scholarly journals Comparative Genomics Analysis of Vibrio anguillarum Isolated from Lumpfish (Cyclopterus lumpus) in Newfoundland Reveal Novel Chromosomal Organizations

2020 ◽  
Vol 8 (11) ◽  
pp. 1666
Author(s):  
Ignacio Vasquez ◽  
Trung Cao ◽  
Setu Chakraborty ◽  
Hajarooba Gnanagobal ◽  
Nicole O’Brien ◽  
...  
Keyword(s):  
North Atlantic Ocean ◽  
Vibrio Anguillarum ◽  
Lepeophtheirus Salmonis ◽  
Cyclopterus Lumpus ◽  
The North ◽  
The Pacific ◽  
Wide Range ◽  
Extrachromosomal Element ◽  
Sequence Elements ◽  
The Pacific Ocean

Vibrio anguillarum is a Gram-negative marine pathogen causative agent of vibriosis in a wide range of hosts, including invertebrates and teleosts. Lumpfish (Cyclopterus lumpus), a native fish of the North Atlantic Ocean, is utilized as cleaner fish to control sea lice (Lepeophtheirus salmonis) infestations in the Atlantic salmon (Salmo salar) aquaculture industry. V. anguillarum is one of the most frequent bacterial pathogens affecting lumpfish. Here, we described the phenotype and genomic characteristics of V. anguillarum strain J360 isolated from infected cultured lumpfish in Newfoundland, Canada. Koch’s postulates determined in naïve lumpfish showed lethal acute vibriosis in lumpfish. The V. anguillarum J360 genome was shown to be composed of two chromosomes and two plasmids with a total genome size of 4.56 Mb with 44.85% G + C content. Phylogenetic and comparative analyses showed that V. anguillarum J360 is closely related to V. anguillarum strain VIB43, isolated in Scotland, with a 99.8% genome identity. Differences in the genomic organization were identified and associated with insertion sequence elements (ISs). Additionally, V. anguillarum J360 does not possess a pJM1-like plasmid, typically present in virulent isolates from the Pacific Ocean, suggesting that acquisition of this extrachromosomal element and the virulence of V. anguillarum J360 or other Atlantic isolates could increase.

scholarly journals Was the North Atlantic Ocean well-ventilated during Oceanic Anoxic Event 2 in the mid-Cretaceous?

2013 ◽  
Vol 10 (8) ◽  
pp. 13231-13276
Author(s):  
I. Ruvalcaba-Baroni ◽  
R. P. M. Topper ◽  
N. A. G. M. van Helmond ◽  
H. Brinkhuis ◽  
C. P. Slomp
Keyword(s):  
Ocean Circulation ◽  
North Atlantic ◽  
Primary Productivity ◽  
North Atlantic Ocean ◽  
Low Oxygen ◽  
Deep Basin ◽  
The North ◽  
The Pacific ◽  
The Pacific Ocean ◽  
The North Atlantic

Abstract. The geological record provides evidence for the periodic occurrence of water column anoxia and formation of organic-rich deposits in the North Atlantic Ocean during the mid-Cretaceous (hereafter called proto-North Atlantic). Both changes in primary productivity and oceanic circulation likely played a role in the development of the low oxygen conditions. Several studies suggest that an increased input of phosphorus from land initiated oceanic anoxic events (OAEs). Other proposed mechanisms invoke a vigorous upwelling system and an ocean circulation pattern that acted as a trap for nutrients from the Pacific Ocean. Here, we use a detailed biogeochemical box model for the proto-North Atlantic to analyse under what conditions anoxia could have developed during OAE2 (94 Ma). The model explicitly describes the coupled water, carbon, oxygen and phosphorus cycles for the deep basin and continental shelves. In our simulations, we assume the vigorous water circulation from a recent regional ocean model study. Our model results for pre-OAE2 and OAE2 conditions are compared to sediment records of organic carbon and proxies for photic zone euxinia and bottom water redox conditions (e.g. isorenieratane, carbon/phosphorus ratios). Our results show that a strongly elevated input of phosphorus from rivers and the Pacific Ocean relative to pre-OAE2 conditions is a requirement for the widespread development of low oxygen in the proto-North Atlantic during OAE2. Moreover, anoxia in the proto-North Atlantic is shown to be greatly influenced by the oxygen concentration of Pacific bottom waters. In our model, primary productivity increased significantly upon the transition from pre-OAE2 to OAE2 conditions. Our model captures the regional trends in anoxia as deduced from observations, with euxinia spreading to the northern and eastern shelves but with the most intense euxinia occurring along the southern coast. However, anoxia in the central deep basin is difficult to achieve in the model. This suggests that the ocean circulation used in the model may be too vigorous and/or that anoxia in the proto-North Atlantic was less widespread than previously thought.

scholarly journals Research Gap Analysis of Remote Sensing Application in Fisheries: Prospects for Achieving the Sustainable Development Goals

2021 ◽  
Vol 13 (5) ◽  
pp. 1013
Author(s):  
Kuo-Wei Yen ◽  
Chia-Hsiang Chen
Keyword(s):  
Sustainable Development ◽  
Indian Ocean ◽  
Atlantic Ocean ◽  
The Sustainable Development ◽  
The North ◽  
The Pacific ◽  
Development Goals ◽  
The Indian Ocean ◽  
The Pacific Ocean ◽  
Research Hotspots

Remote sensing (RS) technology, which can facilitate the sustainable management and development of fisheries, is easily accessible and exhibits high performance. It only requires the collection of sufficient information, establishment of databases and input of human and capital resources for analysis. However, many countries are unable to effectively ensure the sustainable development of marine fisheries due to technological limitations. The main challenge is the gap in the conditions for sustainable development between developed and developing countries. Therefore, this study applied the Web of Science database and geographic information systems to analyze the gaps in fisheries science in various countries over the past 10 years. Most studies have been conducted in the offshore marine areas of the northeastern United States of America. In addition, all research hotspots were located in the Northern Hemisphere, indicating a lack of relevant studies from the Southern Hemisphere. This study also found that research hotspots of satellite RS applications in fisheries were mainly conducted in (1) the northeastern sea area in the United States, (2) the high seas area of the North Atlantic Ocean, (3) the surrounding sea areas of France, Spain and Portugal, (4) the surrounding areas of the Indian Ocean and (5) the East China Sea, Yellow Sea and Bohai Bay sea areas to the north of Taiwan. A comparison of publications examining the three major oceans indicated that the Atlantic Ocean was the most extensively studied in terms of RS applications in fisheries, followed by the Indian Ocean, while the Pacific Ocean was less studied than the aforementioned two regions. In addition, all research hotspots were located in the Northern Hemisphere, indicating a lack of relevant studies from the Southern Hemisphere. The Atlantic Ocean and the Indian Ocean have been the subjects of many local in-depth studies; in the Pacific Ocean, the coastal areas have been abundantly investigated, while offshore local areas have only been sporadically addressed. Collaboration and partnership constitute an efficient approach for transferring skills and technology across countries. For the achievement of the sustainable development goals (SDGs) by 2030, research networks can be expanded to mitigate the research gaps and improve the sustainability of marine fisheries resources.

Little-known arctic species Montacuta spitzbergensis (Bivalvia: Montacutidae) from the north-western Pacific with notes on Montacuta substriata and Tellimya ferruginosa

2008 ◽  
Vol 88 (2) ◽  
pp. 347-356 ◽  
Author(s):  
Gennady M. Kamenev
Keyword(s):  
Sea Of Okhotsk ◽  
First Record ◽  
Western Pacific ◽  
The Arctic ◽  
Arctic Species ◽  
The North ◽  
The Pacific ◽  
The Pacific Ocean ◽  
North Western ◽  
North Western Pacific

An expanded description of a little-known arctic species Montacuta spitzbergensis from the Sea of Okhotsk with new data on its morphology, ecology and geographical distribution is given. This is the first record of M. spitzbergensis from the north-western Pacific. It differs from other species of Montacuta in its large (to 8.4 mm), elongate–ovate, thick shell with wide, slightly curved hinge plate, wide, short, and shallow resilifer, and weakly developed external ligament. This species occurs in the Arctic Ocean (Spitsbergen, Barents, Kara, Laptev and Chukchi Seas) and the Pacific Ocean (Sea of Okhotsk) at depths from 9 to 232 m at a bottom temperature from −1.62°C to +2.50°C. The hinge structure of the type species of the genera Montacuta and Tellimya is also discussed.

scholarly journals Quaternary Marine Mollusk Associations of the Last Interglacials in North Patagonia (Argentina): Paleoecology and Paleoclimates

2021 ◽  
Author(s):  
M.P. Charó
Keyword(s):  
Habitat Heterogeneity ◽  
Buenos Aires ◽  
Global Changes ◽  
Buenos Aires Province ◽  
The North ◽  
Rio Negro ◽  
The Pacific ◽  
The Pacific Ocean ◽  
Crassostrea Rhizophorae ◽  
Mis 5E

Deposits of different Quaternary marine transgressions are largely exposed in the Argentine north Patagonian littoral (39°15′S–41°02′S), south of the Buenos Aires and north of Río Negro provinces. The malacological associations of 84 sites were studied. Among them, 31 belong to Pleistocene deposits of the interglacials ≥ MIS 9, MIS 7, MIS 5e, 29 to Holocene deposits of the interglacial MIS 1, and 24 sites of modern beaches. These sites yielded 7385 fossils among valves and shells, of 78 species (42 bivalves and 36 gastropods), including 11 micromolluskan species. The record of the bivalves Crassostrea rhizophorae in the south of the Buenos Aires Province, and Anomalocardia brasiliana (both currently inhabiting lower latitudes), and very likely the gastropod Tegula atra (inhabiting today the Pacific Ocean) in the north of Río Negro Province, suggests that interglacials MIS 7, MIS 5e and MIS 1 were warmer than today. However, the associations determined for the studied interglacials have not changed in their composition, but in abundance of species, except for the latitudinal shifts of the three mentioned species, and the presence of cold to temperate water taxa since the MIS 1 in the ecotonal area of the north of Río Negro Province. Changes in the associations of northern Patagonia during the Quaternary derived from global changes (sea surface temperature, salinity, etc.), and the existence of habitat heterogeneity in each of the areas, that enabled the co-existence of different bivalve and gastropod species of the local benthic marine malacofauna.

scholarly journals Biogeochemistry of the North Atlantic during oceanic anoxic event 2: role of changes in ocean circulation and phosphorus input

2014 ◽  
Vol 11 (4) ◽  
pp. 977-993 ◽  
Author(s):  
I. Ruvalcaba Baroni ◽  
R. P. M. Topper ◽  
N. A. G. M. van Helmond ◽  
H. Brinkhuis ◽  
C. P. Slomp
Keyword(s):  
Pacific Ocean ◽  
Ocean Circulation ◽  
North Atlantic ◽  
Primary Productivity ◽  
Low Oxygen ◽  
Deep Basin ◽  
The North ◽  
The Pacific ◽  
The Pacific Ocean ◽  
The North Atlantic

Abstract. The geological record provides evidence for the periodic occurrence of water column anoxia and formation of organic-rich deposits in the North Atlantic Ocean during the mid-Cretaceous (hereafter called the proto-North Atlantic). Both changes in primary productivity and oceanic circulation likely played a role in the development of the low-oxygen conditions. Several studies suggest that an increased input of phosphorus from land initiated oceanic anoxic events (OAEs). Other proposed mechanisms invoke a vigorous upwelling system and an ocean circulation pattern that acted as a trap for nutrients from the Pacific Ocean. Here, we use a detailed biogeochemical box model for the proto-North Atlantic to analyse under what conditions anoxia could have developed during OAE2 (94 Ma). The model explicitly describes the coupled water, carbon, oxygen and phosphorus cycles for the deep basin and continental shelves. In our simulations, we assume the vigorous water circulation from a recent regional ocean model study. Our model results for pre-OAE2 and OAE2 conditions are compared to sediment records of organic carbon and proxies for photic zone euxinia and bottom water redox conditions (e.g. isorenieratane, carbon/phosphorus ratios). Our results show that a strongly elevated input of phosphorus from rivers and the Pacific Ocean relative to pre-OAE2 conditions is a requirement for the widespread development of low oxygen in the proto-North Atlantic during OAE2. Moreover, anoxia in the proto-North Atlantic is shown to be greatly influenced by the oxygen concentration of Pacific bottom waters. In our model, primary productivity increased significantly upon the transition from pre-OAE2 to OAE2 conditions. Our model captures the regional trends in anoxia as deduced from observations, with euxinia spreading to the northern and eastern shelves but with the most intense euxinia occurring along the southern coast. However, anoxia in the central deep basin is difficult to achieve in the model. This suggests that the ocean circulation used in the model may be too vigorous and/or that anoxia in the proto-North Atlantic was less widespread than previously thought.

IX. Contributions to terrestrial magnetism.—No. IV

1843 ◽  
Vol 133 ◽  
pp. 113-143 ◽  
Keyword(s):  
Pacific Ocean ◽  
West Coast ◽  
China Seas ◽  
North West ◽  
The North ◽  
The Pacific ◽  
The Pacific Ocean ◽  
The Times ◽  
The China Seas

In the present number of these Contributions, I resume the consideration of Captain Sir Edward Belcher’s magnetic observations, of which the first portion, viz. that of the stations on the north-west coast of America and adjacent islands, was discussed in No. II. The return to England of Her Majesty’s ship Sulphur by the route of the Pacific Ocean, and her detention for some months in the China Seas, have enabled Sir Edward Belcher to add magnetic determinations at thirty-two stations to those at the twenty-nine stations previously recorded. In the notice of the earlier observations, a provisional coefficient was employed in the formula for the temperature corrections of the results with the intensity needles, as no experiments had then been made for the determination of their individual co­efficients. As soon therefore as Sir Edward Belcher had completed the observation of the times of vibration of those needles at Woolwich, as the concluding station of the series made with them, Lieut. Riddell, R. A. undertook the determination of their several coefficients, which was performed in the manner and with the results described in the subjoined memorandum.

scholarly journals Species Composition and New Records of Diatom Taxa on Phyllodictyon pulcherrimum (Chlorophyceae) from the Gulf of California

Diversity ◽  
2020 ◽  
Vol 12 (9) ◽  
pp. 339
Author(s):  
Francisco Omar López-Fuerte ◽  
David Alfaro Siqueiros Beltrones ◽  
María del Carmen Altamirano-Cerecedo
Keyword(s):  
Gulf Of California ◽  
New Records ◽  
American Continent ◽  
Epiphytic Diatoms ◽  
Taxonomic Analysis ◽  
The North ◽  
The Pacific ◽  
The Pacific Ocean ◽  
First Time ◽  
The North Pacific

A taxonomic analysis of diatoms found on Phyllodictyon pulcherrimum yielded a total of 244 diatom taxa (all illustrated) within 27 orders, 45 families, and 86 genera. The Taxa were briefly documented in a list including identification references and morphometric data. Thirty-eight of the taxa identified at the species and infraspecific levels represent new records for the coasts of Mexico. Seven were recorded for the first time on the American continent: Auricula flabelliformis, A. pulchra, Campylodiscus scalaris, Coscinodiscus mesoleius, Dimeregramma fulvum, Navicula palpebralis var. angulosa, and Seminavis barbarae, and one, Nitzschia fusiformis, for the Pacific Ocean. This is the second record of the chlorophyte P. pulcherrimum in the north Pacific and the third for Mexican waters. The results confirm that surveying rare macroalgae species as hosts for epiphytic diatoms provides opportunities to seek new records of diatom taxa, or even new taxa, in regions around the world.

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