scholarly journals P-NUT: Predicting NUTrient Content from Short Text Descriptions

Mathematics ◽  
2020 ◽  
Vol 8 (10) ◽  
pp. 1811
Author(s):  
Gordana Ispirova ◽  
Tome Eftimov ◽  
Barbara Koroušić Seljak
Keyword(s):  
Machine Learning ◽  
Regression Models ◽  
Domain Knowledge ◽  
Nutrient Content ◽  
Short Description ◽  
Food Groups ◽  
Nutritional Content ◽  
Short Text ◽  
Tolerance Level ◽  
Vector Representations

Assessing nutritional content is very relevant for patients suffering from various diseases, professional athletes, and for health reasons is becoming part of everyday life for many. However, it is a very challenging task as it requires complete and reliable sources. We introduce a machine learning pipeline for predicting macronutrient values of foods using learned vector representations from short text descriptions of food products. On a dataset used from health specialists, containing short descriptions of foods and macronutrient values: we generate paragraph embeddings, introduce clustering in food groups, using graph-based vector representations, that include food domain knowledge information, and train regression models for each cluster. The predictions are for four macronutrients: carbohydrates, fat, protein and water. The highest accuracy was obtained for carbohydrate predictions – 86%, compared to the baseline – 27% and 36%. The protein predictions yielded the best results across all clusters, 53%–77% of the values fall in the tolerance-level range. These results were obtained using short descriptions, the embeddings can be improved if they are learned on longer descriptions, which would lead to better prediction results. Since the task of calculating macronutrients requires exact quantities of ingredients, these results obtained only from short description are a huge leap forward.

scholarly journals Domain Heuristic Fusion of Multi-Word Embeddings for Nutrient Value Prediction

Mathematics ◽  
2021 ◽  
Vol 9 (16) ◽  
pp. 1941
Author(s):  
Gordana Ispirova ◽  
Tome Eftimov ◽  
Barbara Koroušić Seljak
Keyword(s):  
Machine Learning ◽  
Prediction Models ◽  
Nutrient Content ◽  
Relevant Information ◽  
Word Embeddings ◽  
Short Text ◽  
Domain Specific ◽  
Nutrient Value ◽  
Protein Prediction ◽  
Vector Representations

Being both a poison and a cure for many lifestyle and non-communicable diseases, food is inscribing itself into the prime focus of precise medicine. The monitoring of few groups of nutrients is crucial for some patients, and methods for easing their calculations are emerging. Our proposed machine learning pipeline deals with nutrient prediction based on learned vector representations on short text–recipe names. In this study, we explored how the prediction results change when, instead of using the vector representations of the recipe description, we use the embeddings of the list of ingredients. The nutrient content of one food depends on its ingredients; therefore, the text of the ingredients contains more relevant information. We define a domain-specific heuristic for merging the embeddings of the ingredients, which combines the quantities of each ingredient in order to use them as features in machine learning models for nutrient prediction. The results from the experiments indicate that the prediction results improve when using the domain-specific heuristic. The prediction models for protein prediction were highly effective, with accuracies up to 97.98%. Implementing a domain-specific heuristic for combining multi-word embeddings yields better results than using conventional merging heuristics, with up to 60% more accuracy in some cases.

Mol2vec: Unsupervised Machine Learning Approach with Chemical Intuition

2017 ◽  
Author(s):  
Sabrina Jaeger ◽  
Simone Fulle ◽  
Samo Turk
Keyword(s):  
Machine Learning ◽  
Language Processing ◽  
Supervised Machine Learning ◽  
Learning Approach ◽  
Learning Approaches ◽  
Unsupervised Machine Learning ◽  
Feature Representations ◽  
Machine Learning Approach ◽  
The Individual ◽  
Vector Representations

Inspired by natural language processing techniques we here introduce Mol2vec which is an unsupervised machine learning approach to learn vector representations of molecular substructures. Similarly, to the Word2vec models where vectors of closely related words are in close proximity in the vector space, Mol2vec learns vector representations of molecular substructures that are pointing in similar directions for chemically related substructures. Compounds can finally be encoded as vectors by summing up vectors of the individual substructures and, for instance, feed into supervised machine learning approaches to predict compound properties. The underlying substructure vector embeddings are obtained by training an unsupervised machine learning approach on a so-called corpus of compounds that consists of all available chemical matter. The resulting Mol2vec model is pre-trained once, yields dense vector representations and overcomes drawbacks of common compound feature representations such as sparseness and bit collisions. The prediction capabilities are demonstrated on several compound property and bioactivity data sets and compared with results obtained for Morgan fingerprints as reference compound representation. Mol2vec can be easily combined with ProtVec, which employs the same Word2vec concept on protein sequences, resulting in a proteochemometric approach that is alignment independent and can be thus also easily used for proteins with low sequence similarities.

scholarly journals Searching for improvements in predicting human eye colour from DNA

2021 ◽  
Author(s):  
Magdalena Kukla-Bartoszek ◽  
Paweł Teisseyre ◽  
Ewelina Pośpiech ◽  
Joanna Karłowska-Pik ◽  
Piotr Zieliński ◽  
...  
Keyword(s):  
Machine Learning ◽  
Regression Models ◽  
Learning Algorithms ◽  
Machine Learning Algorithms ◽  
Sequencing Analysis ◽  
Learning Approaches ◽  
Human Eye ◽  
Software Analysis ◽  
Whole Exome ◽  
Eye Colour

AbstractIncreasing understanding of human genome variability allows for better use of the predictive potential of DNA. An obvious direct application is the prediction of the physical phenotypes. Significant success has been achieved, especially in predicting pigmentation characteristics, but the inference of some phenotypes is still challenging. In search of further improvements in predicting human eye colour, we conducted whole-exome (enriched in regulome) sequencing of 150 Polish samples to discover new markers. For this, we adopted quantitative characterization of eye colour phenotypes using high-resolution photographic images of the iris in combination with DIAT software analysis. An independent set of 849 samples was used for subsequent predictive modelling. Newly identified candidates and 114 additional literature-based selected SNPs, previously associated with pigmentation, and advanced machine learning algorithms were used. Whole-exome sequencing analysis found 27 previously unreported candidate SNP markers for eye colour. The highest overall prediction accuracies were achieved with LASSO-regularized and BIC-based selected regression models. A new candidate variant, rs2253104, located in the ARFIP2 gene and identified with the HyperLasso method, revealed predictive potential and was included in the best-performing regression models. Advanced machine learning approaches showed a significant increase in sensitivity of intermediate eye colour prediction (up to 39%) compared to 0% obtained for the original IrisPlex model. We identified a new potential predictor of eye colour and evaluated several widely used advanced machine learning algorithms in predictive analysis of this trait. Our results provide useful hints for developing future predictive models for eye colour in forensic and anthropological studies.

Machine Learning-Assisted Sampling of SERS Substrates Improves Data Collection Efficiency

2021 ◽  
pp. 000370282110345
Author(s):  
Tatu Rojalin ◽  
Dexter Antonio ◽  
Ambarish Kulkarni ◽  
Randy P. Carney
Keyword(s):  
Machine Learning ◽  
Data Collection ◽  
Domain Knowledge ◽  
Collection Efficiency ◽  
Point Of Care ◽  
Automated Analysis ◽  
Downstream Processing ◽  
Machine Learning Algorithms ◽  
Label Free ◽  
Expert User

Surface-enhanced Raman scattering (SERS) is a powerful technique for sensitive label-free analysis of chemical and biological samples. While much recent work has established sophisticated automation routines using machine learning and related artificial intelligence methods, these efforts have largely focused on downstream processing (e.g., classification tasks) of previously collected data. While fully automated analysis pipelines are desirable, current progress is limited by cumbersome and manually intensive sample preparation and data collection steps. Specifically, a typical lab-scale SERS experiment requires the user to evaluate the quality and reliability of the measurement (i.e., the spectra) as the data are being collected. This need for expert user-intuition is a major bottleneck that limits applicability of SERS-based diagnostics for point-of-care clinical applications, where trained spectroscopists are likely unavailable. While application-agnostic numerical approaches (e.g., signal-to-noise thresholding) are useful, there is an urgent need to develop algorithms that leverage expert user intuition and domain knowledge to simplify and accelerate data collection steps. To address this challenge, in this work, we introduce a machine learning-assisted method at the acquisition stage. We tested six common algorithms to measure best performance in the context of spectral quality judgment. For adoption into future automation platforms, we developed an open-source python package tailored for rapid expert user annotation to train machine learning algorithms. We expect that this new approach to use machine learning to assist in data acquisition can serve as a useful building block for point-of-care SERS diagnostic platforms.

45 Application of Machine Learning Models to Thermal Burn Patient Outcome Predictions in the Aftermath of a Nuclear Event

2021 ◽  
Vol 42 (Supplement_1) ◽  
pp. S33-S34
Author(s):  
Morgan A Taylor ◽  
Randy D Kearns ◽  
Jeffrey E Carter ◽  
Mark H Ebell ◽  
Curt A Harris
Keyword(s):  
Machine Learning ◽  
Logistic Regression ◽  
Length Of Stay ◽  
Regression Models ◽  
Large Scale ◽  
Prediction Models ◽  
Burn Patients ◽  
Thermal Burn ◽  
Logistic Regression Models ◽  
Burn Patient

Abstract Introduction A nuclear disaster would generate an unprecedented volume of thermal burn patients from the explosion and subsequent mass fires (Figure 1). Prediction models characterizing outcomes for these patients may better equip healthcare providers and other responders to manage large scale nuclear events. Logistic regression models have traditionally been employed to develop prediction scores for mortality of all burn patients. However, other healthcare disciplines have increasingly transitioned to machine learning (ML) models, which are automatically generated and continually improved, potentially increasing predictive accuracy. Preliminary research suggests ML models can predict burn patient mortality more accurately than commonly used prediction scores. The purpose of this study is to examine the efficacy of various ML methods in assessing thermal burn patient mortality and length of stay in burn centers. Methods This retrospective study identified patients with fire/flame burn etiologies in the National Burn Repository between the years 2009 – 2018. Patients were randomly partitioned into a 67%/33% split for training and validation. A random forest model (RF) and an artificial neural network (ANN) were then constructed for each outcome, mortality and length of stay. These models were then compared to logistic regression models and previously developed prediction tools with similar outcomes using a combination of classification and regression metrics. Results During the study period, 82,404 burn patients with a thermal etiology were identified in the analysis. The ANN models will likely tend to overfit the data, which can be resolved by ending the model training early or adding additional regularization parameters. Further exploration of the advantages and limitations of these models is forthcoming as metric analyses become available. Conclusions In this proof-of-concept study, we anticipate that at least one ML model will predict the targeted outcomes of thermal burn patient mortality and length of stay as judged by the fidelity with which it matches the logistic regression analysis. These advancements can then help disaster preparedness programs consider resource limitations during catastrophic incidents resulting in burn injuries.

Multilingual Sentiment Analysis on Short Text Document Using Semi-Supervised Machine Learning

2021 ◽  
Author(s):  
Joshua Lois Cruz Paulino ◽  
Lexter Carl Antoja Almirol ◽  
Jun Marco Cruz Favila ◽  
Kent Alvin Gerald Loria Aquino ◽  
Angelica Hernandez De La Cruz ◽  
...  
Keyword(s):  
Machine Learning ◽  
Sentiment Analysis ◽  
Supervised Machine Learning ◽  
Short Text ◽  
Text Document

Innovative Approach to Build a Scalable Hybrid Model for Prescriptive Maintenance

2021 ◽  
Author(s):  
Richard Büssow ◽  
Bruno Hain ◽  
Ismael Al Nuaimi
Keyword(s):  
Artificial Intelligence ◽  
Machine Learning ◽  
Big Data ◽  
Hybrid Model ◽  
Domain Knowledge ◽  
Spare Parts ◽  
Good Prediction ◽  
First Principle ◽  
Plant Data ◽  
Rotating Equipment

Abstract Objective and Scope Analysis of operational plant data needs experts in order to interpret detected anomalies which are defined as unusual operation points. The next step on the digital transformation journey is to provide actionable insights into the data. Prescriptive Maintenance defines in advance which kind of detailed maintenance and spare parts will be required. This paper details requirements to improve these predictions for rotating equipment and show potential to integrate the outcome into an operational workflow. Methods, Procedures, Process First principle or physics-based modelling provides additional insights into the data, since the results are directly interpretable. However, such approaches are typically assumed to be expensive to build and not scalable. Identification of and focus on the relevant equipment to be modeled in a hybrid model using a combination of first principle physics and machine learning is a successful strategy. The model is trained using a machine learning approach with historic or current real plant data, to predict conditions which have not occurred before. The better the Artificial Intelligence is trained, the better the prediction will be. Results, Observations, Conclusions The general aim when operating a plant is the actual usage of operational data for process and maintenance optimization by advanced analytics. Typically a data-driven central oversight function supports operations and maintenance staff. A major lesson-learned is that the results of a rather simple statistical approach to detect anomalies fall behind the expectations and are too labor intensive. It is a widely spread misinterpretation that being able to deal with big data is sufficient to come up with good prediction quality for Prescriptive Maintenance. What big data companies are normally missing is domain knowledge, especially on plant critical rotating equipment. Without having domain knowledge the relevant input into the model will have shortcomings and hence the same will apply to its predictions. This paper gives an example of a refinery where the described hybrid model has been used. Novel and Additive Information First principle models are typically expensive to build and not scalable. This hybrid model approach, combining first principle physics based models with artificial intelligence and integration into an operational workflow shows a new way forward.

A content spectral-based text representation

2021 ◽  
pp. 1-12
Author(s):  
Melesio Crespo-Sanchez ◽  
Ivan Lopez-Arevalo ◽  
Edwin Aldana-Bobadilla ◽  
Alejandro Molina-Villegas
Keyword(s):  
Machine Learning ◽  
Text Analysis ◽  
Question Answering ◽  
Learning Algorithms ◽  
Machine Learning Algorithms ◽  
Text Representation ◽  
Feature Vectors ◽  
Learning Tasks ◽  
Semantic Component ◽  
Vector Representations

In the last few years, text analysis has grown as a keystone in several domains for solving many real-world problems, such as machine translation, spam detection, and question answering, to mention a few. Many of these tasks can be approached by means of machine learning algorithms. Most of these algorithms take as input a transformation of the text in the form of feature vectors containing an abstraction of the content. Most of recent vector representations focus on the semantic component of text, however, we consider that also taking into account the lexical and syntactic components the abstraction of content could be beneficial for learning tasks. In this work, we propose a content spectral-based text representation applicable to machine learning algorithms for text analysis. This representation integrates the spectra from the lexical, syntactic, and semantic components of text producing an abstract image, which can also be treated by both, text and image learning algorithms. These components came from feature vectors of text. For demonstrating the goodness of our proposal, this was tested on text classification and complexity reading score prediction tasks obtaining promising results.

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