scholarly journals Ample Arsenite Bio-Oxidation Activity in Bangladesh Drinking Water Wells: A Bonanza for Bioremediation?

2019 ◽  
Vol 7 (8) ◽  
pp. 246
Author(s):  
Zahid Hassan ◽  
Munawar Sultana ◽  
Sirajul I. Khan ◽  
Martin Braster ◽  
Wilfred F.M. Röling ◽  
...  
Keyword(s):  
Drinking Water ◽  
Ex Situ ◽  
Rrna Gene ◽  
Microbial Activities ◽  
16S Rrna Gene Sequences ◽  
Previous Survey ◽  
Oxidation Activity ◽  
Water Wells ◽  
Enriched Cultures ◽  
Biological Solutions

Millions of people worldwide are at risk of arsenic poisoning from their drinking water. In Bangladesh the problem extends to rural drinking water wells, where non-biological solutions are not feasible. In serial enrichment cultures of water from various Bangladesh drinking water wells, we found transfer-persistent arsenite oxidation activity under four conditions (aerobic/anaerobic; heterotrophic/autotrophic). This suggests that biological decontamination may help ameliorate the problem. The enriched microbial communities were phylogenetically at least as diverse as the unenriched communities: they contained a bonanza of 16S rRNA gene sequences. These related to Hydrogenophaga, Acinetobacter, Dechloromonas, Comamonas, and Rhizobium/Agrobacterium species. In addition, the enriched microbiomes contained genes highly similar to the arsenite oxidase (aioA) gene of chemolithoautotrophic (e.g., Paracoccus sp. SY) and heterotrophic arsenite-oxidizing strains. The enriched cultures also contained aioA phylotypes not detected in the previous survey of uncultivated samples from the same wells. Anaerobic enrichments disclosed a wider diversity of arsenite oxidizing aioA phylotypes than did aerobic enrichments. The cultivatable chemolithoautotrophic and heterotrophic arsenite oxidizers are of great interest for future in or ex-situ arsenic bioremediation technologies for the detoxification of drinking water by oxidizing arsenite to arsenate that should then precipitates with iron oxides. The microbial activities required for such a technology seem present, amplifiable, diverse and hence robust.

Monoglobus pectinilyticus gen. nov., sp. nov., a pectinolytic bacterium isolated from human faeces.

2020 ◽  
Author(s):  
CC Kim ◽  
WJ Kelly ◽  
ML Patchett ◽  
GW Tannock ◽  
Z Jordens ◽  
...  
Keyword(s):  
16S Rrna ◽  
16S Rrna Gene ◽  
Sequence Similarity ◽  
Middle Lamella ◽  
Rrna Gene ◽  
Gene Sequences ◽  
16S Rrna Gene Sequences ◽  
Citrus Peel ◽  
Human Faeces ◽  
The Family

© 2017 IUMS. A novel anaerobic pectinolytic bacterium (strain 14T) was isolated from human faeces. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain 14T belonged to the family Ruminococcaceae, but was located separately from known clostridial clusters within the taxon. The closest cultured relative of strain 14T was Acetivibrio cellulolyticus (89.7% sequence similarity). Strain 14T shared ~99% sequence similarity with cloned 16S rRNA gene sequences from uncultured bacteria derived from the human gut. Cells were Gram-stain-positive, non-motile cocci approximately 0.6μm in diameter. Strain 14T fermented pectins from citrus peel, apple, and kiwifruit as well as carbohydrates that are constituents of pectins and hemicellulose, such as galacturonic acid, xylose, and arabinose. TEM images of strain 14T, cultured in association with plant tissues, suggested extracellular fibrolytic activity associated with the bacterial cells, forming zones of degradation in the pectin-rich regions of middle lamella. Phylogenetic and phenotypic analysis supported the differentiation of strain 14T as a novel genus in the family Ruminococcaceae. The name Monoglobus pectinilyticus gen. nov., sp. nov. is proposed; the type strain is 14T (JCM 31914T=DSM 104782T).

An expert system for real-time well field management

2012 ◽  
Vol 12 (5) ◽  
pp. 699-706 ◽  
Author(s):  
B. S. Marti ◽  
G. Bauser ◽  
F. Stauffer ◽  
U. Kuhlmann ◽  
H.-P. Kaiser ◽  
...  
Keyword(s):  
Drinking Water ◽  
Expert System ◽  
Knowledge Base ◽  
Real Time ◽  
Urban Areas ◽  
Industrial Sites ◽  
Water Wells ◽  
Well Field ◽  
Field Management ◽  
Historical Management

Well field management in urban areas faces challenges such as pollution from old waste deposits and former industrial sites, pollution from chemical accidents along transport lines or in industry, or diffuse pollution from leaking sewers. One possibility to protect the drinking water of a well field is the maintenance of a hydraulic barrier between the potentially polluted and the clean water. An example is the Hardhof well field in Zurich, Switzerland. This paper presents the methodology for a simple and fast expert system (ES), applies it to the Hardhof well field, and compares its performance to the historical management method of the Hardhof well field. Although the ES is quite simplistic it considerably improves the water quality in the drinking water wells. The ES knowledge base is crucial for successful management application. Therefore, a periodic update of the knowledge base is suggested for the real-time application of the ES.

PREDICTING GROUNDWATER QUALITY IN DRINKING WATER WELLS IN THE GLACIAL AQUIFER SYSTEM, NORTHERN USA

2018 ◽  
Author(s):  
Melinda L. Erickson ◽  
◽  
Craig J. Brown ◽  
Paul E. Stackelberg ◽  
Bernard T. Nolan
Keyword(s):  
Drinking Water ◽  
Groundwater Quality ◽  
Aquifer System ◽  
Water Wells

ARSENIC CONCENTRATION VARIABILITY IN NEWLY CONSTRUCTED DRINKING WATER WELLS IN MINNESOTA, USA

2018 ◽  
Author(s):  
Emily Berquist ◽  
◽  
Helen Fitzgerald Malenda ◽  
Melinda L. Erickson
Keyword(s):  
Drinking Water ◽  
Arsenic Concentration ◽  
Water Wells

scholarly journals New Chitosan-Degrading Strains That Produce Chitosanases Similar to ChoA of Mitsuaria chitosanitabida

2005 ◽  
Vol 71 (9) ◽  
pp. 5138-5144 ◽  
Author(s):  
ChoongSoo Yun ◽  
Daiki Amakata ◽  
Yasuhiro Matsuo ◽  
Hideyuki Matsuda ◽  
Makoto Kawamukai
Keyword(s):  
Southern Hybridization ◽  
Glycosyl Hydrolase ◽  
Pcr Amplification ◽  
Rrna Gene ◽  
16S Rrna Gene Sequences ◽  
Glycosyl Hydrolase Family ◽  
Broad Variety ◽  
Hydrolase Family ◽  
The 16S Rrna Gene ◽  
Sequence Similarities

ABSTRACT The betaproteobacterium Mitsuaria chitosanitabida (formerly Matsuebacter chitosanotabidus) 3001 produces a chitosanase (ChoA) that is classified in glycosyl hydrolase family 80. While many chitosanase genes have been isolated from various bacteria to date, they show limited homology to the M. chitosanitabida 3001 chitosanase gene (choA). To investigate the phylogenetic distribution of chitosanases analogous to ChoA in nature, we identified 67 chitosan-degrading strains by screening and investigated their physiological and biological characteristics. We then searched for similarities to ChoA by Western blotting and Southern hybridization and selected 11 strains whose chitosanases showed the most similarity to ChoA. PCR amplification and sequencing of the chitosanase genes from these strains revealed high deduced amino acid sequence similarities to ChoA ranging from 77% to 99%. Analysis of the 16S rRNA gene sequences of the 11 selected strains indicated that they are widely distributed in the β and γ subclasses of Proteobacteria and the Flavobacterium group. These observations suggest that the ChoA-like chitosanases that belong to family 80 occur widely in a broad variety of bacteria.

scholarly journals Occurrence of carcinogenic illudane glycosides in drinking water wells

2021 ◽  
Vol 33 (1) ◽  
Author(s):  
Natasa Skrbic ◽  
Vaidotas Kisielius ◽  
Ann-Katrin Pedersen ◽  
Sarah C. B. Christensen ◽  
Mathilde J. Hedegaard ◽  
...  
Keyword(s):  
Drinking Water ◽  
Health Concern ◽  
Liquid Chromatography Mass Spectrometry ◽  
Deep Groundwater ◽  
Hydrolysis Products ◽  
First Finding ◽  
Water Wells ◽  
Shallow Wells ◽  
Great Health ◽  
Groundwater Wells

Abstract Background Ptaquiloside (PTA), caudatoside (CAU) and ptesculentoside (PTE) are carcinogenic illudane glycosides found in bracken ferns (Pteridium spp.) world-wide. The environmentally mobile PTA entails both acute and chronic toxicity. A comparable risk might be associated with the structurally similar CAU and PTE. It is of great health concern if these compounds are present in drinking water, however, it is currently unknown if these compounds can detected in wells in bracken-dominated regions. This study investigates the presence of PTA, CAU, PTE, and their corresponding hydrolysis products pterosins B (PtB), A (PtA) and G (PtG) in water wells in Denmark, Sweden and Spain. Water samples from a total of 77 deep groundwater wells (40–100 m) and shallow water wells (8–40 m) were collected and preserved in the field, pre-concentrated in the laboratory and analysed by liquid chromatography–mass spectrometry (LC–MS). Results Deep groundwater wells contained neither illudane glycosides nor their pterosins. However, seven private shallow wells contained at least one of the illudane glycosides and/or pterosins at concentrations up to 0.27 µg L−1 (PTA), 0.75 µg L−1 (CAU), 0.05 µg L−1 (PtB), 0.03 µg L−1 (PtA) and 0.28 µg L−1 (PtG). This is the first finding of illudane glycosides and pterosins in drinking water wells. Conclusions Detected concentrations of illudane glycosides in some of investigated wells exceeded the suggested maximum tolerable concentrations of PTA, although they were used for drinking water purpose. Contaminated wells were shallow with neutral pH and lower electric conductivity compared to deep groundwater wells with no illudane glycosides nor pterosins.

scholarly journals The Termite Group I Phylum Is Highly Diverse and Widespread in the Environment

2007 ◽  
Vol 73 (20) ◽  
pp. 6682-6685 ◽  
Author(s):  
Daniel P. R. Herlemann ◽  
Oliver Geissinger ◽  
Andreas Brune
Keyword(s):  
Phylogenetic Analysis ◽  
16S Rrna ◽  
16S Rrna Gene ◽  
Rrna Gene ◽  
Gene Sequences ◽  
16S Rrna Gene Sequences ◽  
Specific Primers ◽  
Environmental Distribution ◽  
Data Set ◽  
Group I

ABSTRACT The bacterial candidate phylum Termite Group I (TG-1) presently consists mostly of “Endomicrobia,” which are endosymbionts of flagellate protists occurring exclusively in the hindguts of termites and wood-feeding cockroaches. Here, we show that public databases contain many, mostly undocumented 16S rRNA gene sequences from other habitats that are affiliated with the TG-1 phylum but are only distantly related to “Endomicrobia.” Phylogenetic analysis of the expanded data set revealed several diverse and deeply branching lineages comprising clones from many different habitats. In addition, we designed specific primers to explore the diversity and environmental distribution of bacteria in the TG-1 phylum.

Exploration of E. coli contamination drivers in private drinking water wells: An application of machine learning to a large, multivariable, geo-spatio-temporal dataset

2021 ◽  
Vol 197 ◽  
pp. 117089
Author(s):  
Katie White ◽  
Sarah Dickson-Anderson ◽  
Anna Majury ◽  
Kevin McDermott ◽  
Paul Hynds ◽  
...  
Keyword(s):  
Machine Learning ◽  
Drinking Water ◽  
E Coli ◽  
Water Wells ◽  
Spatio Temporal

scholarly journals Distribution and recombination of Wolbachia endosymbionts in Korean coleopteran insects

2019 ◽  
Vol 43 (1) ◽  
Author(s):  
Gilsang Jeong ◽  
Taeman Han ◽  
Haechul Park ◽  
Soyeon Park ◽  
Pureum Noh
Keyword(s):  
16S Rrna ◽  
Phylogenetic Trees ◽  
Surface Protein ◽  
Rrna Gene ◽  
Infection Frequency ◽  
Gene Sequences ◽  
16S Rrna Gene Sequences ◽  
Endosymbiotic Bacteria ◽  
Molecular Machinery ◽  
Broad Scale

Abstract Background Wolbachia are among the most prevalent endosymbiotic bacteria and induce reproductive anomalies in various invertebrate taxa. The bacterium has huge impacts on host reproductive biology, immunity, evolution, and molecular machinery. However, broad-scale surveys of Wolbachia infections at the order scale, including the order Coleoptera, are limited. In this study, we investigated the Wolbachia infection frequency in 201 Coleopteran insects collected in Korea. Results A total of 26 species (12.8%) belonging to 11 families harbored Wolbachia. The phylogenetic trees of based on partial 16S rRNA gene sequences and partial Wolbachia surface protein (wsp) gene sequences were largely incongruent to that of their hosts. This result confirms that Wolbachia evolved independently from their hosts, Conclusion Phylogenetic trees suggest that complex horizontal gene transfer and recombination events occurred within and between divergent Wolbachia subgroups.

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