scholarly journals Avian Pathogenic Escherichia coli and Clostridium perfringens: Challenges in No Antibiotics Ever Broiler Production and Potential Solutions

2020 ◽  
Vol 8 (10) ◽  
pp. 1533
Author(s):  
Courtney A. Fancher ◽  
Li Zhang ◽  
Aaron S. Kiess ◽  
Pratima A. Adhikari ◽  
Thu T.N. Dinh ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Clostridium Perfringens ◽  
Pathogenic Bacteria ◽  
Management Strategies ◽  
Necrotic Enteritis ◽  
Broiler Meat ◽  
Broiler Industry ◽  
Broiler Production ◽  
Pathogenic Escherichia Coli ◽  
The Us

United States is the largest producer and the second largest exporter of broiler meat in the world. In the US, broiler production is largely converting to antibiotic-free programs which has caused an increase in morbidity and mortality within broiler farms. Escherichia coli and Clostridium perfringens are two important pathogenic bacteria readily found in the broiler environment and result in annual billion-dollar losses from colibacillosis, gangrenous dermatitis, and necrotic enteritis. The broiler industry is in search of non-antibiotic alternatives including novel vaccines, prebiotics, probiotics, and housing management strategies to mitigate production losses due to these diseases. This review provides an overview of the broiler industry and antibiotic free production, current challenges, and emerging research on antibiotic alternatives to reduce pathogenic microbial presence and improve bird health.

scholarly journals Avian Pathogenic Escherichia coli and Clostridium perfringens: Challenges in ‘No Antibiotics Ever’ Broiler Production and Potential Solutions

2020 ◽  
Author(s):  
Courtney Fancher ◽  
Li Zhang ◽  
Aaron Kiess ◽  
Pratima Adhikari ◽  
Thu Dinh ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Clostridium Perfringens ◽  
Pathogenic Bacteria ◽  
Management Strategies ◽  
Necrotic Enteritis ◽  
Broiler Meat ◽  
Broiler Industry ◽  
Broiler Production ◽  
Pathogenic Escherichia Coli ◽  
Production Losses

United States is the largest producer and the second largest exporter of broiler meat in the world. In the U.S, broiler production is largely converting to antibiotic-free programs which has caused an increase in morbidity and mortality within broiler farms. Escherichia coli and Clostridium perfringens are two important pathogenic bacteria readily found in the broiler environment and result in annual billion-dollar losses from colibacillosis, gangrenous dermatitis, and necrotic enteritis. Broiler industry is in search of non-antibiotic alternatives including novel vaccines, prebiotics, probiotics, and housing management strategies to mitigate production losses due to these diseases. This review provides an overview of the broiler industry and antibiotic free production, current challenges, and emerging research on antibiotic alternatives to reduce pathogenic microbial presence and improve bird health.

scholarly journals Usages of Salvia officinalis Boiled Water Extract for Pathogenic Escherichia coli Exclusion at Elevated Region

2021 ◽  
Vol 2 (3) ◽  
pp. 01-03
Author(s):  
Sherifa Sabra
Keyword(s):  
Escherichia Coli ◽  
Pathogenic Bacteria ◽  
Water Extract ◽  
Salvia Officinalis ◽  
Bacterial Suspension ◽  
Water Extracts ◽  
Pathogenic Escherichia Coli ◽  
Chemical Content ◽  
Boiled Water ◽  
Chemical Contents

The aim was for tryout using daily regular Salvia officinalis boiled water extracts in "Arab and Saudi Society", especially at elevated region "Taif". That to prove its ability for pathogenic Escherichia coli exclusion and had antibiotic resistance. This could prove strength of chemical content and adherence of "Arab People" to use as regular and daily to stabilize body health and protect against pathogenic bacteria. Salvia officinalis was purchased from pharmacy at "Taif" and boiled water extract was made. Pathogenic Escherichia coli was obtained from a "Licensed Health Center"; culture was made and suspensions. Tryout by boiled water extract were added to bacterial suspension and then were kept in incubator. The samples were taken at hours (1, 3, 5, 7, 9, 11, 13, 15, 17 and 19); were cultured and were kept for 48 hours at 37 °C. The exclusion percent's had determined, Escherichia coli exclusion mean percentages rose 5% at third hour and then increased 7% at fifth hour and at ninth hour was 8%. Then it decreased at the eleventh hour and thirteenth hour (2% and 3%), then rose at the fifteenth hour 10%. It decreased 5% at the seventeenth hour, and then returned and rose at the nineteenth hour 12%. It was concluded Salvia officinalis boiled water extracts effects on pathogenic Escherichia coli exclusion was found during one growth bacteria cycle, indicated the characteristics of chemical contents and good daily habit. It was recommend continuing as "Arabian Habit" Salvia officinalis boiled water extracts for health and protection stability.

Microbiological Quality of Hot Meals Served by Airlines

1998 ◽  
Vol 61 (8) ◽  
pp. 1052-1056 ◽  
Author(s):  
MAIJA HATAKKA
Keyword(s):  
Escherichia Coli ◽  
Staphylococcus Aureus ◽  
Clostridium Perfringens ◽  
Pathogenic Bacteria ◽  
Microbiological Quality ◽  
Geometric Means ◽  
E Coli ◽  
The World ◽  
And Staphylococcus Aureus

The microbiological quality of 1,012 hot meals served on aircraft was studied in 1991 to 1994. The material included dishes prepared in 33 countries all over the world. The geometric means of aerobic colony counts and Escherichia coli were significantly lower in breakfasts (P < 0.05) than in main dishes. Pathogenic bacteria were found in 30 samples (3.0%), Bacillus cereus being the most common pathogen. The frequencies of B. cereus and Staphylococcus aureus did not differ between breakfasts and main dishes. Many of the samples exceeded the minimum acceptable microbiological standards recommended by the Association of European Airlines (AEA) for E. coli, S. aureus, B. cereus, Clostridium perfringens, and Salmonella; i.e., 8.2%, 0.6%, 0.7%, 0.7% and 0.3%, respectively. There were considerable differences in aerobic colony counts and E. coli counts between countries where the food was prepared.

scholarly journals High diversity and variability of pipolins among a wide range of pathogenic Escherichia coli strains

2020 ◽  
Author(s):  
Saskia-Camille Flament-Simon ◽  
María de Toro ◽  
Liubov Chuprikova ◽  
Miguel Blanco ◽  
Juan Moreno-González ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Pathogenic Bacteria ◽  
Phylogenetic Groups ◽  
Dna Viruses ◽  
E Coli ◽  
Host Interaction ◽  
Attachment Sites ◽  
Pathogenic Escherichia Coli ◽  
Wide Range ◽  
Recent Addition

AbstractSelf-synthesizing transposons are integrative mobile genetic elements (MGEs) that encode their own B-family DNA polymerase (PolB). Discovered a few years ago, they are proposed as key players in the evolution of several groups of DNA viruses and virus-host interaction machinery. Pipolins are the most recent addition to the group, are integrated in the genomes of bacteria from diverse phyla and also present as circular plasmids in mitochondria. Remarkably, pipolins-encoded PolBs are proficient DNA polymerases endowed with DNA priming capacity, hence the name, primer-independent PolB (piPolB).We have now surveyed the presence of pipolins in a collection of 2238 human and animal pathogenic Escherichia coli strains and found that, although detected in only 25 new isolates (1.1%), they are present in E. coli strains from a wide variety of pathotypes, serotypes, phylogenetic groups and sequence types. Overall, the pangenome of strains carrying pipolins is highly diverse, despite the fact that a considerable number of strains belongs to only three clonal complexes (CC10, CC23 and CC32). Comparative analysis with a set of 67 additional pipolin-harboring strains from GenBank further confirmed these results. The genetic structure of pipolins shows great flexibility and variability, with the piPolB gene and the attachment sites being the only common features. Most pipolins contain one or more recombinases that would be involved in excision/integration of the element in the same conserved tRNA gene. This mobilization mechanism might explain the apparent incompatibility of pipolins with other integrative MGEs such as integrons.In addition, analysis of cophylogeny between pipolins and pipolin-harboring strains showed a lack of congruence between several pipolins and their host strains, in agreement with horizontal transfer between hosts. Overall, these results indicate that pipolins can serve as a vehicle for genetic transfer among circulating E. coli and possibly also among other pathogenic bacteria.

scholarly journals Characterization of a Hemoglobin Protease Secreted by the Pathogenic Escherichia coli Strain EB1

1998 ◽  
Vol 188 (6) ◽  
pp. 1091-1103 ◽  
Author(s):  
Ben R. Otto ◽  
Silvy J.M. van Dooren ◽  
Jan H. Nuijens ◽  
Joen Luirink ◽  
Bauke Oudega
Keyword(s):  
Escherichia Coli ◽  
Pathogenic Bacteria ◽  
Affinity Purification ◽  
Coli Strain ◽  
E Coli ◽  
Heme Acquisition ◽  
Pathogenic Escherichia Coli ◽  
Iga1 Protease ◽  
Animal Pathogens

Many pathogenic bacteria can use heme compounds as a source of iron. Pathogenic Escherichia coli strains are capable of using hemoglobin as an iron source. However, the mechanism of heme acquisition from hemoglobin is not understood for this microorganism. We present the first molecular characterization of a hemoglobin protease (Hbp) from a human pathogenic E. coli strain. The enzyme also appeared to be a heme-binding protein. Affinity purification of this bifunctional protein enabled us to identify the extracellular gene product, and to clone and analyze its gene. A purification procedure developed for Hbp allowed us to perform functional studies. The protein interacted with hemoglobin, degraded it and subsequently bound the released heme. These results suggest that the protein is involved in heme acquisition by this human pathogen. Hbp belongs to the so-called IgA1 protease-like proteins, as indicated by the kinetics of its membrane transfer and DNA sequence similarity. The gene of this protein appears to be located on the large pColV-K30 episome, that only has been isolated from human and animal pathogens. All these characteristics indicate that Hbp may be an important virulence factor that may play a significant role in the pathogenesis of E. coli infections.

scholarly journals Occurrence of Colibacillosis in Broilers and Its Relationship With Avian Pathogenic Escherichia coli (APEC) Population Structure and Molecular Characteristics

2021 ◽  
Vol 8 ◽  
Author(s):  
Ilias Apostolakos ◽  
Andrea Laconi ◽  
Lapo Mughini-Gras ◽  
Özlem Şahan Yapicier ◽  
Alessandra Piccirillo
Keyword(s):  
Escherichia Coli ◽  
Population Structure ◽  
Virulence Gene ◽  
Genotypic Diversity ◽  
Economic Loss ◽  
Molecular Characteristics ◽  
E Coli ◽  
Broiler Production ◽  
Pathogenic Escherichia Coli ◽  
Production Stages

Avian pathogenic Escherichia coli (APEC) causes colibacillosis, the disease with the highest economic loss for the broiler industry. However, studies focusing on the prevalence and population structure of APEC in the broiler production pyramid are scarce. Here, we used genotyping and serotyping data to elucidate the APEC population structure and its changes in different broiler production stages along with whole-genome sequencing (WGS) in a subset of APEC isolates to determine transmission patterns amongst dominant APEC sequence types (STs) and characterize them in detail. Comparison of genotypes encountered in both APEC and avian fecal E. coli (AFEC) provided further insights. Overall, APEC-related mortality, as the proportion of the total sampled mortality in the broiler production, was high (35%), while phylogroup C and serogroup O78 were predominant amongst APEC isolates. We found a low (34.0%) and high (53.3%) incidence of colibacillosis in chicks and end-cycle broilers, respectively, which may be related to a shift in APEC genotypes, suggesting a trend from commensalism to pathogenicity across different broiler production stages. Despite considerable APEC genotypic diversity, there was substantial genotype overlap (40.9%, overall) over the production stages and convergence of STs to the four clusters. Within these clusters, WGS data provided evidence of clonal transmission events and revealed an enriched virulence and resistance APEC repertoire. More specifically, sequenced APEC were assigned to defined pathotypes based on their virulence gene content while the majority (86%) was genotypically multi-drug resistant. Interestingly, WGS-based phylogeny showed that a subset of APEC, which are cephalosporin-resistant, may originate directly from cephalosporin-resistant AFEC. Finally, exploration of the APEC plasmidome indicated that the small fraction of the APEC virulome carried by IncF plasmids is pivotal for the manifestation of the APEC pathotype; thus, plasmid exchange can promote pathogenicity in strains that are at the edge of the commensal and pathogenic states.

scholarly journals OPTIMIZATION OF MOLECULAR DETECTION FOR Vibrio cholerae and PATHOGENIC Escherichia coli USING MULTIPLEX PCR

2021 ◽  
pp. e299
Author(s):  
Diana Elizabeth Waturangi ◽  
Jason Petrus ◽  
Rico Kosasih ◽  
Felicia Roseline
Keyword(s):  
Escherichia Coli ◽  
Multiplex Pcr ◽  
Vibrio Cholerae ◽  
False Positive ◽  
Rapid Detection ◽  
Pathogenic Bacteria ◽  
Molecular Detection ◽  
False Negative ◽  
E Coli ◽  
Pathogenic Escherichia Coli

Vibrio cholerae and pathogenic Escherichia coli were considered as main causative agent foodborne diseases especially in many developing countries, such as Indonesia. Thereby, rapid detection of these pathogenic bacteria is necessary to treat food-borne related diseases causing by these bacteria. In this case, multiplex PCR allows multiple genes amplification in one reaction thereby enable to perform rapid detection of these pathogenic bacteria. The objective of this study is to optimize uniplex and multiples PCR of V. cholerae and pathogenic E. coli detection and determine the sensitivity and specificity of this assays. We used various virulence genes for each pathogenic bacterium as markers for uniplex and multiplex PCR detection. Based on this research, the optimum results of V. cholerae and pathogenic E. coli were obtained with a primer concentration of 16 µM for ctxA and ompU, 30 µM for ace, and 50 µM for zot, and toxR; 2 µM for elt and 5 µM for stx, respectively. Finally, based on the standardization method by ISO/TS 20836 these assays had 0% false positive, 0% false negative, 100% specificity, and 100% sensitivity; 0% false positive, 4% false negative, 100% specificity, and 96% sensitivity for V. cholerae and pathogenic E. coli respectively. The optimized method was qualified to be used as a molecular detection for V. cholerae as well as EHEC and ETEC detection according to ISO/TS 20836 (2017)  from drinking water samples.

scholarly journals Spread of avian pathogenic Escherichia coli ST117 O78:H4 in Nordic broiler production

BMC Genomics ◽  
2017 ◽  
Vol 18 (1) ◽  
Author(s):  
Troels Ronco ◽  
Marc Stegger ◽  
Rikke Heidemann Olsen ◽  
Camilla Sekse ◽  
Anne Bang Nordstoga ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Avian Pathogenic Escherichia Coli ◽  
Broiler Production ◽  
Pathogenic Escherichia Coli

scholarly journals Isolation and characterization of Clostridium perfringens strains isolated from ostriches (Struthio camelus) in Vietnam

2020 ◽  
Vol 13 (8) ◽  
pp. 1679-1684
Author(s):  
Tham Thi Nguyen ◽  
Hung Vu-Khac ◽  
Tan Duc Nguyen
Keyword(s):  
Clostridium Perfringens ◽  
Pathogenic Bacteria ◽  
Necrotic Enteritis ◽  
Fecal Samples ◽  
Isolation And Characterization ◽  
Sds Page ◽  
Pcr Method ◽  
Encoding Gene

Background and Aim: Clostridium perfringens can cause enteritis in ostriches. The toxin release is believed to play a major role in determining pathogenesis properties of these pathogenic bacteria. This study was conducted to isolate and characterize C. perfringens strains from ostriches in Vietnam for identifying if particular virulence factors of these pathogenic bacteria are associated with enteritis progress in ostriches. Materials and Methods: The prevalence of cpa, cpb, iA, etx, cpe, and cpb2 genes among C. perfringens isolates was determined by a multiplex polymerase chain reaction (PCR) method. The NetB toxin-encoding gene was detected by PCR and then sequenced to observe their variation. The expression of NetB toxin was checked by SDS-PAGE. Results: A total of 116 C. perfringens isolates were obtained from 318 fecal samples and 105 intestinal organs. Of 80 isolates from fecal samples, 33 isolates were from healthy and 47 isolates were from diseased ostriches. The results of multiplex PCR showed that all 116 C. perfringens strains from healthy and enteric disordered ostriches were positive for the alpha toxin-encoding gene (cpa). The cpe and cpb2 genes were found in only one and five diseased ostriches, respectively. The netB gene was detected in 1/33 (3.03%) C. perfringens isolates from healthy ostriches, in 8/47 (17.05%) isolates from feces, and in 7/36 (19.44%) intestinal contents of diseased ostriches. The full-length sequences of 5 out of 15 netB-positive isolates from diseased ostriches showed 100% identity to each other as well as to the netB sequences available in GenBank. All of these five isolates produced NetB toxin in vitro. Conclusion: Type A is the most prevalent among C. perfringens isolates from ostriches in Vietnam. Especially, the study provides data emphasizing the role of NetB toxin in causing necrotic enteritis by C. perfringens in ostriches.

scholarly journals A Genomic Island of an Extraintestinal Pathogenic Escherichia coli Strain Enables the Metabolism of Fructooligosaccharides, Which Improves Intestinal Colonization

2008 ◽  
Vol 191 (1) ◽  
pp. 388-393 ◽  
Author(s):  
Catherine Schouler ◽  
Ahmed Taki ◽  
Iman Chouikha ◽  
Maryvonne Moulin-Schouleur ◽  
Philippe Gilot
Keyword(s):  
Escherichia Coli ◽  
Pathogenic Bacteria ◽  
Genomic Island ◽  
Animal Health ◽  
Coli Strain ◽  
Growth Promoters ◽  
Pathogenic Escherichia Coli ◽  
Antibiotic Growth Promoters ◽  
High Level ◽  
Time Decrease

ABSTRACT Prebiotics such as fructooligosaccharides (FOS) are increasingly being used in some countries for improving human and animal health and as an alternative to antibiotic growth promoters in animals, with various degrees of success. It has been observed that FOS stimulate the proliferation of probiotic bacteria and, at the same time, decrease the population of bacteria associated with disease. This observation assumes that pathogenic bacteria do not metabolize FOS and, therefore, lose their competitive advantage over beneficial bacteria. Here we present evidence that some pathogenic Escherichia coli strains can metabolize FOS and show that this property helps the bacterium colonize the intestine. These findings highlight the potential risk that a high level of prebiotic usage could lead to the emergence of well-adapted pathogenic strains that metabolize prebiotic substances.

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