scholarly journals Genomic Analyses of Penicillium Species Have Revealed Patulin and Citrinin Gene Clusters and Novel Loci Involved in Oxylipin Production

2021 ◽  
Vol 7 (9) ◽  
pp. 743
Author(s):  
Guohua Yin ◽  
Hui Zhao ◽  
Kayla K. Pennerman ◽  
Wayne M. Jurick ◽  
Maojie Fu ◽  
...  

Blue mold of apple is caused by several different Penicillium species, among which P. expansum and P. solitum are the most frequently isolated. P. expansum is the most aggressive species, and P. solitum is very weak when infecting apple fruit during storage. In this study, we report complete genomic analyses of three different Penicillium species: P. expansum R21 and P. crustosum NJ1, isolated from stored apple fruit; and P. maximae 113, isolated in 2013 from a flooded home in New Jersey, USA, in the aftermath of Hurricane Sandy. Patulin and citrinin gene cluster analyses explained the lack of patulin production in NJ1 compared to R21 and lack of citrinin production in all three strains. A Drosophila bioassay demonstrated that volatiles emitted by P. solitum SA and P. polonicum RS1 were more toxic than those from P. expansum and P. crustosum strains (R27, R11, R21, G10, and R19). The toxicity was hypothesized to be related to production of eight-carbon oxylipins. Putative lipoxygenase genes were identified in P. expansum and P. maximae strains, but not in P. crustosum. Our data will provide a better understanding of Penicillium spp. complex secondary metabolic capabilities, especially concerning the genetic bases of mycotoxins and toxic VOCs.

PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e6170 ◽  
Author(s):  
Guangxi Wu ◽  
Wayne M. Jurick II ◽  
Franz J. Lichtner ◽  
Hui Peng ◽  
Guohua Yin ◽  
...  

Blue mold is a postharvest rot of pomaceous fruits caused by Penicillium expansum and a number of other Penicillium species. The genome of the highly aggressive P. expansum strain R19 was re-sequenced and analyzed together with the genome of the less aggressive P. solitum strain RS1. Whole genome scale similarities and differences were examined. A phylogenetic analysis of P. expansum, P. solitum, and several closely related Penicillium species revealed that the two pathogens isolated from decayed apple with blue mold symptoms are not each other’s closest relatives. Among a total of 10,560 and 10,672 protein coding sequences respectively, a comparative genomics analysis revealed 41 genes in P. expansum R19 and 43 genes in P. solitum RS1 that are unique to these two species. These genes may be associated with pome fruit–fungal interactions, subsequent decay processes, and mycotoxin accumulation. An intact patulin gene cluster consisting of 15 biosynthetic genes was identified in the patulin producing P. expansum strain R19, while only a remnant, seven-gene cluster was identified in the patulin-deficient P. solitum strain. However, P. solitum contained a large number of additional secondary metabolite gene clusters, indicating that this species has the potential capacity to produce an array of known as well as not-yet-identified products of possible toxicological or biotechnological interest.


2018 ◽  
Author(s):  
Guangxi Wu ◽  
Wayne M Jurick II ◽  
Franz J Lichtner ◽  
Hui Peng ◽  
Guohua Yin ◽  
...  

Blue mold is a postharvest rot of pomaceous fruits caused by Penicillium expansum and a number of other Penicillium species. The genome of the highly aggressive P. expansum strain R19 was re-sequenced and analyzed together with the genome of the less aggressive P. solitum strain RS1. Whole genome scale similarities and differences were examined. A phylogenetic analysis of P. expansum, P. solitum, and several closely related Penicillium species revealed that the two pathogens isolated from decayed apple with blue mold symptoms are not each other’s closest relatives. Among a total of 10,560 and 10,672 protein coding sequences respectively, a comparative genomics analysis revealed 41 genes in P. expansum R19 and 43 genes in P. solitum RS1 that are unique to these two species. These genes may be associated with pome fruit–fungal interactions, subsequent decay processes, and mycotoxin accumulation. An intact patulin gene cluster consisting of 15 biosynthetic genes was identified in the patulin producing P. expansum strain R19, while only a remnant, seven-gene cluster was identified in the patulin-deficient P. solitum strain. However, P. solitum contained a large number of additional secondary metabolite gene clusters indicating that this species has the potential capacity to produce an array of known, as well as not-yet-identified products, of possible toxicological or biotechnological interest.


2018 ◽  
Author(s):  
Guangxi Wu ◽  
Wayne M Jurick II ◽  
Franz J Lichtner ◽  
Hui Peng ◽  
Guohua Yin ◽  
...  

Blue mold is a postharvest rot of pomaceous fruits caused by Penicillium expansum and a number of other Penicillium species. The genome of the highly aggressive P. expansum strain R19 was re-sequenced and analyzed together with the genome of the less aggressive P. solitum strain RS1. Whole genome scale similarities and differences were examined. A phylogenetic analysis of P. expansum, P. solitum, and several closely related Penicillium species revealed that the two pathogens isolated from decayed apple with blue mold symptoms are not each other’s closest relatives. Among a total of 10,560 and 10,672 protein coding sequences respectively, a comparative genomics analysis revealed 41 genes in P. expansum R19 and 43 genes in P. solitum RS1 that are unique to these two species. These genes may be associated with pome fruit–fungal interactions, subsequent decay processes, and mycotoxin accumulation. An intact patulin gene cluster consisting of 15 biosynthetic genes was identified in the patulin producing P. expansum strain R19, while only a remnant, seven-gene cluster was identified in the patulin-deficient P. solitum strain. However, P. solitum contained a large number of additional secondary metabolite gene clusters indicating that this species has the potential capacity to produce an array of known, as well as not-yet-identified products, of possible toxicological or biotechnological interest.


BMC Genomics ◽  
2020 ◽  
Vol 21 (1) ◽  
Author(s):  
Franz J. Lichtner ◽  
Verneta L. Gaskins ◽  
Kerik D. Cox ◽  
Wayne M. Jurick

Plant Disease ◽  
2014 ◽  
Vol 98 (7) ◽  
pp. 1004-1004 ◽  
Author(s):  
H. J. Yan ◽  
V. L. Gaskins ◽  
I. Vico ◽  
Y. G. Luo ◽  
W. M. Jurick

Apples in the United States are stored in low-temperature controlled atmospheres for 9 to 12 months and are highly susceptible to blue mold decay. Penicillium spp. cause significant economic losses worldwide and produce mycotoxins that contaminate processed apple products. Blue mold is managed by a combination of cultural practices and the application of fungicides. In 2004, a new postharvest fungicide, pyrimethanil (Penbotec 400 SC, Janseen PMP, Beerse, Belgium) was registered for use in the United States to control blue mold on pome fruits (1). In this study, 10 blue mold symptomatic ‘Red Delicious’ apples were collected in May 2011 from wooden bins at a commercial facility located in Pennsylvania. These fruit had been treated with Penbotec prior to controlled atmosphere storage. Ten single-spore Penicillium spp. isolates were analyzed for growth using 96-well microtiter plates containing Richards minimal medium amended with a range of technical grade pyrimethanil from 0 to 500 μg/ml. Conidial suspensions adjusted to 1 × 105 conidia/ml were added to three 96-well plates for each experiment; all experiments were repeated three times. Nine resistant isolates had prolific mycelial growth at 500 μg/ml, which is 1,000 times the discriminatory dose that inhibited baseline sensitive P. expansum isolates from Washington State (1). However, one isolate (R13) had limited conidial germination and no mycelial proliferation at 0.5 μg/ml and was categorized as sensitive. One resistant (R22) and one sensitive (R13) isolate were selected on the basis of their different sensitivities to pyrimethanil. Both isolates were identified as P. expansum via conventional PCR using β-tubulin gene-specific primers according to Sholberg et al. (2). Analysis of the 2X consensus amplicon sequences from R13 and R22 matched perfectly (100% identity and 0.0 E value) with other P. expansum accessions in GenBank including JN872743.1, which was isolated from decayed apple fruit from Washington State. To determine if pyrimethanil applied at the labeled rate of 500 μg/ml would control R13 or R22 in vivo, organic ‘Gala’ apple fruit were wounded, inoculated with 50 μl of a conidial suspension (1 × 104 conidia/ml) of either isolate, dipped in Penbotec fungicide or sterile water, and stored at 25°C for 7 days. Twenty fruit composed a replicate within a treatment and the experiment was performed twice. Non-inoculated water-only controls were symptomless, while water-dipped inoculated fruit had 100% decay with mean lesion diameters of 36.8 ± 2.68 mm for R22 and 38.5 ± 2.61 mm for R13. The R22 isolate caused 30% decay with 21.6 ± 5.44 mm lesions when inoculated onto Penbotec-treated apples, while the R13 isolate had 7.5% decay incidence with mean lesion diameters of 23.1 ± 3.41 mm. The results from this study demonstrate that P. expansum pyrimethanil-resistant strains are virulent on Penbotec-treated apple fruit and have the potential to manifest in decay during storage. To the best of our knowledge, this is the first report of pyrimethanil resistance in P. expansum from Pennsylvania, a major apple growing region for the United States. Moreover, these results illuminate the need to develop additional chemical, cultural, and biological methods to control this fungus. References: (1) H. X. Li and C. L. Xiao. Phytopathology 98:427, 2008. (2) P. L. Sholberg et al. Postharvest Biol. Technol. 36:41, 2005.


2018 ◽  

AbstractShared traits between prokaryotes and eukaryotes are helpful in the understanding of the tree of life evolution. In bacteria and eukaryotes, it has been shown a particular organization of tRNA genes as clusters, but this trait has not been explored in archaea domain. Here, based on analyses of complete and draft archaeal genomes, we demonstrated the prevalence of tRNA gene clusters in archaea. tRNA gene cluster was identified at least in three Archaea class, Halobacteria, Methanobacteria and Methanomicrobia from Euryarchaeota supergroup. Genomic analyses also revealed evidence of tRNA gene cluster associated with mobile genetic elements and horizontal gene transfer inter/intra-domain. The presence of tRNA gene clusters in the three domain of life suggests a role of this type of tRNA gene organization in the biology of the living organisms.


Toxins ◽  
2021 ◽  
Vol 13 (10) ◽  
pp. 730
Author(s):  
Wassim Habib ◽  
Mario Masiello ◽  
Hala Chahine-Tsouvalakis ◽  
Zahraa Al Moussawi ◽  
Carine Saab ◽  
...  

The apple is one of the most important fruit tree crops in the Mediterranean region. Lebanon, in particular, is among the top apple producer countries in the Middle East; however, recently, several types of damage, particularly rot symptoms, have been detected on fruits in cold storage. This study aims to identify the causal agents of apple decay in Lebanese post-harvest facilities and characterize a set of 39 representative strains of the toxigenic fungus Penicillium. The results demonstrated that blue mould was the most frequent fungal disease associated with apples showing symptoms of decay after 3–4 months of storage at 0 °C, with an average frequency of 76.5% and 80.6% on cv. Red and cv. Golden Delicious apples, respectively. The morphological identification and phylogenetic analysis of benA gene showed that most Penicillium strains (87.2%) belong to P. expansum species whereas the remaining strains (12.8%) belong to P. solitum. Furthermore, 67.7% of P. expansum strains produced patulin when grown on apple puree for 14 days at 25 °C with values ranging from 10.7 mg kg−1 to 125.9 mg kg−1, whereas all P. solitum did not produce the mycotoxin. This study highlights the presence of Penicillium spp. and their related mycotoxin risk during apple storage and calls for the implementation of proper measures to decrease the risk of mycotoxin contamination of apple fruit products.


Plant Disease ◽  
2011 ◽  
Vol 95 (1) ◽  
pp. 72-72 ◽  
Author(s):  
C. L. Xiao ◽  
Y. K. Kim ◽  
R. J. Boal

Blue mold caused by Penicillium expansum is a major postharvest fruit rot disease of apples (Malus domestica) worldwide. Pyrimethanil was registered in late 2004 in the United States for postharvest use on apples. Since then, pyrimethanil has been increasingly used in Washington State as a postharvest drench treatment for control of blue mold and other postharvest diseases in apples. Baseline sensitivity to pyrimethanil in P. expansum populations from apples in Washington State has been established and all isolates in the baseline population were sensitive to pyrimethanil (1). To monitor resistance to pyrimethanil in P. expansum populations, blue mold-like decayed apple fruit were sampled from May to August 2009 from the fruit that had been drenched with pyrimethanil prior to storage from fruit packinghouses. Isolation of Penicillium species from decayed fruit was attempted. Isolates of Penicillium species were identified to species according to the descriptions by Pitt (2). In total, 186 P. expansum isolates were collected and tested for resistance to pyrimethanil in a conidial germination assay on an agar medium amended with pyrimethanil at the discriminatory concentration of 0.5 μg ml–1 (1). Isolates that were able to germinate were considered resistant to pyrimethanil. Of the 186 isolates tested, one was resistant to pyrimethanil. EC50 (the effective concentration that inhibits fungal growth by 50% relative to the control) of pyrimethanil for the resistant isolate was determined according to a method described previously (1) and the test was done twice. EC50 values of pyrimethanil on mycelial growth and conidial germination for the resistant isolate were 9.9 and 3.1 μg/ml, respectively, which were 7.4-fold and 16.5-fold higher than the means of the baseline population (1). To evaluate whether pyrimethanil at label rate is still able to control this resistant isolate, ‘Fuji’ apples were wounded, inoculated with conidial suspensions (1 × 104 conidia ml–1) of either the resistant isolate or a pyrimethanil-sensitive isolate, treated with either pyrimethanil or sterile water as controls, and stored at 20°C for 10 days following a method described previously (1). There were four 20-fruit replicates for each treatment. The experiment was performed twice. All inoculated fruit in the nontreated controls were decayed. Pyrimethanil applied at label rate completely controlled blue mold incited by a pyrimethanil-sensitive isolate, but 75% of the fruit that were inoculated with the resistant isolate and treated with pyrimethanil developed blue mold. To our knowledge, this is the first report of pyrimethanil resistance in P. expansum from decayed apple fruit collected from commercial packing houses. The pyrimethanil-resistant isolate was obtained from a packing house in which pyrimethanil had been used as a postharvest drench treatment in each of four consecutive years, suggesting that pyrimethanil-resistant individuals are emerging in P. expansum populations in Washington State after repeated use of pyrimethanil. Our results also indicate that pyrimethanil resistance in P. expansum reported in this study can result in failure of blue mold control in apples with pyrimethanil. References: (1) H. X. Li and C. L. Xiao. Postharvest Biol. Technol. 47:239, 2008. (2) J. I. Pitt. A Laboratory Guide to Common Penicillium species. Food Science Australia, North Ryde NSW, Australia, 2002.


Data Series ◽  
10.3133/ds887 ◽  
2014 ◽  
Author(s):  
C. Wayne Wright ◽  
Rodolfo J. Troche ◽  
Christine J. Kranenburg ◽  
Emily S. Klipp ◽  
Xan Fredericks ◽  
...  

Data Series ◽  
10.3133/ds767 ◽  
2014 ◽  
Author(s):  
C. Wayne Wright ◽  
Xan Fredericks ◽  
Rodolfo J. Troche ◽  
Emily S. Klipp ◽  
Christine J. Kranenburg ◽  
...  

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