scholarly journals The Relationship between Fungal Diversity and Invasibility of a Foliar Niche—The Case of Ash Dieback

2020 ◽  
Vol 6 (3) ◽  
pp. 150
Author(s):  
Ahto Agan ◽  
Rein Drenkhan ◽  
Kalev Adamson ◽  
Leho Tedersoo ◽  
Halvor Solheim ◽  
...  
Keyword(s):  
Niche Partitioning ◽  
Carbon Utilization ◽  
Dimorphic Fungus ◽  
Dna Amount ◽  
Ash Dieback ◽  
Hymenoscyphus Fraxineus ◽  
Leaf Tissues ◽  
Ecological Success ◽  
Carbon Utilization Profiles ◽  
European Ash

European ash (Fraxinus excelsior) is threatened by the invasive ascomycete Hymenoscyphus fraxineus originating from Asia. Ash leaf tissues serve as a route for shoot infection but also as a sporulation substrate for this pathogen. Knowledge of the leaf niche partitioning by indigenous fungi and H. fraxineus is needed to understand the fungal community receptiveness to the invasion. We subjected DNA extracted from unwashed and washed leaflets of healthy and diseased European ash to PacBio sequencing of the fungal ITS1-5.8S-ITS2 rDNA region. Leaflets from co-inhabiting rowan trees (Sorbus aucuparia) served as a reference. The overlap in leaflet mycobiomes between ash and rowan was remarkably high, but unlike in rowan, in ash leaflets the sequence read proportion, and the qPCR-based DNA amount estimates of H. fraxineus increased vigorously towards autumn, concomitant with a significant decline in overall fungal richness. The niche of ash and rowan leaves was dominated by epiphytic propagules (Vishniacozyma yeasts, the dimorphic fungus Aureobasidion pullulans and the dematiaceous hyphomycete Cladosporium ramotenellum and H. fraxineus), and endophytic thalli of biotrophs (Phyllactinia and Taphrina species), the indigenous necrotroph Venturia fraxini and H. fraxineus. Mycobiome comparison between healthy and symptomatic European ash leaflets revealed no significant differences in relative abundance of H. fraxineus, but A. pullulans was more prevalent in symptomatic trees. The impacts of host specificity, spatiotemporal niche partitioning, species carbon utilization profiles and life cycle traits are discussed to understand the ecological success of H. fraxineus in Europe. Further, the inherent limitations of different experimental approaches in the profiling of foliicolous fungi are addressed.

scholarly journals Estimating mortality rates of European ash ( Fraxinus excelsior ) under the ash dieback ( Hymenoscyphus fraxineus ) epidemic

2018 ◽  
Vol 1 (1) ◽  
pp. 48-58 ◽  
Author(s):  
Tim L. R. Coker ◽  
Jiří Rozsypálek ◽  
Anne Edwards ◽  
Tony P. Harwood ◽  
Louise Butfoy ◽  
...  
Keyword(s):  
Mortality Rates ◽  
Fraxinus Excelsior ◽  
Ash Dieback ◽  
Hymenoscyphus Fraxineus ◽  
European Ash

First report of Diplodia fraxini and Diplodia subglobosa causing canker and dieback of Fraxinus excelsior in Slovenia

Plant Disease ◽  
2021 ◽  
Author(s):  
Benedetto T. Linaldeddu ◽  
Carlo Bregant ◽  
Lucio Montecchio ◽  
Ana Brglez ◽  
Barbara Piškur ◽  
...  
Keyword(s):  
Sequence Data ◽  
Fungal Species ◽  
Pathogenicity Test ◽  
Limited Information ◽  
Internal Transcribed Spacer Region ◽  
Ash Dieback ◽  
Fungal Isolation ◽  
Hymenoscyphus Fraxineus ◽  
Botryosphaeriaceae Species ◽  
European Ash

Over the last decades the vitality and productivity of European ash trees in Slovenia has been seriously impacted by the onset of canker and dieback disease symptoms on young and old trees, primarily identified as ash dieback caused by Hymenoscyphus fraxineus. Given the limited information available about the aetiology of this emerging disease, a study was carried out to isolate, identify and characterize the fungal species involved in the observed ash symptoms. Field surveys were conducted in five forest sites where 50 symptomatic branch samples were collected. All samples were inspected and used for fungal isolation. Based on morphology, colony appearance and DNA sequence data of the internal transcribed spacer region (ITS), 125 fungal colonies belonging to five species were isolated and identified. Only a few symptomatic ash samples yielded colonies of H. fraxineus, whereas Botryosphaeriaceae species were isolated with a high frequency, with Diplodia fraxini as the dominant species. A pathogenicity test proved that all isolated species were pathogenic on European ash, causing bark lesions and wood discoloration. All Botryosphaeriaceae species isolated in this study are reported for the first time on European ash in Slovenia.

scholarly journals Decline of Fraxinus excelsior L. in parks of Saint Petersburg: Who is to blame – Hymenoscyphus fraxineus or Diplodia spp.?

2020 ◽  
Vol 73 (1) ◽  
pp. 43-51
Author(s):  
Dmitrii A. Shabunin ◽  
Andrey V. Selikhovkin ◽  
Elena Yu. Varentsova ◽  
Dmitry L. Musolin
Keyword(s):  
Light Microscopy ◽  
Fraxinus Excelsior ◽  
Ash Dieback ◽  
Saint Petersburg ◽  
Hymenoscyphus Fraxineus ◽  
Ash Trees ◽  
Fallen Leaves ◽  
European Ash

Abstract The weakening and decline of European ash Fraxinus excelsior L. and other ash species have been recorded at different locations in the suburbs of Saint Petersburg, Russia. During the summer of 2019 and spring of 2020, samples from leaves, petioles, and shoots were collected from the weakened and declining ash trees in three parks in Pushkin and Gatchina and maintained in humid chambers to induce the fructification of fungi. In total, 30 taxa of micromycetes belonging to 23 genera were identified using methods of light microscopy. Hymenoscyphus fraxineus, a putative agent of ash dieback, was not recorded in the samples collected in the crowns of trees, but only on the petioles of the fallen leaves in spring. Out of all the micromycetes recorded, only coelomycetes from the genus Diplodia Fr. (in particular, D. mutila) can damage the branches of ash trees and, thus, be considered pathogenic. It is likely that H. fraxineus opens “the entry of infection” and Diplodia spp. cause the major weakening and decline of branches. The data obtained can significantly change our understanding of the causes of ash dieback and possible methods of ash stand preservation. The reason for the low pathogenicity and activity of H. fraxineus, as well as the possible role of ascomycetes Diplodia spp. in the dieback of ash stands requires further research.

scholarly journals Transformation of European Ash (Fraxinus excelsior L.) Callus as a Starting Point for Understanding the Molecular Basis of Ash Dieback

Plants ◽  
2021 ◽  
Vol 10 (11) ◽  
pp. 2524
Author(s):  
Anna Hebda ◽  
Aleksandra Liszka ◽  
Piotr Zgłobicki ◽  
Katarzyna Nawrot-Chorabik ◽  
Jan J. Lyczakowski
Keyword(s):  
Molecular Basis ◽  
Selection Process ◽  
Pathogenic Fungus ◽  
Fraxinus Excelsior ◽  
Reporter System ◽  
Ash Dieback ◽  
Gus Reporter ◽  
Hymenoscyphus Fraxineus ◽  
Starting Point ◽  
European Ash

The population of European ash (Fraxinus excelsior L.) is currently facing the risk of collapse, mainly due to ash dieback, a disease caused by a pathogenic fungus, Hymenoscyphus fraxineus. To facilitate studies into the molecular basis of ash dieback and design breeding strategies for a generation of resistant trees, it is necessary to develop tools enabling the study of gene function in F. excelsior. Despite this, a method for the genetic engineering of F. excelsior is still missing. Here, we report the first successful genetic transformation of F. excelsior callus and a selection process enabling the formation of stable transgenic callus lines. The protocol relies on the use of Agrobacterium tumefaciens to transform callus tissue derived from embryos of F. excelsior. In our experiments, we used the β-glucuronidase (GUS) reporter system to demonstrate the transformation of callus cells and performed RT-PCR experiments to confirm the stable expression of the transgene. Since ash dieback threatens the long-term stability of many native F. excelsior populations, we hope that the transformation techniques described in this manuscript will facilitate rapid progress in uncovering the molecular basis of the disease and the validation of gene targets previously proposed to be linked to the resistance of trees to H. fraxineus pathogenicity.

scholarly journals European-wide forest monitoring substantiate the neccessity for a joint conservation strategy to rescue European ash species (Fraxinus spp.)

2021 ◽  
Author(s):  
Jan-Peter George ◽  
Tanja GM Sanders ◽  
Volkmar Timmermann ◽  
Nenad Potocic ◽  
Mait Lang
Keyword(s):  
Population Decline ◽  
Forest Monitoring ◽  
Conservation Strategy ◽  
Disease Spread ◽  
Ash Dieback ◽  
North East ◽  
Extreme Precipitation Events ◽  
Hymenoscyphus Fraxineus ◽  
Crown Defoliation ◽  
European Ash

European ash (Fraxinus excelsior) and narrow-leafed ash (F. angustifolia) are keystone forest tree species in Europe with a broad ecological amplitude and significant economic importance. Besides global warming both species are currently under significant thread by an invasive fungal pathogen that has been progressively spreading throughout the continent for almost three decades. Ash dieback caused by the invasive ascomycete Hymenoscyphus fraxineus is capable of damaging ash trees of all age classes and often leads to the ultimate death of a tree after years of progressively developing crown defoliation. While studies at national and regional level already suggested rapid decline of ash populations as a result of ash dieback, a comprehensive survey at European level with harmonized crown assessment data across countries could shed more light into the population decline from a pan-European perspective and could also pave the way for a new conservation strategy beyond national boarders. Here, we present data from the ICP Forests Level I crown condition monitoring including 27 countries, covering the timespan from 1987-2020. In total, 407 survey plots randomly distributed across these countries were analyzed resulting in >36,000 individual observations. We found a substantial increase in defoliation and mortality over time indicating that crown defoliation has almost doubled during the last three decades. Hotspots of mortality are currently situated in southern Scandinavia and north-eastern Europe, well corresponding to the fact that the disease spread fast from north-east to north-west. Overall survival probability after nearly 30 years of infection has already reached a critical value of 0.51, but with large differences among regions (0.00-0.907). Both a Cox proportional hazard model as well as an Aalen additive regression model strongly suggest that survival of ash is significantly lower in locations with excessive water regime and which experienced more extreme precipitation events during the last two decades. Our results underpin the necessity for fast governmental acting and joint rescue efforts beyond national boarders since overall mean defoliation will likely reach 50% as early as 2030 as suggested by time series forecasting . We strongly recommend to develop a pan-European conservation strategy before the decline will reach its tipping point resulting into non-reversible loss of diversity in the European forest landscape.

scholarly journals Mycobiome of Fraxinus excelsior With Different Phenotypic Susceptibility to Ash Dieback

2021 ◽  
Vol 4 ◽  
Author(s):  
Marta Agostinelli ◽  
Diem Nguyen ◽  
Johanna Witzell ◽  
Michelle Cleary
Keyword(s):  
Large Scale ◽  
Population Decline ◽  
Keystone Species ◽  
Fungal Species ◽  
Fraxinus Excelsior ◽  
Fungal Communities ◽  
Ash Dieback ◽  
Hymenoscyphus Fraxineus ◽  
Ash Trees ◽  
European Ash

For the last two decades, large-scale population decline of European ash (Fraxinus excelsior) has occurred in Europe because of the introduction of the alien fungal pathogen, Hymenoscyphus fraxineus, from East Asia. Since European ash is a keystone species having critical importance for biodiversity, and only a small percentage of the ash population appears to show some tolerance against the pathogen, the loss of ash trees means that other associated organisms, especially those with high or obligate associations to ash, are at risk of further species declines. In this study, we used high throughput DNA sequencing and multivariate analysis to characterize: (i) the mycobiome in aerial tissues (i.e., leaf, bark, and xylem) of ash trees showing different phenotypic response to ash dieback, (ii) the temporal variation in fungal communities across the growing season, and (iii) the similarity in fungal community structure between ash and other common trees species that may serve as an ecological niche substitute for ash microfungi. Results showed that fungal communities differed among the three tissue types, susceptibility classes, in time and between sites. Trophic analysis of functional groups using the FUNGuild tool indicated a higher presence of pathotrophic fungi in leaves than in bark and xylem. The share of pathotrophic fungi increased along a gradient of low to high disease susceptibility in both bark and xylem tissue, while the proportion of symbiotrophic fungi correspondingly decreased in both tissue types. Neighboring, alternative host trees did not share all the fungal species found in ash, however, most microfungi uniquely associated to ash in this study are generalists and not strictly host specific. The progressive disappearance of ash trees on the landscape imposes a high risk for extinction of Red-listed macrofungal species, and breeding for resistance against ash dieback should help sustain important biodiversity associated to ash. Microfungal diversity though may be less prone to such demise since most ash-associated endophytes appear to occur on a broad range of host species.

scholarly journals Friend or foe? Biological and ecological traits of the European ash dieback pathogen Hymenoscyphus fraxineus in its native environment

2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Michelle Cleary ◽  
Diem Nguyen ◽  
Diana Marčiulynienė ◽  
Anna Berlin ◽  
Rimvys Vasaitis ◽  
...  
Keyword(s):  
Ecological Traits ◽  
Ash Dieback ◽  
Hymenoscyphus Fraxineus ◽  
European Ash

scholarly journals Situation and perspectives of European ash (Fraxinus spp.) in Ukraine: focus on eastern border

2019 ◽  
Vol 25 (2) ◽  
pp. 193-202
Author(s):  
Kateryna V Davydenko ◽  
Valentyna Borysova ◽  
Olena Shcherbak ◽  
Yevhen Kryshtop ◽  
Valentyna Meshkova
Keyword(s):  
Pathogenic Fungus ◽  
Total Mortality ◽  
Fraxinus Excelsior ◽  
Bacterial Disease ◽  
Eastern Region ◽  
Ash Dieback ◽  
Epicormic Shoots ◽  
Hymenoscyphus Fraxineus ◽  
Ash Trees ◽  
European Ash

The health condition of European ash (Fraxinus excelsior) stands in Ukraine has become worse since 2006. Firstly, in 2011 an alien invasive pathogenic fungus Hymenoscyphus fraxineus was identified in the eastern part of the country and, subsequently, its presence was confirmed in the western and central parts. The aims of our research were to evaluate the health of ash trees and identify the main causes of ash decline in different regions of Ukraine with emphasis on ash dieback and its association with collar rots.    Results showed that since 2013 the number of trees with ash dieback symptoms has been gradually increasing, reaching up to 92 % in 2018. Total mortality due to ash dieback was up to 9 % in 2018. Disease intensity remains high in northern and central Ukraine comparing with the east. Branch dieback, collar rots, epicormic shoots and bacterial disease of ash occurred more often in the eastern region, some symptoms were observed simultaneously. Ash bark beetle galleries, as well as foliage browsing insects, were found mostly in weakened and/or dying trees.    It was indicated that collar rots significantly increase the mortality of ash trees. Armillaria spp. fungi were found to be frequently associated with ash dieback on living stems and fallen trees in 2017, causing high rates of mortality in the northern and central regions. For further ash conservation and breeding programmes, resistant trees in severely damaged regions should be selected to preserve genetic diversity in ash populations.                                                       Keywords: Fraxinus excelsior, ash dieback, collar rot, bacterial disease, epicormic shoots, Hymenoscyphus fraxineus, Armillaria spp.

scholarly journals Genomic basis of European ash tree resistance to ash dieback fungus

2019 ◽  
Author(s):  
Jonathan J. Stocks ◽  
Carey L. Metheringham ◽  
William Plumb ◽  
Steve J. Lee ◽  
Laura J. Kelly ◽  
...  
Keyword(s):  
Sequence Data ◽  
Seed Source ◽  
Source Zone ◽  
Whole Genome Sequence ◽  
Ash Dieback ◽  
Hymenoscyphus Fraxineus ◽  
A Genome ◽  
Ash Trees ◽  
Gp Model ◽  
European Ash

SummaryPopulations of European ash trees (Fraxinus excelsior) are being devastated by the invasive alien fungus Hymenoscyphus fraxineus, which causes ash dieback (ADB). We sequenced whole genomic DNA from 1250 ash trees in 31 DNA pools, each pool containing trees with the same ADB damage status in a screening trial and from the same seed-source zone. A genome-wide association study (GWAS) identified 3,149 single nucleotide polymorphisms (SNPs) associated with low versus high ADB damage. Sixty-one of the 203 most significant SNPs were in, or close to, genes with putative homologs already known to be involved in pathogen responses in other plant species. We also used the pooled sequence data to train a genomic prediction (GP) model, cross-validated using individual whole genome sequence data generated for 75 healthy and 75 damaged trees from a single seed source. Using the top 30% of our genomic estimated breeding values from 200 SNPs, we could predict tree health with over 90% accuracy. We infer that ash dieback resistance in F. excelsior is a polygenic trait that should respond well to both natural selection and breeding, which could be accelerated using GP.

scholarly journals Ash dieback and contributing factors of forest weakening in provenance tests in the Sumy region

2021 ◽  
Vol 67 (2) ◽  
pp. 113-121
Author(s):  
Valentyna Meshkova ◽  
Viacheslav Samoday ◽  
Kateryna Davydenko
Keyword(s):  
Condition Index ◽  
Health Condition ◽  
Fraxinus Excelsior ◽  
Forest Steppe ◽  
Special Focus ◽  
Contributing Factors ◽  
Ash Dieback ◽  
Collar Rot ◽  
Hymenoscyphus Fraxineus ◽  
European Ash

Abstract The aim of this study was to evaluate the health condition of Fraxinus excelsior L. in provenance tests, with special focus on ash dieback (ADB), but taking into account also other causes of its decline. The research was carried out in the provenance tests of F. excelsior in the forest-steppe part of the Sumy region. ADB symptoms were revealed in all provenance tests. For 2012–2019 the health condition index, ADB incidence and severity increased for all provenances except the Steppe. Collar rot was present in all ash provenances. Fungi species were isolated from the stem parts of ash at all provenances. Hymenoscyphus fraxineus induced longest necrotic lesions following wound inoculation of stems of 7–10-years-old plants of European ash in the forest while inoculation with both Cytospora sp. and Diplodia sp. resulted in smaller necroses. The conclusion from other regions about the coincidence the damage of European ash by ADB and collar rots as well as the coincidence the damage of European ash by collar rot and tree colonization by Hylesinus crenatus (Fabricius, 1787) is supported.

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