scholarly journals Omics Analysis for Dinoflagellates Biology Research

2019 ◽  
Vol 7 (9) ◽  
pp. 288 ◽  
Author(s):  
Bi ◽  
Wang ◽  
Zhang
Keyword(s):  
Harmful Algal Blooms ◽  
Algal Blooms ◽  
Liquid Crystalline ◽  
Molecular Mechanisms ◽  
Harmful Algal Bloom ◽  
Biological Properties ◽  
Shellfish Poisoning ◽  
Omics Technologies ◽  
Metabolic Characteristics ◽  
Essential Components

Dinoflagellates are important primary producers for marine ecosystems and are also responsible for certain essential components in human foods. However, they are also notorious for their ability to form harmful algal blooms, and cause shellfish poisoning. Although much work has been devoted to dinoflagellates in recent decades, our understanding of them at a molecular level is still limited owing to some of their challenging biological properties, such as large genome size, permanently condensed liquid-crystalline chromosomes, and the 10-fold lower ratio of protein to DNA than other eukaryotic species. In recent years, omics technologies, such as genomics, transcriptomics, proteomics, and metabolomics, have been applied to the study of marine dinoflagellates and have uncovered many new physiological and metabolic characteristics of dinoflagellates. In this article, we review recent application of omics technologies in revealing some of the unusual features of dinoflagellate genomes and molecular mechanisms relevant to their biology, including the mechanism of harmful algal bloom formations, toxin biosynthesis, symbiosis, lipid biosynthesis, as well as species identification and evolution. We also discuss the challenges and provide prospective further study directions and applications of dinoflagellates.

Neurobehavioral effects of harmful algal bloom (HAB) toxins: A critical review

2005 ◽  
Vol 11 (3) ◽  
pp. 331-338 ◽  
Author(s):  
MELISSA A. FRIEDMAN ◽  
BONNIE E. LEVIN
Keyword(s):  
Harmful Algal Blooms ◽  
Algal Blooms ◽  
Harmful Algal Bloom ◽  
Shellfish Poisoning ◽  
Amnesic Shellfish Poisoning ◽  
Fish Poisoning ◽  
Neuropsychological Changes ◽  
Neurobehavioral Symptoms ◽  
Neuropsychological Impairments ◽  
Neurobehavioral Effects

Human exposure to naturally occurring marine toxins has been associated with a range of neurobehavioral abnormalities. The toxins are produced by harmful algal blooms (HABs) and are typically contracted through seafood consumption. The primary target of many of the HAB toxins is the neurologic system, and the neurobehavioral symptoms associated with the HAB illnesses have influenced public health policy. The HAB-related illnesses most frequently linked to neuropsychological disturbance are Amnesic Shellfish Poisoning, Ciguatera Fish Poisoning, and Possible Estuarine Associated Syndrome, which is associated with exposure to thePfiesteria piscicidaorganism. Although the neurophysiologic mechanisms underlying many of the HAB illnesses have been well delineated, the literature examining the neuropsychological impairments is unclear and needs to be defined. This review is intended to introduce an emerging area of study linking HAB illnesses with neuropsychological changes. (JINS, 2005,11, 331–338.)

scholarly journals PUBLIC AWARENESS ON HARMFUL ALGAL BLOOM (HAB) IN LAMPUNG BAY

2015 ◽  
Vol 38 (2) ◽  
pp. 71-75 ◽  
Author(s):  
Vishnu Aditya ◽  
Asep Koswara ◽  
Nurul Fitriya ◽  
Arief Rachman ◽  
Tumpak Sidabutar ◽  
...  
Keyword(s):  
Water Quality ◽  
Harmful Algal Blooms ◽  
Algal Blooms ◽  
Harmful Algal Bloom ◽  
Public Awareness ◽  
Water Quality Monitoring ◽  
Causative Organism ◽  
Public Knowledge ◽  
Shellfish Poisoning ◽  
Marine Aquaculture

Harmful algal blooms (HABs) cause various problems, such as water quality degradation, fauna mass mortality and impairment of human health. Water quality monitoring in Lampung Bay has been conducted by Lampung Marine Aquaculture Office (BBL) of the Ministry of Marine Affairs and Fisheries since 1994. Occurrence of Pyrodinium bahamense var. compressum (Pbc), a causative organism of paralytic shellfish poisoning (PSP), has been recorded but threats caused by HABs have never been reported. A study aimed to know the level of public knowledge and awareness about HABs in Lampung Bay has been conducted. The components of group respondents consisted oflocal governments, academics and coastal communities. Awareness from each component was examined includinggeneral HAB knowledge, HAB impact to the community, HAB occurence and local knowledge of HAB. Data of HAB knowledge were collected through questionnaire and focus group  discussion. The result showed that 40.5% of respondents had knowledge of HABs phenomena and 51.3% respondents only know signs or indicators of HAB occurrence, while only 1.4% respondents had knowledge of local HAB occurences. The direct impact of HABs to the community was not commonly known by the respondents. Only a few cases of poisoning after eating seafood were reported. It can be concluded that there was lack of public knowledge and awareness on HABs in LampungBay. Intensive public awareness programs about HABs should be conducted in order to reduce risk towards HABs in Lampung Bay.

scholarly journals Developmental exposure to domoic acid disrupts startle response behavior and circuitry

2021 ◽  
Author(s):  
Jennifer M Panlilio ◽  
Ian T. Jones ◽  
Matthew C. Salanga ◽  
Neelakanteswar M Aluru ◽  
Mark E Hahn
Keyword(s):  
Startle Response ◽  
Harmful Algal Blooms ◽  
Algal Blooms ◽  
Domoic Acid ◽  
Molecular Mechanisms ◽  
Harmful Algal Bloom ◽  
Developmental Exposure ◽  
Glutamatergic Signaling ◽  
Transgenic Lines ◽  
Angular Velocities

Harmful algal blooms produce potent neurotoxins that accumulate in seafood and are hazardous to human health. Developmental exposure to the harmful algal bloom toxin, domoic acid (DomA), has behavioral consequences well into adulthood, but the cellular and molecular mechanisms are largely unknown. To assess these, we exposed zebrafish embryos to DomA during the previously identified window of susceptibility (2 days post-fertilization) and used the well-known startle response circuit as a tool to identify specific neuronal components that are targeted by exposure to DomA. Exposure to DomA reduced the probability of eliciting a startle after auditory/vibrational or electrical stimuli and led to the dramatic reduction of one type of startle, short latency c-start (SLC) responses. Furthermore, DomA-exposed larvae had altered kinematics of both SLC and long latency c-start (LLC) startle responses, exhibiting shallower bend angles and slower maximal angular velocities. Using vital dye staining, immunolabelling, and live imaging of transgenic lines, we determined that while the sensory inputs were intact, the reticulospinal neurons required for SLC responses were absent in most DomA-exposed larvae. Furthermore, axon tracing revealed that DomA-treated larvae also showed significantly reduced primary motor neuron axon collaterals. Overall, these results show that developmental exposure to DomA leads to startle deficits by targeting specific subsets of neurons. These findings provide mechanistic insights into the neurodevelopmental effects of excess glutamatergic signaling caused by exposure to DomA. It further provides a model for using the startle response circuit to identify neuronal populations targeted by toxin or toxicant exposures.

scholarly journals Effects of the Marine Biotoxins Okadaic Acid and Dinophysistoxins on Fish

2021 ◽  
Vol 9 (3) ◽  
pp. 293
Author(s):  
Mauro Corriere ◽  
Lucía Soliño ◽  
Pedro Reis Costa
Keyword(s):  
Okadaic Acid ◽  
Harmful Algal Blooms ◽  
Algal Blooms ◽  
Current Knowledge ◽  
Global Climate ◽  
Scientific Evidence ◽  
Shellfish Poisoning ◽  
Morphological Alterations ◽  
The Impact ◽  
Dsp Toxins

Natural high proliferations of toxin-producing microorganisms in marine and freshwater environments result in dreadful consequences at the socioeconomically and environmental level due to water and seafood contamination. Monitoring programs and scientific evidence point to harmful algal blooms (HABs) increasing in frequency and intensity as a result of global climate alterations. Among marine toxins, the okadaic acid (OA) and the related dinophysistoxins (DTX) are the most frequently reported in EU waters, mainly in shellfish species. These toxins are responsible for human syndrome diarrhetic shellfish poisoning (DSP). Fish, like other marine species, are also exposed to HABs and their toxins. However, reduced attention has been given to exposure, accumulation, and effects on fish of DSP toxins, such as OA. The present review intends to summarize the current knowledge of the impact of DSP toxins and to identify the main issues needing further research. From data reviewed in this work, it is clear that exposure of fish to DSP toxins causes a range of negative effects, from behavioral and morphological alterations to death. However, there is still much to be investigated about the ecological and food safety risks related to contamination of fish with DSP toxins.

Using Fundamental Optical Property Sensors for Characterization of Biogeochemical Materials and Processes in Marine Waters

2008 ◽  
Vol 42 (1) ◽  
pp. 75-83 ◽  
Author(s):  
Casey Moore
Keyword(s):  
Optical Properties ◽  
Optical Property ◽  
Harmful Algal Blooms ◽  
Algal Blooms ◽  
Natural Waters ◽  
Harmful Algal Bloom ◽  
Light Level ◽  
Ecosystem Dynamics ◽  
Wide Range ◽  
Biogeochemical Parameters

Over the past ten years, efforts to characterize the optical properties of Earth's natural waters have largely merged with the need to better understand underlying biological and chemical processes. Fundamental optical properties such as light level, absorption, scattering and fluorescence are now being utilized with increasing effectiveness to specify particulate and dissolved in-water components in a wide range of applications, including detection of harmful algal blooms, studying ecosystem dynamics, monitoring the effect of industrial and agricultural pollutants, and understanding carbon sequestration processes in the oceans. A diverse offering of commercial optical sensing products capable for research, routine measurements, and in some cases, operational monitoring are now available. These technologies have provided the scientific community with a set of tools for developing, testing, and placing into practice analytical and semi-analytical methods to infer specific biogeochemical parameters and processes. As a result, new, more specialized sensors are now emerging. New sensors couple basic optical property measurements with processing algorithms to provide specific indicators for Harmful Algal Bloom (HAB) identification, carbon products, nutrients, and particle size distributions. The basic measurement methods are described and examples of devices incorporating them are provided to illustrate their use in modern oceanographic research and monitoring.

scholarly journals Saxitoxin and tetrodotoxin bioavailability increases in future oceans

2019 ◽  
Author(s):  
C.C. Roggatz ◽  
N. Fletcher ◽  
D.M. Benoit ◽  
A.C. Algar ◽  
A. Doroff ◽  
...  
Keyword(s):  
Species Interactions ◽  
Harmful Algal Blooms ◽  
Algal Blooms ◽  
Paralytic Shellfish Poisoning ◽  
Ecosystem Stability ◽  
Shellfish Poisoning ◽  
Marine Life ◽  
Paralytic Shellfish ◽  
Water Ph ◽  
Ph Increase

Increasing atmospheric levels of carbon dioxide are largely absorbed by the world’s oceans, decreasing surface water pH1. In combination with increasing ocean temperatures, these changes have been identified as a major sustainability threat to future marine life2. Interactions between marine organisms are known to depend on biomolecules, but the influence of oceanic pH on their bioavailability and functionality remains unexplored. Here we show that global change significantly impacts two ecological keystone molecules3 in the ocean, the paralytic toxins saxitoxin (STX) and tetrodotoxin (TTX). Increasing temperatures and declining pH increase the abundance of the toxic forms of these two neurotoxins in the water. Our geospatial global model highlights where this increased toxicity could intensify the devastating impact of harmful algal blooms on ecosystems in the future, for example through an increased incidence of paralytic shellfish poisoning (PSP). We also use these results to calculate future saxitoxin toxicity levels in Alaskan clams, Saxidomus gigantea, showing critical exceedance of limits save for consumption. Our findings for TTX and STX exemplarily highlight potential consequences of changing pH and temperature on chemicals dissolved in the sea. This reveals major implications not only for ecotoxicology, but also for chemical signals mediating species interactions such as foraging, reproduction, or predation in the ocean with unexplored consequences for ecosystem stability and ecosystem services.

scholarly journals The Southeast Alaska Tribal Ocean Research (SEATOR) Partnership: Addressing Data Gaps in Harmful Algal Bloom Monitoring and Shellfish Safety in Southeast Alaska

Toxins ◽  
2020 ◽  
Vol 12 (6) ◽  
pp. 407 ◽  
Author(s):  
John R. Harley ◽  
Kari Lanphier ◽  
Esther G. Kennedy ◽  
Tod A. Leighfield ◽  
Allison Bidlack ◽  
...  
Keyword(s):  
Surface Temperature ◽  
Sea Surface Temperature ◽  
Harmful Algal Blooms ◽  
Algal Blooms ◽  
Harmful Algal Bloom ◽  
Sea Surface ◽  
Southeast Alaska ◽  
Paralytic Shellfish Toxins ◽  
Tribal Governments ◽  
Salinity Data

Many communities in Southeast Alaska harvest shellfish such as mussels and clams as an important part of a subsistence or traditional diet. Harmful algal blooms (HABs) of phytoplankton such as Alexandrium spp. produce toxins that can accumulate in shellfish tissues to concentrations that can pose a hazard for human health. Since 2013, several tribal governments and communities have pooled resources to form the Southeast Alaska Tribal Ocean Research (SEATOR) network, with the goal of minimizing risks to seafood harvest and enhancing food security. SEATOR monitors toxin concentrations in shellfish and collects and consolidates data on environmental variables that may be important predictors of toxin levels such as sea surface temperature and salinity. Data from SEATOR are publicly available and are encouraged to be used for the development and testing of predictive algorithms that could improve seafood risk assessment in Southeast Alaska. To date, more than 1700 shellfish samples have been analyzed for paralytic shellfish toxins (PSTs) in more than 20 locations, with potentially lethal concentrations observed in blue mussels (Mytilus trossulus) and butter clams (Saxidomus gigantea). Concentrations of PSTs exhibit seasonality in some species, and observations of Alexandrium are correlated to sea surface temperature and salinity; however, concentrations above the threshold of concern have been found in all months, and substantial variation in concentrations of PSTs remain unexplained.

scholarly journals Determination of Cell Abundances and Paralytic Shellfish Toxins in Cultures of the Dinoflagellate Gymnodinium catenatum by Fourier Transform Near Infrared Spectroscopy

2018 ◽  
Vol 6 (4) ◽  
pp. 147 ◽  
Author(s):  
Marta Lopes ◽  
Ana Amorim ◽  
Cecília Calado ◽  
Pedro Reis Costa
Keyword(s):  
Harmful Algal Blooms ◽  
Algal Blooms ◽  
Near Infrared ◽  
Monitoring Program ◽  
Nir Spectroscopy ◽  
Shellfish Poisoning ◽  
Toxic Algae ◽  
Paralytic Shellfish ◽  
Gymnodinium Catenatum

Harmful algal blooms are responsible worldwide for the contamination of fishery resources, with potential impacts on seafood safety and public health. Most coastal countries rely on an intense monitoring program for the surveillance of toxic algae occurrence and shellfish contamination. The present study investigates the use of near infrared (NIR) spectroscopy for the rapid in situ determination of cell concentrations of toxic algae in seawater. The paralytic shellfish poisoning (PSP) toxin-producing dinoflagellate Gymnodinium catenatum was selected for this study. The spectral modeling by partial least squares (PLS) regression based on the recorded NIR spectra enabled the building of highly accurate (R2 = 0.92) models for cell abundance. The models also provided a good correlation between toxins measured by the conventional methods (high-performance liquid chromatography with fluorescence detection (HPLC-FLD)) and the levels predicted by the PLS/NIR models. This study represents the first necessary step in investigating the potential of application of NIR spectroscopy for algae bloom detection and alerting.

scholarly journals Metagenomic characterization of a harmful algal bloom using nanopore sequencing

2020 ◽  
Author(s):  
Peter W. Schafran ◽  
Victor Cai ◽  
Hsiao-Pei Yang ◽  
Fay-Wei Li
Keyword(s):  
Harmful Algal Blooms ◽  
Algal Blooms ◽  
Harmful Algal Bloom ◽  
Environmental Data ◽  
Nanopore Sequencing ◽  
Current Trends ◽  
Oxford Nanopore ◽  
Single Genome ◽  
Long Read

ABSTRACTWater bodies around the world are increasingly threatened by harmful algal blooms (HABs) under current trends of rising water temperature and nutrient load. Metagenomic characterization of HABs can be combined with water quality and environmental data to better understand and predict the occurrence of toxic events. However, standard short-read sequencing typically yields highly fragmented metagenomes, preventing direct connection of genes to a single genome. Using Oxford Nanopore long-read sequencing, we were able to obtain high quality metagenome-assembled genomes, and show that dominant organisms in a HAB are readily identified, though different analyses disagreed on the identity of rare taxa. Genes from diverse functional categories were found not only in the most dominant genera, but also in several less common ones. Using simulated datasets, we show that the Flongle flowcell may provide an option for HAB monitoring with less data, at the expense of failing to detect rarer organisms and increasing fragmentation of the metagenome. Based on these results, we believe that Nanopore sequencing provides a fast, portable, and affordable method for studying HABs.

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