scholarly journals Local Tree Diversity Suppresses Foliar Fungal Infestation and Decreases Morphological but Not Molecular Richness in a Young Subtropical Forest

2021 ◽  
Vol 7 (3) ◽  
pp. 173
Author(s):  
Mariem Saadani ◽  
Lydia Hönig ◽  
Steffen Bien ◽  
Michael Koehler ◽  
Gemma Rutten ◽  
...  
Keyword(s):  
Host Species ◽  
Fungal Pathogens ◽  
Fungal Species ◽  
Tree Diversity ◽  
Local Species Richness ◽  
Tree Community ◽  
Diversity Effect ◽  
Local Species ◽  
High Throughput Dna Sequencing ◽  
Species Performance

Leaf fungal pathogens alter their host species’ performance and, thus, changes in fungal species composition can translate into effects at the tree community scale. Conversely, the functional diversity of tree species in a host tree’s local neighbourhood can affect the host’s foliar fungal infestation. Therefore, understanding the factors that affect fungal infestations is important to advance our understanding of biodiversity-ecosystem functioning (BEF) relationships. Here we make use of the largest BEF tree experiment worldwide, the BEF-China experiment, where we selected tree host species with different neighbour species. Identifying fungal taxa by microscopy and by high-throughput DNA sequencing techniques based on the internal transcribed spacer (ITS) rDNA region, we analysed the fungal richness and infestation rates of our target trees as a function of local species richness. Based on the visual microscopic assessment, we found that a higher tree diversity reduced fungal richness and host-specific fungal infestation in the host’s local neighbourhood, while molecular fungal richness was unaffected. This diversity effect was mainly explained by the decrease in host proportion. Thus, the dilution of host species in the local neighbourhood was the primary mechanism in reducing the fungal disease severity. Overall, our study suggests that diverse forests will suffer less from foliar fungal diseases compared to those with lower diversity.

scholarly journals Post-translational regulation of autophagy is involved in intra-microbiome suppression of fungal pathogens

Microbiome ◽  
2021 ◽  
Vol 9 (1) ◽  
Author(s):  
Jing Wang ◽  
Chaoyun Xu ◽  
Qiming Sun ◽  
Jinrong Xu ◽  
Yunrong Chai ◽  
...  
Keyword(s):  
Translational Regulation ◽  
Fungal Pathogens ◽  
Fungal Growth ◽  
Fungal Species ◽  
26S Proteasome ◽  
Healthy Plant ◽  
Autophagy Induction ◽  
Histone Acetyltransferase Gcn5 ◽  
Plant Microbiota ◽  
Autophagic Process

Abstract Background Microbiome interactions are important determinants for ecosystem functioning, stability, and health. In previous studies, it was often observed that bacteria suppress potentially pathogenic fungal species that are part of the same plant microbiota; however, the underlying microbe-microbe interplay remains mostly elusive. Here, we explored antagonistic interactions of the fungus Fusarium graminearum and bacterium Streptomyces hygroscopicus at the molecular level. Both are ubiquitous members of the healthy wheat microbiota; under dysbiosis, the fungus causes devastating diseases. Results In co-cultures, we found that Streptomyces alters the fungal acetylome leading to substantial induction of fungal autophagy. The bacterium secrets rapamycin to inactivate the target of rapamycin (TOR), which subsequently promotes the degradation of the fungal histone acetyltransferase Gcn5 through the 26S proteasome. Gcn5 negatively regulates fungal autophagy by acetylating the autophagy-related protein Atg8 at the lysine site K13 and blocking cellular relocalization of Atg8. Thus, degradation of Gcn5 triggered by rapamycin was found to reduce Atg8 acetylation, resulting in autophagy induction in F. graminearum. Conclusions Autophagy homeostasis plays an essential role in fungal growth and competition, as well as for virulence. Our work reveals a novel post-translational regulation of autophagy initiated by a bacterial antibiotic. Rapamycin was shown to be a powerful modulator of bacteria–fungi interactions with potential importance in explaining microbial homeostasis in healthy plant microbiomes. The autophagic process provides novel possibilities and targets to biologically control pathogens.

Annual fires reduce local species richness but do not homogenize the composition of savanna woody species

Flora ◽  
2021 ◽  
pp. 151868
Author(s):  
Karlo G. Guidoni-Martins ◽  
Leandro Maracahipes ◽  
Adriano S. Melo ◽  
Marcus V. Cianciaruso
Keyword(s):  
Species Richness ◽  
Woody Species ◽  
Local Species Richness ◽  
Local Species

scholarly journals Mitotic Recombination and Adaptive Genomic Changes in Human Pathogenic Fungi

Genes ◽  
2019 ◽  
Vol 10 (11) ◽  
pp. 901 ◽  
Author(s):  
Asiya Gusa ◽  
Sue Jinks-Robertson
Keyword(s):  
Fungal Pathogens ◽  
Repetitive Sequences ◽  
Pathogenic Fungi ◽  
Genetic Alterations ◽  
Fungal Species ◽  
Chronic Infections ◽  
Yeast Saccharomyces Cerevisiae ◽  
Genomic Changes ◽  
Break Site ◽  
Repair Mechanisms

Genome rearrangements and ploidy alterations are important for adaptive change in the pathogenic fungal species Candida and Cryptococcus, which propagate primarily through clonal, asexual reproduction. These changes can occur during mitotic growth and lead to enhanced virulence, drug resistance, and persistence in chronic infections. Examples of microevolution during the course of infection were described in both human infections and mouse models. Recent discoveries defining the role of sexual, parasexual, and unisexual cycles in the evolution of these pathogenic fungi further expanded our understanding of the diversity found in and between species. During mitotic growth, damage to DNA in the form of double-strand breaks (DSBs) is repaired, and genome integrity is restored by the homologous recombination and non-homologous end-joining pathways. In addition to faithful repair, these pathways can introduce minor sequence alterations at the break site or lead to more extensive genetic alterations that include loss of heterozygosity, inversions, duplications, deletions, and translocations. In particular, the prevalence of repetitive sequences in fungal genomes provides opportunities for structural rearrangements to be generated by non-allelic (ectopic) recombination. In this review, we describe DSB repair mechanisms and the types of resulting genome alterations that were documented in the model yeast Saccharomyces cerevisiae. The relevance of similar recombination events to stress- and drug-related adaptations and in generating species diversity are discussed for the human fungal pathogens Candida albicans and Cryptococcus neoformans.

scholarly journals Arthropod community structure in pastures of an island archipelago (Azores): looking for local–regional species richness patterns at fine-scales

2004 ◽  
Vol 94 (2) ◽  
pp. 111-121 ◽  
Author(s):  
P.A.V. Borges ◽  
V.K. Brown
Keyword(s):  
Species Richness ◽  
Regional Scale ◽  
Local Scale ◽  
Local Species Richness ◽  
Β Diversity ◽  
Arthropod Species ◽  
Α Diversity ◽  
Local Species ◽  
Richness Patterns

AbstractThe arthropod species richness of pastures in three Azorean islands was used to examine the relationship between local and regional species richness over two years. Two groups of arthropods, spiders and sucking insects, representing two functionally different but common groups of pasture invertebrates were investigated. The local–regional species richness relationship was assessed over relatively fine scales: quadrats (= local scale) and within pastures (= regional scale). Mean plot species richness was used as a measure of local species richness (= α diversity) and regional species richness was estimated at the pasture level (= γ diversity) with the ‘first-order-Jackknife’ estimator. Three related issues were addressed: (i) the role of estimated regional species richness and variables operating at the local scale (vegetation structure and diversity) in determining local species richness; (ii) quantification of the relative contributions of α and β diversity to regional diversity using additive partitioning; and (iii) the occurrence of consistent patterns in different years by analysing independently between-year data. Species assemblages of spiders were saturated at the local scale (similar local species richness and increasing β-diversity in richer regions) and were more dependent on vegetational structure than regional species richness. Sucking insect herbivores, by contrast, exhibited a linear relationship between local and regional species richness, consistent with the proportional sampling model. The patterns were consistent between years. These results imply that for spiders local processes are important, with assemblages in a particular patch being constrained by habitat structure. In contrast, for sucking insects, local processes may be insignificant in structuring communities.

Amphibians of the Kayan Mentarang National Park (East Kalimantan, Indonesia): estimating overall and local species richness

2004 ◽  
Vol 17 (1) ◽  
pp. 1-13 ◽  
Author(s):  
M. Veith ◽  
S. Wulffraat ◽  
J. Kosuch ◽  
G. Hallmann ◽  
H.-W. Henkel ◽  
...  
Keyword(s):  
Species Richness ◽  
National Park ◽  
East Kalimantan ◽  
Local Species Richness ◽  
Local Species

scholarly journals Characterization and comparison of poorly known moth communities through DNA barcoding in two Afrotropical environments in Gabon

Genome ◽  
2019 ◽  
Vol 62 (3) ◽  
pp. 96-107 ◽  
Author(s):  
Sylvain Delabye ◽  
Rodolphe Rougerie ◽  
Sandrine Bayendi ◽  
Myrianne Andeime-Eyene ◽  
Evgeny V. Zakharov ◽  
...  
Keyword(s):  
Dna Barcoding ◽  
Insect Communities ◽  
Biodiversity Research ◽  
Local Species Richness ◽  
Biodiversity Knowledge ◽  
Formidable Challenge ◽  
Entire Country ◽  
The Status ◽  
Local Species ◽  
Taxonomic Approach

Biodiversity research in tropical ecosystems—popularized as the most biodiverse habitats on Earth—often neglects invertebrates, yet invertebrates represent the bulk of local species richness. Insect communities in particular remain strongly impeded by both Linnaean and Wallacean shortfalls, and identifying species often remains a formidable challenge inhibiting the use of these organisms as indicators for ecological and conservation studies. Here we use DNA barcoding as an alternative to the traditional taxonomic approach for characterizing and comparing the diversity of moth communities in two different ecosystems in Gabon. Though sampling remains very incomplete, as evidenced by the high proportion (59%) of species represented by singletons, our results reveal an outstanding diversity. With about 3500 specimens sequenced and representing 1385 BINs (Barcode Index Numbers, used as a proxy to species) in 23 families, the diversity of moths in the two sites sampled is higher than the current number of species listed for the entire country, highlighting the huge gap in biodiversity knowledge for this country. Both seasonal and spatial turnovers are strikingly high (18.3% of BINs shared between seasons, and 13.3% between sites) and draw attention to the need to account for these when running regional surveys. Our results also highlight the richness and singularity of savannah environments and emphasize the status of Central African ecosystems as hotspots of biodiversity.

scholarly journals Long-term species richness-abundance dynamics in relation to species departures and arrivals in wintering urban bird assemblages

2019 ◽  
Vol 5 (1) ◽  
pp. 1-10 ◽  
Author(s):  
Jukka Suhonen ◽  
Jukka Jokimäki
Keyword(s):  
Species Richness ◽  
Bird Species ◽  
Total Abundance ◽  
Bird Species Richness ◽  
Abundance Dynamics ◽  
Local Species Richness ◽  
Local Species ◽  
The Mean ◽  
Urban Bird ◽  
Number Of Individuals

Abstract Temporal dynamics of local assemblages depend on the species richness and the total abundance of individuals as well as local departure and arrival rates of species. We used urban bird survey data collected from the same 31 study plots and methods during three winters (1991–1992; 1999–2000 and 2009–2010) to analyze the temporal relationship between bird species richness and total number of individuals (abundance). We also evaluated local departures and arrivals of species in each assemblage. In total, 13,812 individuals of 35 species were detected. The temporal variation in bird species richness followed the variation in the total number of individuals. The numbers of local departure and arrival events were similar. Also, the mean number of individuals of the recently arrived species (8.6) was almost the same as the mean number of individuals of the departed species (8.2). Risk of species departure was inversely related to number of individuals. Local species richness increased by one species when the total abundance of individuals increased by around 125 individuals and vice versa. Our results highlight the important role of local population departures and arrivals in determining the local species richness-abundance dynamics in human-dominated landscapes. Local species richness patterns depend on the total number of individuals as well as both the departure-arrival dynamics of individual species as well as the dynamics of all the species together. Our results support the more individuals hypothesis, which suggests that individual-rich assemblages have more species.

scholarly journals Three points of consideration before testing the effect of patch connectivity on local species richness: patch delineation, scaling and variability of metrics

2019 ◽  
Author(s):  
Fabien Laroche ◽  
Manon Balbi ◽  
Théophile Grébert ◽  
Franck Jabot ◽  
Frédéric Archaux
Keyword(s):  
Species Richness ◽  
Empirical Studies ◽  
Structural Connectivity ◽  
Dispersal Limitation ◽  
Dispersal Distance ◽  
Habitat Amount ◽  
Local Species Richness ◽  
Theory Of Island Biogeography ◽  
Local Species ◽  
Patch Connectivity

AbstractThe Theory of Island Biogeography (TIB) promoted the idea that species richness within sites depends on site connectivity, i.e. its connection with surrounding potential sources of immigrants. TIB has been extended to a wide array of fragmented ecosystems, beyond archipelagoes, surfing on the analogy between habitat patches and islands and on the patch-matrix framework. However, patch connectivity often little contributes to explaining species richness in empirical studies. Before interpreting this trend as questioning the broad applicability of TIB principles, one first needs a clear identification of methods and contexts where strong effects of patch structural connectivity are likely to occur. Here, we use spatially explicit simulations of neutral metacommunities to show that patch connectivity effect on local species richness is maximized under a set of specific conditions: (i) patch delineation should be fine enough to ensure that no dispersal limitation occurs within patches, (ii) patch connectivity indices should be scaled according to target organisms’ dispersal distance and (iii) the habitat amount around sampled sites (within a distance adapted to organisms’ dispersal) should be highly variable. When those three criteria are met, the absence of an effect of connectivity on species richness should be interpreted as contradicting TIB hypotheses

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