scholarly journals Expanding the Reaction Space of Linkage-Specific Sialic Acid Derivatization

Molecules ◽  
2019 ◽  
Vol 24 (19) ◽  
pp. 3617 ◽  
Author(s):  
Tamas Pongracz ◽  
Manfred Wuhrer ◽  
Noortje de Haan
Keyword(s):  
Sialic Acid ◽  
Sialic Acids ◽  
Systematic Evaluation ◽  
Complex Type ◽  
Established Method ◽  
Reaction Space ◽  
Byproduct Formation ◽  
High Degree

The human glycome is characterized by a high degree of sialylation, affecting, amongst others, cell–cell interactions and protein half-life. An established method for the linkage isomer-specific characterization of N-glycan sialylation is based on the linkage-specific derivatization of sialylated glycoconjugates, inducing ethyl esterification of α2,6-linked sialic acids and lactonization of α2,3-linked sialic acids. While the carboxylic acid activator and nucleophile used in this reaction received extensive investigation, the role of the catalyst was never thoroughly explored. A frequently used catalyst for the linkage-specific esterification of sialic acids is 1-hydroxybenzotriazole (HOBt). Here, a systematic evaluation was performed of five HOBt alternatives in combination with 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide (EDC) in ethanol for the linkage-specific derivatization of sialic acids. Derivatized glycans were analyzed by MALDI-TOF-MS and the catalyst performance was evaluated based on the completeness of the reactions and the linkage-specificity obtained. The use of both 6-Cl-HOBt and 6-CF3-HOBt resulted in high linkage-specificity and minimal byproduct formation, similar to the benchmark method using HOBt. Performing the reaction with these catalysts at neutral or acidic pH showed comparable efficiencies on both sialyllactose and complex-type N-glycans. The reported investigations resulted in an expansion of the reaction space for linkage-specific sialic acid derivatization.

scholarly journals Structural characterization of gephyrin by AFM and SAXS reveals a mixture of compact and extended states

2013 ◽  
Vol 69 (10) ◽  
pp. 2050-2060 ◽  
Author(s):  
Bodo Sander ◽  
Giancarlo Tria ◽  
Alexander V. Shkumatov ◽  
Eun-Young Kim ◽  
J. Günter Grossmann ◽  
...  
Keyword(s):  
Conformational Dynamics ◽  
Cd Spectroscopy ◽  
X Ray ◽  
Force Microscopy ◽  
X Ray Scattering ◽  
Atomic Force ◽  
Extended States ◽  
High Degree

Gephyrin is a trimeric protein involved in the final steps of molybdenum-cofactor (Moco) biosynthesis and in the clustering of inhibitory glycine and GABAAreceptors at postsynaptic specializations. Each protomer consists of stably folded domains (referred to as the G and E domains) located at either terminus and connected by a proteolytically sensitive linker of ∼150 residues. Both terminal domains can oligomerize in their isolated forms; however, in the context of the full-length protein only the G-domain trimer is permanently present, whereas E-domain dimerization is prevented. Atomic force microscopy (AFM) and small-angle X-ray scattering (SAXS) reveal a high degree of flexibility in the structure of gephyrin. The results imply an equilibrium between compact and extended conformational states in solution, with a preference for compact states. CD spectroscopy suggests that a partial compaction is achieved by interactions of the linker with the G and E domains. Taken together, the data provide a rationale for the role of the linker in the overall structure and the conformational dynamics of gephyrin.

Relationship between serum sialic acids, sialic acid-rich inflammation-sensitive proteins and cell damage in patients with acute myocardial infarction

2006 ◽  
Vol 44 (2) ◽  
Author(s):  
Selma Süer Gökmen ◽  
Cemal Kazezoğlu ◽  
Bendigar Sunar ◽  
Fatih Özçelik ◽  
Özgül Güngör ◽  
...  
Keyword(s):  
Myocardial Infarction ◽  
Acute Myocardial Infarction ◽  
Sialic Acid ◽  
Cell Membrane ◽  
Cell Damage ◽  
Membrane Surface ◽  
Elevated Serum ◽  
Sialic Acids ◽  
Cell Membrane Surface

AbstractThe role of sialic acid (SA) in the pathogenesis of atherosclerosis and as a predictor of cardiovascular events has attracted much attention in recent years. However, most studies investigating the role of total and lipid-bound sialic acids (TSA and LSA) in the pathogenesis of atherosclerosis lack information on the reason for the elevated SA concentrations in coronary heart disease and myocardial infarction. Since the inflammation-sensitive proteins are glycoproteins with SA residues, an increase in their levels due to some type of acute-phase reaction or inflammation could be responsible for the elevated TSA levels in acute myocardial infarction (AMI). Elevated serum SA levels might also be due to either shedding or secretion of free SA from the cell or cell membrane surface if neuraminidase levels are increased, or to the release of cellular SA-containing glycolipids and/or glycoproteins into plasma from myocardial cells after AMI. The aim of the present study was to investigate both the possible role of SA-rich inflammation-sensitive proteins and the cell damage due to elevated serum TSA levels in AMI. A possible role of serum LSA as an indicator of the shedding or secretion of SA from the cell or cell membrane surface in AMI was also evaluated. The study included 38 subjects with AMI and 32 healthy volunteers. Serum TSA and LSA were determined using the methods of Warren and Katopodis, respectively. The concentrations of serum SA-rich inflammation-sensitive proteins, namely α

scholarly journals The Role of Sialic Acids in the Establishment of Infections by Pathogens, With Special Focus on Leishmania

2021 ◽  
Vol 11 ◽  
Author(s):  
Tainá Cavalcante ◽  
Mariana Medina Medeiros ◽  
Simon Ngao Mule ◽  
Giuseppe Palmisano ◽  
Beatriz Simonsen Stolf
Keyword(s):  
Sialic Acid ◽  
Cell Surface ◽  
Host Cell ◽  
Functional Diversity ◽  
Sialic Acids ◽  
Cellular Communication ◽  
Special Focus ◽  
Functional Studies ◽  
Sialic Acid Binding

Carbohydrates or glycans are ubiquitous components of the cell surface which play crucial biological and structural roles. Sialic acids (Sias) are nine-carbon atoms sugars usually present as terminal residues of glycoproteins and glycolipids on the cell surface or secreted. They have important roles in cellular communication and also in infection and survival of pathogens. More than 20 pathogens can synthesize or capture Sias from their hosts and incorporate them into their own glycoconjugates and derivatives. Sialylation of pathogens’ glycoconjugates may be crucial for survival inside the host for numerous reasons. The role of Sias in protozoa such as Trypanosoma and Leishmania was demonstrated in previous studies. This review highlights the importance of Sias in several pathogenic infections, focusing on Leishmania. We describe in detail the contributions of Sias, Siglecs (sialic acid binding Ig-like lectins) and Neuraminidase 1 (NEU 1) in the course of Leishmania infection. A detailed view on the structural and functional diversity of Leishmania-related Sias and host-cell receptors will be provided, as well as the results of functional studies performed with different Leishmania species.

scholarly journals Structural Characterization of an S-enantioselective Imine Reductase from Mycobacterium Smegmatis

Biomolecules ◽  
2020 ◽  
Vol 10 (8) ◽  
pp. 1130
Author(s):  
Timo Meyer ◽  
Nadine Zumbrägel ◽  
Christina Geerds ◽  
Harald Gröger ◽  
Hartmut H. Niemann
Keyword(s):  
Substrate Specificity ◽  
Active Site ◽  
Mycobacterium Smegmatis ◽  
Catalytic Mechanism ◽  
Building Blocks ◽  
Secondary Amines ◽  
Hydrophobic Amino Acids ◽  
High Degree

NADPH-dependent imine reductases (IREDs) are enzymes capable of enantioselectively reducing imines to chiral secondary amines, which represent important building blocks in the chemical and pharmaceutical industry. Since their discovery in 2011, many previously unknown IREDs have been identified, biochemically and structurally characterized and categorized into families. However, the catalytic mechanism and guiding principles for substrate specificity and stereoselectivity remain disputed. Herein, we describe the crystal structure of S-IRED-Ms from Mycobacterium smegmatis together with its cofactor NADPH. S-IRED-Ms belongs to the S-enantioselective superfamily 3 (SFam3) and is the first IRED from SFam3 to be structurally described. The data presented provide further evidence for the overall high degree of structural conservation between different IREDs of various superfamilies. We discuss the role of Asp170 in catalysis and the importance of hydrophobic amino acids in the active site for stereospecificity. Moreover, a separate entrance to the active site, potentially functioning according to a gatekeeping mechanism regulating access and, therefore, substrate specificity is described.

scholarly journals Sialic acid acquisition in bacteria–one substrate, many transporters

2016 ◽  
Vol 44 (3) ◽  
pp. 760-765 ◽  
Author(s):  
Gavin H. Thomas
Keyword(s):  
Sialic Acid ◽  
Immune Evasion ◽  
Sialic Acids ◽  
Major Facilitator Superfamily ◽  
Acid Uptake ◽  
Gram Negative Bacteria ◽  
Acetylneuraminic Acid ◽  
Wide Range ◽  
Major Facilitator

The sialic acids are a family of 9-carbon sugar acids found predominantly on the cell-surface glycans of humans and other animals within the Deuterostomes and are also used in the biology of a wide range of bacteria that often live in association with these animals. For many bacteria sialic acids are simply a convenient source of food, whereas for some pathogens they are also used in immune evasion strategies. Many bacteria that use sialic acids derive them from the environment and so are dependent on sialic acid uptake. In this mini-review I will describe the discovery and characterization of bacterial sialic acids transporters, revealing that they have evolved multiple times across multiple diverse families of transporters, including the ATP-binding cassette (ABC), tripartite ATP-independent periplasmic (TRAP), major facilitator superfamily (MFS) and sodium solute symporter (SSS) transporter families. In addition there is evidence for protein-mediated transport of sialic acids across the outer membrane of Gram negative bacteria, which can be coupled to periplasmic processing of different sialic acids to the most common form, β-D-N-acetylneuraminic acid (Neu5Ac) that is most frequently taken up into the cell.

Linkage-selective derivatization for glycosylation site- and glycoform-specific characterization of sialic acid isomers by mass spectrometry

2021 ◽  
Author(s):  
Ye Peng ◽  
Bing Gu ◽  
Zhenyu Sun ◽  
Yueyue Li ◽  
Ying Zhang ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Sialic Acid ◽  
Sialic Acids ◽  
Glycosylation Site ◽  
Relative Quantification ◽  
Specific Manner ◽  
A Site

Here, we developed a linkage-selective derivatization approach for differentiation and relative quantification of α-2,3- and α-2,6-linked sialic acids in a site- and glycoform-specific manner. Linkage-selective derivatization with isotope molecules discriminates...

9-O-acetylated sialic acids enhance entry of virulentLeishmania donovanipromastigotes into macrophages

Parasitology ◽  
2008 ◽  
Vol 136 (2) ◽  
pp. 159-173 ◽  
Author(s):  
A. GHOSHAL ◽  
S. MUKHOPADHYAY ◽  
A. K. CHAVA ◽  
G. J. GERWIG ◽  
J. P. KAMERLING ◽  
...  
Keyword(s):  
Flow Cytometry ◽  
Sialic Acid ◽  
Leishmania Donovani ◽  
Sialic Acids ◽  
Phagocytic Index ◽  
Scatchard Analysis ◽  
Fluorimetric Determination ◽  
Differential Distribution ◽  
Metacyclic Promastigotes

SUMMARYDistribution of 9-O-acetylated sialic acids (9-O-AcSA) onLeishmania donovanihas been previously reported. Considering their role in recognition, the differential distribution of sialic acids especially 9-O-acetylated sialic acids in avirulent (UR6) versus virulent (AG83 and GE1) promastigotes ofLeishmania donovaniand its role in entry into macrophages was explored. Fluorimetric-HPLC, fluorimetric determination and ELISA revealed 14-, 8- and 5-fold lower sialic acids in UR6 as compared to AG83. Interestingly, on UR6, flow cytometry indicated lower (α2→6)-linked sialoglycoproteins along with minimal 9-O-acetylated sialoglycoproteins by Scatchard analysis. Further, UR6 demonstrated a 9- and 14·5-fold lower infectivity and phagocytic index than AG83. Additionally, de-O-acetylation and de-sialylation of AG83 demonstrated a 3- and 1·5-fold reduced phagocytic index. The role of 9-O-AcSA in entry was further confirmed by pre-blocking the macrophage surface with a cocktail of sugars followed by microscopic quantification. The phagocytic index of AG83 exclusively through 9-O-AcSA was significantly high. Interestingly, AG83 produced higher metacyclic promastigotes containing increased 9-O-AcSA as compared to avirulent UR6 supporting its virulent nature. Taken together; our results conclusively demonstrate the increased presence of 9-O-acetylated sialic acid on promastigotes of virulentLeishmania donovanias compared to avirulent UR6 and their subsequent role in entry within macrophages.

Desialylation of N-Linked Carbohydrate Chain of Fibrinogen

2013 ◽  
Vol 534 ◽  
pp. 241-246
Author(s):  
Kenji Kubota ◽  
Yoshiharu Toyama ◽  
Nobukazu Nameki ◽  
Kaori Wakamatsu
Keyword(s):  
Sialic Acid ◽  
Carbohydrate Chain ◽  
Sialic Acids ◽  
Polymerization Process ◽  
Fibrin Polymerization ◽  
Terminal Sialic Acid ◽  
Mixing Effects ◽  
Polymerization Behavior ◽  
Carbohydrate Chains

Acceleration of fibrin polymerization occurs by the cleavage of sialic acids at the nonreducing terminal ends of N-linked carbohydrate chains as well as the cleavage of the entity of carbohydrate chains. In order to characterize and clarify the role of terminal sialic acid in the fibrin polymerization, mixing effects of desialylated fibrinogen with the intact one on the polymerization behavior were investigated by turbidity measurements in the course of polymerization. Marked accelerated fibrin polymerization was observed for the mixing of even a little amount of desialylated fibrinogen. Cleavage of the terminal sialic acid resulted in almost the equivalent accelerating effect to those of the deglycosylated fibrinogen, in which the entity of N-linked carbohydrate chain was cleaved. These results suggest that the terminal sialic acids regulate the fibrin polymerization in an inhibitory manner, and the cleavage of them induces the switchover from the protofibril growth to the lateral aggregation of fibrin polymerization process, resulting in the preferential fibrin polymerization.

scholarly journals Virulence Traits of a Serogroup C Meningococcus and IsogeniccssAMutant, Defective in Surface-Exposed Sialic Acid, in a Murine Model of Meningitis

2019 ◽  
Vol 87 (4) ◽  
Author(s):  
Roberta Colicchio ◽  
Chiara Pagliuca ◽  
Susanna Ricci ◽  
Elena Scaglione ◽  
Denis Grandgirard ◽  
...  
Keyword(s):  
Sialic Acid ◽  
Corpus Callosum ◽  
Type Strain ◽  
Wild Type Strain ◽  
Lethal Dose ◽  
Sialic Acids ◽  
Wild Type ◽  
Knockout Mutant ◽  
Content Type

ABSTRACTIn serogroup CNeisseria meningitidis, thecssA(siaA) gene codes for an UDP-N-acetylglucosamine 2-epimerase that catalyzes the conversion of UDP-N-acetyl-α-d-glucosamine intoN-acetyl-d-mannosamine and UDP in the first step in sialic acid biosynthesis. This enzyme is required for the biosynthesis of the (α2→9)-linked polysialic acid capsule and for lipooligosaccharide (LOS) sialylation. In this study, we have used a reference serogroup C meningococcal strain and an isogeniccssAknockout mutant to investigate the pathogenetic role of surface-exposed sialic acids in a model of meningitis based on intracisternal inoculation of BALB/c mice. Results confirmed the key role of surface-exposed sialic acids in meningococcal pathogenesis. The 50% lethal dose (LD50) of the wild-type strain 93/4286 was about four orders of magnitude lower than that of thecssAmutant. Compared to the wild-type strain, the ability of this mutant to replicate in brain and spread systemically was severely impaired. Evaluation of brain damage evidenced a significant reduction in cerebral hemorrhages in mice infected with the mutant in comparison with the levels in those challenged with the wild-type strain. Histological analysis showed the typical features of bacterial meningitis, including inflammatory cells in the subarachnoid, perivascular, and ventricular spaces especially in animals infected with the wild type. Noticeably, 80% of mice infected with the wild-type strain presented with massive bacterial localization and accompanying inflammatory infiltrate in thecorpus callosum, indicating high tropism of meningococci exposing sialic acids toward this brain structure and a specific involvement of thecorpus callosumin the mouse model of meningococcal meningitis.

scholarly journals Radioimmunochemical evidence for a role of carbohydrate in antigenic determinant(s) on human liver α-L-fucosidase

1984 ◽  
Vol 223 (2) ◽  
pp. 293-298 ◽  
Author(s):  
J A Alhadeff ◽  
G L Andrews-Smith
Keyword(s):  
Sialic Acid ◽  
Antigenic Determinant ◽  
Human Liver ◽  
Competitive Ability ◽  
Sialic Acids ◽  
Acetylneuraminic Acid ◽  
Colominic Acid ◽  
Sugar Derivatives ◽  
Radioimmunoassay Method

A competitive-binding radioimmunoassay method was employed to investigate the role of carbohydrate in antigenic determinant(s) of human liver alpha-L-fucosidase. Competition curves were used to quantify the concentrations of competitors needed to cause 30% inhibition of the precipitation of 125I-labelled alpha-L-fucosidase. The isoelectric forms of alpha-L-fucosidase, which are related by sialic acid residues, were separated preparatively and used as competitors in the radioimmunoassay. A pattern of increasing effectiveness as competitors with increasing acidity of the forms was found, suggesting that sialic acid may be involved in the antigenic determinant(s) of alpha-L-fucosidase. Specificity was exhibited when sugar and sugar derivatives were used as competitors in the radioimmunoassay: a 51-fold range of competitive ability was found, and sialic acids (N-acetylneuraminic acid and N-glycollylneuraminic acid) and colominic acid (a polymer of N-acetylneuraminic acid) were the best competitors. The results of our studies suggest that carbohydrate contributes to antigenic determinant(s) of alpha-L-fucosidase and that sialic acid is probably the major sugar involved.

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