scholarly journals DNA Metabarcoding as a Tool for Disentangling Food Webs in Agroecosystems

Insects ◽  
2020 ◽  
Vol 11 (5) ◽  
pp. 294
Author(s):  
Ahmadou Sow ◽  
Julien Haran ◽  
Laure Benoit ◽  
Maxime Galan ◽  
Thierry Brévault
Keyword(s):  
Food Webs ◽  
High Throughput Sequencing ◽  
Diet Breadth ◽  
Generalist Predators ◽  
Ecological Processes ◽  
Arthropod Predators ◽  
Trophic Network ◽  
Natural Pest Regulation ◽  
The Impact ◽  
Trophic Linkages

Better knowledge of food webs and related ecological processes is fundamental to understanding the functional role of biodiversity in ecosystems. This is particularly true for pest regulation by natural enemies in agroecosystems. However, it is generally difficult to decipher the impact of predators, as they often leave no direct evidence of their activity. Metabarcoding via high-throughput sequencing (HTS) offers new opportunities for unraveling trophic linkages between generalist predators and their prey, and ultimately identifying key ecological drivers of natural pest regulation. Here, this approach proved effective in deciphering the diet composition of key predatory arthropods (nine species.; 27 prey taxa), insectivorous birds (one species, 13 prey taxa) and bats (one species; 103 prey taxa) sampled in a millet-based agroecosystem in Senegal. Such information makes it possible to identify the diet breadth and preferences of predators (e.g., mainly moths for bats), to design a qualitative trophic network, and to identify patterns of intraguild predation across arthropod predators, insectivorous vertebrates and parasitoids. Appropriateness and limitations of the proposed molecular-based approach for assessing the diet of crop pest predators and trophic linkages are discussed.

scholarly journals Differences in tropical vs. temperate diversity in arthropod predators provide insights into causes of latitudinal gradients of species diversity

2018 ◽  
Author(s):  
Kaïna Privet ◽  
Julien Petillon
Keyword(s):  
Species Richness ◽  
Temperate Forest ◽  
Diet Breadth ◽  
Latitudinal Gradients ◽  
Tropical Rainforests ◽  
Generalist Predators ◽  
Terrestrial Arthropods ◽  
Arthropod Predators ◽  
Tropical Diversity ◽  
The Tropics

AbstractHigh diversity in tropical compared to temperate regions has long intrigued ecologists. Terrestrial arthropods are among the most speciose orders in tropical rainforests. Previous studies show that arthropod herbivores account for much tropical diversity, yet differences in diversity of arthropod predators between tropical and temperate systems have not been quantified. Here, we present the first standardized tropical-temperate forest comparison of species richness and evenness for understory spiders, a dominant and mega-diverse taxa of generalist predators. Species richness was 13-82 times higher in tropical vs. temperate forests. Evenness was also higher with tropical assemblages having 12-55 times more common and 10-40 times more dominant species. By contrast, proportion of rare species were only up to two times greater than that of temperate measurements. These differences in diversity far surpass previous estimates, and exceed tropical-temperate difference for herbivorous taxa. Thus, the extreme diversity of arthropod predators is associated not only with the higher diversity of prey in tropical vs. temperate ecosystems, but probably also with increased diet breadth of understory spiders in the tropics. This work contradicts the widely accepted hypothesis that tropical diversity is associated with more specialization of predators.

scholarly journals Diet breadth influences how the impact of invasive plants is propagated through food webs

Ecology ◽  
2010 ◽  
Vol 91 (4) ◽  
pp. 1063-1074 ◽  
Author(s):  
Luisa G. Carvalheiro ◽  
Yvonne M. Buckley ◽  
Jane Memmott
Keyword(s):  
Food Webs ◽  
Invasive Plants ◽  
Diet Breadth ◽  
The Impact

Kalahari Cheetahs

2017 ◽  
Author(s):  
Gus Mills ◽  
Margaret Mills
Keyword(s):  
Reproductive Success ◽  
Spatial Ecology ◽  
Prey Selection ◽  
Arid Ecosystems ◽  
Foraging Success ◽  
Ecological Processes ◽  
Demographic Groups ◽  
Important Prey ◽  
Hunting Behaviour ◽  
The Impact

This book demonstrates how cheetahs are adapted to arid savannahs like the southern Kalahari, and makes comparisons with other areas, especially the Serengeti. Topics dealt with are: demography and genetic status; feeding ecology, i.e. methods used for studying diet, diets of different demographic groups, individual diet specializations of females, prey selection, the impact of cheetah predation on prey populations, activity regimes and distances travelled per day, hunting behaviour, foraging success and energetics; interspecific competition; spatial ecology; reproductive success and the mating system; and conservation. The major findings show that cheetahs are well adapted to arid ecosystems and are water independent. Cheetah density in the study area was stable at 0.7/100 km2 and the population was genetically diverse. Important prey were steenbok and springbok for females with cubs, gemsbok, and adult ostrich for coalition males, and steenbok, springhares, and hares for single animals. Cheetahs had a density-dependent regulatory effect on steenbok and springbok populations. Females with large cubs had the highest overall food intake. Cheetahs, especially males, were often active at night, and competition with other large carnivores, both by exploitation and interference, was slight. Although predation on small cubs was severe, cub survival to adolescence was six times higher than in the Serengeti. There was no difference in reproductive success between single and coalition males. The conservation priority for cheetahs should be to maintain protected areas over a spectrum of landscapes to allow ecological processes, of which the cheetah is an integral part, to proceed unhindered.

Effects of pH shock on microaerobic activated sludge system with a graphene oxide/nano-magnetic powder composite

2020 ◽  
Vol 35 (3) ◽  
pp. 457-463
Author(s):  
Huixia Lan ◽  
Xiangzhi Wang ◽  
Shixin Qi ◽  
Da Yang ◽  
Hao Zhang
Keyword(s):  
Graphene Oxide ◽  
Activated Sludge ◽  
High Throughput Sequencing ◽  
Impact Resistance ◽  
Magnetic Powder ◽  
Blank Group ◽  
Activated Sludge System ◽  
Ph Shock ◽  
Dominant Bacteria ◽  
The Impact

AbstractUsing the acclimated activated sludge from the pulping middle-stage effluent, the effect of pH shock on the micro-oxygen activated sludge system with a nano-magnetic powder/graphene oxide composite was studied. The results showed that the removal rates of chemical oxygen demand (CODCr) and ultraviolet adsorption at 254 nm (UV254) decreased. Also, the sludge settling performance was poor due to the impact of pH, but the impact resistance of nano-magnetic powder/graphene oxide group (MGO group) was higher and the recovery was faster. Results of high throughput sequencing indicated that the diversity of microbial community was reduced by the impact of pH, but it was significantly higher in MGO group than in the blank group. The dominant bacteria after pH shock or recovery in both of the system had a large difference. The percentage of the dominant bacteria in the MGO group was higher than that in the blank group. The MGO group had higher electron transfer system (ETS) activity which made the system having a strong pH impact resistance.

scholarly journals 16S rRNA gene and 18S rRNA gene diversity in microbial mat communities in meltwater ponds on the McMurdo Ice Shelf, Antarctica

Polar Biology ◽  
2021 ◽  
Author(s):  
Eleanor E. Jackson ◽  
Ian Hawes ◽  
Anne D. Jungblut
Keyword(s):  
16S Rrna ◽  
18S Rrna ◽  
High Throughput Sequencing ◽  
Microbial Mats ◽  
Gene Diversity ◽  
Salinity Gradient ◽  
18S Rrna Gene ◽  
Rrna Gene ◽  
Ice Shelf ◽  
The Impact

AbstractThe undulating ice of the McMurdo Ice Shelf, Southern Victoria Land, supports one of the largest networks of ice-based, multiyear meltwater pond habitats in Antarctica, where microbial mats are abundant and contribute most of the biomass and biodiversity. We used 16S rRNA and 18S rRNA gene high-throughput sequencing to compare variance of the community structure in microbial mats within and between ponds with different salinities and pH. Proteobacteria and Cyanobacteria were the most abundant phyla, and composition at OTU level was highly specific for the meltwater ponds with strong community sorting along the salinity gradient. Our study provides the first detailed evaluation of eukaryote communities for the McMurdo Ice Shelf using the 18S rRNA gene. They were dominated by Ochrophyta, Chlorophyta and Ciliophora, consistent with previous microscopic analyses, but many OTUs belonging to less well-described heterotrophic protists from Antarctic ice shelves were also identified including Amoebozoa, Rhizaria and Labyrinthulea. Comparison of 16S and 18S rRNA gene communities showed that the Eukaryotes had lower richness and greater similarity between ponds in comparison with Bacteria and Archaea communities on the McMurdo Ice shelf. While there was a weak correlation between community dissimilarity and geographic distance, the congruity of microbial assemblages within ponds, especially for Bacteria and Archaea, implies strong habitat filtering in ice shelf meltwater pond ecosystems, especially due to salinity. These findings help to understand processes that are important in sustaining biodiversity and the impact of climate change on ice-based aquatic habitats in Antarctica.

scholarly journals Assessing Genotypic and Environmental Effects on Endophyte Communities of Fraxinus (Ash) Using Culture Dependent and Independent DNA Sequencing

2021 ◽  
Vol 7 (7) ◽  
pp. 565
Author(s):  
Anindita Lahiri ◽  
Brian R. Murphy ◽  
Trevor R. Hodkinson
Keyword(s):  
Community Composition ◽  
Environmental Effects ◽  
High Throughput Sequencing ◽  
Fungal Community Composition ◽  
Species Identity ◽  
Ash Dieback ◽  
Hymenoscyphus Fraxineus ◽  
Culture Independent ◽  
The Impact ◽  
Culture Dependent

Fraxinus excelsior populations are in decline due to the ash dieback disease Hymenoscyphus fraxineus. It is important to understand genotypic and environmental effects on its fungal microbiome to develop disease management strategies. To do this, we used culture dependent and culture independent approaches to characterize endophyte material from contrasting ash provenances, environments, and tissues (leaves, roots, seeds). Endophytes were isolated and identified using nrITS, LSU, or tef DNA loci in the culture dependent assessments, which were mostly Ascomycota and assigned to 37 families. Few taxa were shared between roots and leaves. The culture independent approach used high throughput sequencing (HTS) of nrITS amplicons directly from plant DNA and detected 35 families. Large differences were found in OTU diversity and community composition estimated by the contrasting approaches and these data need to be combined for estimations of the core endophyte communities. Species richness and Shannon index values were highest for the leaf material and the French population. Few species were shared between seed and leaf tissue. PCoA and NMDS of the HTS data showed that seed and leaf microbiome communities were highly distinct and that there was a strong influence of Fraxinus species identity on their fungal community composition. The results will facilitate a better understanding of ash fungal ecology and are a step toward identifying microbial biocontrol systems to minimize the impact of the disease.

scholarly journals Evaluating the Impact of Two Generalist Predators on the Leafhopper Erasmoneura vulnerata Population Density

Insects ◽  
2021 ◽  
Vol 12 (4) ◽  
pp. 321
Author(s):  
Stefan Cristian Prazaru ◽  
Giulia Zanettin ◽  
Alberto Pozzebon ◽  
Paola Tirello ◽  
Francesco Toffoletto ◽  
...  
Keyword(s):  
Field Experiments ◽  
Field Studies ◽  
Generalist Predators ◽  
Predator Species ◽  
Potted Plants ◽  
Naturally Occurring ◽  
Orius Majusculus ◽  
Limited Effectiveness ◽  
Pest Outbreaks ◽  
The Impact

Outbreaks of the Nearctic leafhopper Erasmoneura vulnerata represent a threat to vinegrowers in Southern Europe, in particular in North-eastern Italy. The pest outbreaks are frequent in organic vineyards because insecticides labeled for organic viticulture show limited effectiveness towards leafhoppers. On the other hand, the naturally occurring predators and parasitoids of E. vulnerata in vineyards are often not able to keep leafhopper densities at acceptable levels for vine-growers. In this study, we evaluated the potential of two generalist, commercially available predators, Chrysoperla carnea and Orius majusculus, in suppressing E. vulnerata. Laboratory and semi-field experiments were carried out to evaluate both species’ predation capacity on E. vulnerata nymphs. The experiments were conducted on grapevine leaves inside Petri dishes (laboratory) and on potted and caged grapevines (semi-field); in both experiments, the leaves or potted plants were infested with E. vulnerata nymphs prior to predator releases. Both predator species exhibited a remarkable voracity and significantly reduced leafhopper densities in laboratory and semi-field experiments. Therefore, field studies were carried out over two growing seasons in two vineyards. We released 4 O. majusculus adults and 30 C. carnea larvae per m2 of canopy. Predator releases in vineyards reduced leafhopper densities by about 30% compared to the control plots. Results obtained in this study showed that the two predators have a potential to suppress the pest density, but more research is required to define appropriate predator–prey release ratios and release timing. Studies on intraguild interactions and competition with naturally occurring predators are also suggested.

scholarly journals Ocean Acidification Amplifies the Olfactory Response to 2-Phenylethylamine: Altered Cue Reception as a Mechanistic Pathway?

2021 ◽  
Author(s):  
Paula Schirrmacher ◽  
Christina C. Roggatz ◽  
David M. Benoit ◽  
Jörg D. Hardege
Keyword(s):  
Climate Change ◽  
Ocean Acidification ◽  
Hermit Crabs ◽  
Ecological Interactions ◽  
Ecological Processes ◽  
Mechanistic Pathway ◽  
Sea Lampreys ◽  
Pagurus Bernhardus ◽  
Decreasing Ph ◽  
The Impact

AbstractWith carbon dioxide (CO2) levels rising dramatically, climate change threatens marine environments. Due to increasing CO2 concentrations in the ocean, pH levels are expected to drop by 0.4 units by the end of the century. There is an urgent need to understand the impact of ocean acidification on chemical-ecological processes. To date, the extent and mechanisms by which the decreasing ocean pH influences chemical communication are unclear. Combining behaviour assays with computational chemistry, we explore the function of the predator related cue 2-phenylethylamine (PEA) for hermit crabs (Pagurus bernhardus) in current and end-of-the-century oceanic pH. Living in intertidal environments, hermit crabs face large pH fluctuations in their current habitat in addition to climate-change related ocean acidification. We demonstrate that the dietary predator cue PEA for mammals and sea lampreys is an attractant for hermit crabs, with the potency of the cue increasing with decreasing pH levels. In order to explain this increased potency, we assess changes to PEA’s conformational and charge-related properties as one potential mechanistic pathway. Using quantum chemical calculations validated by NMR spectroscopy, we characterise the different protonation states of PEA in water. We show how protonation of PEA could affect receptor-ligand binding, using a possible model receptor for PEA (human TAAR1). Investigating potential mechanisms of pH-dependent effects on olfactory perception of PEA and the respective behavioural response, our study advances the understanding of how ocean acidification interferes with the sense of smell and thereby might impact essential ecological interactions in marine ecosystems.

scholarly journals Diet composition of the invasive red-whiskered bulbul Pycnonotus jocosus in Mauritius

2010 ◽  
Vol 26 (3) ◽  
pp. 347-350 ◽  
Author(s):  
Jannie Fries Linnebjerg ◽  
Dennis M. Hansen ◽  
Nancy Bunbury ◽  
Jens M. Olesen
Keyword(s):  
Invasive Species ◽  
Introduced Species ◽  
Native Species ◽  
Diet Composition ◽  
Ecological Perspective ◽  
Positive Interactions ◽  
Invasional Meltdown ◽  
Ecological Processes ◽  
Successful Establishment ◽  
The Impact

Disruption of ecosystems is one of the biggest threats posed by invasive species (Mack et al. 2000). Thus, one of the most important challenges is to understand the impact of exotic species on native species and habitats (e.g. Jones 2008). The probability that entire ‘invasive communities’ will develop increases as more species establish in new areas (Bourgeois et al. 2005). For example, introduced species may act in concert, facilitating one another's invasion, and increasing the likelihood of successful establishment, spread and impact. Simberloff & Von Holle (1999) introduced the term ‘invasional meltdown’ for this process, which has received widespread attention since (e.g. O'Dowd 2003, Richardson et al. 2000, Simberloff 2006). Positive interactions among introduced species are relatively common, but few have been studied in detail (Traveset & Richardson 2006). Examples include introduced insects and birds that pollinate and disperse exotic plants, thereby facilitating the spread of these species into non-invaded habitats (Goulson 2003, Mandon-Dalger et al. 2004, Simberloff & Von Holle 1999). From a more general ecological perspective, the study of interactions involving introduced and invasive species can contribute to our knowledge of ecological processes – for example, community assembly and indirect interactions.

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