scholarly journals Artificial Intelligence-Based Mitosis Detection in Breast Cancer Histopathology Images Using Faster R-CNN and Deep CNNs

2020 ◽  
Vol 9 (3) ◽  
pp. 749 ◽  
Author(s):  
Tahir Mahmood ◽  
Muhammad Arsalan ◽  
Muhammad Owais ◽  
Min Beom Lee ◽  
Kang Ryoung Park

Breast cancer is the leading cause of mortality in women. Early diagnosis of breast cancer can reduce the mortality rate. In the diagnosis, the mitotic cell count is an important biomarker for predicting the aggressiveness, prognosis, and grade of breast cancer. In general, pathologists manually examine histopathology images under high-resolution microscopes for the detection of mitotic cells. However, because of the minute differences between the mitotic and normal cells, this process is tiresome, time-consuming, and subjective. To overcome these challenges, artificial-intelligence-based (AI-based) techniques have been developed which automatically detect mitotic cells in the histopathology images. Such AI techniques accelerate the diagnosis and can be used as a second-opinion system for a medical doctor. Previously, conventional image-processing techniques were used for the detection of mitotic cells, which have low accuracy and high computational cost. Therefore, a number of deep-learning techniques that demonstrate outstanding performance and low computational cost were recently developed; however, they still require improvement in terms of accuracy and reliability. Therefore, we present a multistage mitotic-cell-detection method based on Faster region convolutional neural network (Faster R-CNN) and deep CNNs. Two open datasets (international conference on pattern recognition (ICPR) 2012 and ICPR 2014 (MITOS-ATYPIA-14)) of breast cancer histopathology were used in our experiments. The experimental results showed that our method achieves the state-of-the-art results of 0.876 precision, 0.841 recall, and 0.858 F1-measure for the ICPR 2012 dataset, and 0.848 precision, 0.583 recall, and 0.691 F1-measure for the ICPR 2014 dataset, which were higher than those obtained using previous methods. Moreover, we tested the generalization capability of our technique by testing on the tumor proliferation assessment challenge 2016 (TUPAC16) dataset and found that our technique also performs well in a cross-dataset experiment which proved the generalization capability of our proposed technique.

2020 ◽  
Author(s):  
Tahir Mahmood ◽  
Muhammad Owais ◽  
Kyoung Jun Noh ◽  
Hyo Sik Yoon ◽  
Adnan Haider ◽  
...  

BACKGROUND Accurate nuclei segmentation in histopathology images plays a key role in digital pathology. It is considered a prerequisite for the determination of cell phenotype, nuclear morphometrics, cell classification, and the grading and prognosis of cancer. However, it is a very challenging task because of the different types of nuclei, large intra-class variations, and diverse cell morphologies. Consequently, the manual inspection of such images under high-resolution microscopes is tedious and time-consuming. Alternatively, artificial intelligence (AI)-based automated techniques, which are fast, robust, and require less human effort, can be used. Recently, several AI-based nuclei segmentation techniques have been proposed. They have shown a significant performance improvement for this task, but there is room for further improvement. Thus, we propose an AI-based nuclei segmentation technique in which we adopt a new nuclei segmentation network empowered by residual skip connections to address this issue. OBJECTIVE The aim of this study was to develop an AI-based nuclei segmentation method for histopathology images of multiple organs. METHODS Our proposed residual-skip-connections-based nuclei segmentation network (R-NSN) is comprised of two main stages: Stain normalization and nuclei segmentation as shown in Figure 2. In the 1st stage, a histopathology image is stain normalized to balance the color and intensity variation. Subsequently, it is used as an input to the R-NSN in stage 2, which outputs a segmented image. RESULTS Experiments were performed on two publicly available datasets: 1) The Cancer Genomic Atlas (TCGA), and 2) Triple-negative Breast Cancer (TNBC). The results show that our proposed technique achieves an aggregated Jaccard index (AJI) of 0.6794, Dice coefficient of 0.8084, and F1-measure of 0.8547 on the TCGA dataset, and an AJI of 0.7332, Dice coefficient of 0.8441, precision of 0.8352, recall of 0.8306, and F1-measure of 0.8329 on the TNBC dataset. These values are higher than those of the state-of-the-art methods. CONCLUSIONS The proposed R-NSN has the potential to maintain crucial features by using the residual connectivity from the encoder to the decoder and uses only a few layers, which reduces the computational cost of the model. The selection of a good stain normalization technique, the effective use of residual connections to avoid information loss, and the use of only a few layers to reduce the computational cost yielded outstanding results. Thus, our nuclei segmentation method is robust and is superior to the state-of-the-art methods. We expect that this study will contribute to the development of computational pathology software for research and clinical use and enhance the impact of computational pathology.


2015 ◽  
Vol 20 (1) ◽  
pp. 237-248 ◽  
Author(s):  
Mitko Veta ◽  
Paul J. van Diest ◽  
Stefan M. Willems ◽  
Haibo Wang ◽  
Anant Madabhushi ◽  
...  

2020 ◽  
Vol 31 ◽  
pp. 101885
Author(s):  
Noorulain Maroof ◽  
Asifullah Khan ◽  
Shahzad Ahmad Qureshi ◽  
Aziz ul Rehman ◽  
Rafiullah Khan Khalil ◽  
...  

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