African ◽  
Chikungunya Virus ◽  
Clinical Symptoms ◽  
Febrile Illness ◽  
Control Measures ◽  
Effective Control ◽  
East Central ◽  
Vector Mosquito ◽  
Central South

Chikungunya virus (CHIKV) is a vector (mosquito)-transmitted alphavirus (family Togaviridae). CHIKV can cause fever and febrile illness associated with severe arthralgia and rash. Genotypic and phylogenetic analysis are important to understand the spread of CHIKV during epidemics and the diversity of circulating strains for the prediction of effective control measures. Molecular epidemiologic analysis of CHIKV is necessary to understand the complex interaction of vectors, hosts and environment that influences the genotypic evolution of epidemic strains. In this study, different works published during 1950s to 2020 concerning CHIKV evolution, epidemiology, vectors, phylogeny, and clinical outcomes were analyzed. Outbreaks of CHIKV have been reported from Bangladesh, Bhutan, India, Pakistan, Sri Lanka, Nepal, and Maldives in South Asia during 2007–2020. Three lineages- Asian, East/Central/South African (ECSA), and Indian Ocean Lineage (IOL) are circulating in South Asia. Lineage, ECSA and IOL became predominant over Asian lineage in South Asian countries during 2011–2020 epidemics. Further, the mutant E1-A226V is circulating in abundance with Aedes albopictus in India, Bangladesh, Nepal, and Bhutan. CHIKV is underestimated as clinical symptoms of CHIKV infection merges with the symptoms of dengue fever in South Asia. Failure to inhibit vector mediated transmission and predict epidemics of CHIKV increase the risk of larger global epidemics in future. To understand geographical spread of CHIKV, most of the studies focused on CHIKV outbreak, biology, pathogenesis, infection, transmission, and treatment. This updated study will reveal the collective epidemiology, evolution and phylogenies of CHIKV, supporting the necessity to investigate the circulating strains and vectors in South Asia.

scholarly journals Spread, circulation and predominance of chikungunya virus East/Central/South African genotype in Northeast and Southeast Brazil

2018 ◽  
Author(s):  
André R R Freitas ◽  
Robert Paulino-Ramírez ◽  
Rodrigo N Angerami ◽  
Pedro Mª Alarcón-Elbal
Keyword(s):  
South African ◽  
Chikungunya Virus ◽  
Vector Competence ◽  
Temperate Climate ◽  
Southeastern Brazil ◽  
East Central ◽  
Diapausing Eggs ◽  
Cold Tolerant ◽  
Asian Lineage ◽  
Central South

Two recent researches described the spread of East/Central/South African (ECSA) lineage of chikungunya virus (CHIKV) in the Northeastern and Southeastern Brazil (Charlys da Costa et al. 2017, Cunha et al. 2017) . Initial studies in Northern Brazil, as observed in Caribbean, identified the Asian as the circulating lineage of the chikungunya. However, da Charlys da Costa et al. and Cunha et al. reported the exclusive occurrence of ECSA in two different Brazilian regions: Northeast as well as in Rio de Janeiro State (Charlys da Costa et al. 2017, Cunha et al. 2017) , suggesting that the ECSA is the predominant lineage in highly populated Brazilian areas. Despite the well-described vector competence of Aedes mosquitoes for CHIKV transmission, Aedes(Stegomyia)albopictus seems to have a greater competence for transmission of ECSA lineage compared to the Asian lineage (Vega-Rúa et al. 2015) , particularly when variable temperatures mimicking daily fluctuations of temperate climate (Vega-Rúa et al. 2015) . This statement is consistent with the fact that A albopictus has not been denounced as a vector of large outbreaks of chikungunya caused by the Asian genotype. This invasive species have capability of cold-tolerant diapausing eggs, it is paramount to establishment in temperate areas (Mitchell 1995) and new regions are invaded each year (Kraemer et al. 2015) . The predominance of the ECSA lineage in Brazil represents a potential risk of CHIKV dispersion to areas where Ae. albopictus has a broader distribution, particularly in temperate climates, including United States and Europe (Kraemer et al. 2015) , territories with intense commercial and touristic relationship with Brazil. Furthermore, the predominance of ECSA in Brazil can contributes to a better comprehension of the current distinct epidemiological scenarios between Caribbean - where explosive epidemics occurred with Aedes(Stegomyia) aegypti and Asian lineage predominated - and Brazil - with an apparent slower dispersion of CHIKV, where Ae.aegypti predominate but ECSA was prevalent linage. Both studies highlighted the importance of virological surveillance for analysis of current epidemiological scenarios and prediction of potential patterns of spreading of arboviral diseases, locally and worldwide.

scholarly journals First report of the East-Central South African Genotype of Chikungunya Virus in Rio de Janeiro, Brazil

2016 ◽  
Author(s):  
Thiara Manuele Alves de Souza ◽  
Elzinandes Leal de Azeredo ◽  
Jéssica Badolato Corrêa da Silva ◽  
Paulo Vieira Damasco ◽  
Carla Cunha Santos ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
South African ◽  
Molecular Characterization ◽  
Rio De Janeiro ◽  
Chikungunya Virus ◽  
Febrile Illness ◽  
East Central ◽  
The North ◽  
Igm Elisa ◽  
Central South

AbstractBackgroundChikungunya virus (CHIKV) is an arbovirus that causes an acute febrile illness characterized by severe and debilitating arthralgia. In Brazil, the Asian and East-Central South African (ECSA) genotypes are circulating in the north and northeast of the country, respectively. In 2015, the first autochthonous cases in Rio de Janeiro, Brazil were reported but until now the circulating strains have not been characterized. Therefore, we aimed here to perform the molecular characterization and phylogenetic analysis of CHIKV strains circulating in the 2016 outbreak occurred in the municipality of Rio de Janeiro.MethodsThe cases analyzed in this study were collected at a private Hospital, from April 2016 to May 2016, during the chikungunya outbreak in Rio de Janeiro, Brazil. All cases were submitted to the Real Time RT-PCR for CHIKV genome detection and to anti-CHIKV IgM ELISA. Chikungunya infection was laboratorially confirmed by at least one diagnostic method and, randomly selected positive cases (n=10), were partially sequenced (CHIKV E1 gene) and analyzed.ResultsThe results showed that all the samples grouped in ECSA genotype branch and the molecular characterization of the fragment did not reveal the A226V mutation in the Rio de Janeiro strains analyzed, but a K211T amino acid substitution was observed for the first time in all samples and a V156A substitution in two of ten samples.ConclusionsPhylogenetic analysis and molecular characterization reveals the circulation of the ECSA genotype of CHIKV in the city of Rio de Janeiro, Brazil and two amino acids substitutions (K211T and V156A) exclusive to the CHIKV strains obtained during the 2016 epidemic, were reported.

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