scholarly journals The Chloroplast Genome of Lilium henrici: Genome Structure and Comparative Analysis

Molecules ◽  
2018 ◽  
Vol 23 (6) ◽  
pp. 1276 ◽  
Author(s):  
Hai-Ying Liu ◽  
Yan Yu ◽  
Yi-Qi Deng ◽  
Juan Li ◽  
Zi-Xuan Huang ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Chloroplast Genome ◽  
Genome Structure

scholarly journals Complete Chloroplast Genome Sequence of Broomcorn Millet (Panicum miliaceum L.) and Comparative Analysis with Other Panicoideae Species

Agronomy ◽  
2018 ◽  
Vol 8 (9) ◽  
pp. 159 ◽  
Author(s):  
Xiaojun Nie ◽  
Xian Zhao ◽  
Sue Wang ◽  
Ting Zhang ◽  
Chong Li ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Chloroplast Genome ◽  
Panicum Virgatum ◽  
Genome Structure ◽  
Structural Features ◽  
Panicum Miliaceum ◽  
Genomic Knowledge ◽  
Broomcorn Millet ◽  
Evolutionary Studies ◽  
Cp Genome

Broomcorn millet (Panicum miliaceum L.) is one of the earliest domesticated cereals worldwide, holding significant agricultural, historical, and evolutionary importance. However, our genomic knowledge of it is rather limited at present, hampering further genetic and evolutionary studies. Here, we sequenced and assembled the chloroplast genome (cp) of broomcorn millet and compared it with five other Panicoideae species. Results showed that the cp genome of broomcorn millet was 139,826 bp in size, with a typical quadripartite structure. In total, 108 genes were annotated and 18 genes were duplicated in the IR (inverted region) region, which was similar to other Panicoideae species. Comparative analysis showed a rather conserved genome structure between them, with three common regions. Furthermore, RNA editing, codon usage, and expansion of the IR, as well as simple sequence repeat (SSR) elements, were systematically investigated and 13 potential DNA markers were developed for Panicoideae species identification. Finally, phylogenetic analysis implied that broomcorn millet was a sister species to Panicum virgatum within the tribe Paniceae, and supported a monophyly of the Panicoideae. This study has reported for the first time the genome organization, gene content, and structural features of the chloroplast genome of broomcorn millet, which provides valuable information for genetic and evolutionary studies in the genus Panicum and beyond.

Complete sequence of the chloroplast genome from pear (Pyrus pyrifolia): genome structure and comparative analysis

2012 ◽  
Vol 8 (4) ◽  
pp. 841-854 ◽  
Author(s):  
Shingo Terakami ◽  
Yuichiro Matsumura ◽  
Kanako Kurita ◽  
Hiroyuki Kanamori ◽  
Yuichi Katayose ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Chloroplast Genome ◽  
Genome Structure ◽  
Complete Sequence ◽  
Pyrus Pyrifolia

scholarly journals Chloroplast Genome Sequence of Clusterbean (Cyamopsis tetragonoloba L.): Genome Structure and Comparative Analysis

Genes ◽  
2017 ◽  
Vol 8 (9) ◽  
pp. 212 ◽  
Author(s):  
Tanvi Kaila ◽  
Pavan Chaduvla ◽  
Hukam Rawal ◽  
Swati Saxena ◽  
Anshika Tyagi ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Chloroplast Genome ◽  
Genome Sequence ◽  
Genome Structure ◽  
Cyamopsis Tetragonoloba ◽  
Chloroplast Genome Sequence

scholarly journals The extremely large chloroplast genome of the green alga Haematococcus pluvialis: Genome structure, and comparative analysis

2021 ◽  
Vol 56 ◽  
pp. 102308
Author(s):  
Qingmin Ren ◽  
Yin-chu Wang ◽  
Yanni Lin ◽  
Zhanghe Zhen ◽  
Yulin Cui ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Chloroplast Genome ◽  
Green Alga ◽  
Haematococcus Pluvialis ◽  
Genome Structure

scholarly journals The First Complete Chloroplast Genome Sequences in Actinidiaceae: Genome Structure and Comparative Analysis

PLoS ONE ◽  
2015 ◽  
Vol 10 (6) ◽  
pp. e0129347 ◽  
Author(s):  
Xiaohong Yao ◽  
Ping Tang ◽  
Zuozhou Li ◽  
Dawei Li ◽  
Yifei Liu ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Chloroplast Genome ◽  
Genome Structure ◽  
Genome Sequences ◽  
Complete Chloroplast Genome
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