scholarly journals Dietary Interventions Ameliorate Infectious Colitis by Restoring the Microbiome and Promoting Stem Cell Proliferation in Mice

2021 ◽  
Vol 23 (1) ◽  
pp. 339
Author(s):  
Ishfaq Ahmed ◽  
Kafayat Yusuf ◽  
Badal C. Roy ◽  
Jason Stubbs ◽  
Shrikant Anant ◽  
...  

Decreases in short-chain-fatty-acids (SCFAs) are linked to inflammatory bowel disease (IBD). Yet, the mechanisms through which SCFAs promote wound healing, orchestrated by intestinal stem cells, are poorly understood. We discovered that, in mice with Citrobacter rodentium (CR)-induced infectious colitis, treatment with Pectin and Tributyrin diets reduced the severity of colitis by restoring Firmicutes and Bacteroidetes and by increasing mucus production. RNA-seq in young adult mouse colon (YAMC) cells identified higher expression of Lgr4, Lgr6, DCLK1, Muc2, and SIGGIR after Butyrate treatment. Lineage tracing in CR-infected Lgr5-EGFP-IRES-CreERT2/ROSA26-LacZ (Lgr5-R) mice also revealed an expansion of LacZ-labeled Lgr5(+) stem cells in the colons of both Pectin and Tributyrin-treated mice compared to control. Interestingly, gut microbiota was required for Pectin but not Tributyrin-induced Lgr5(+) stem cell expansion. YAMC cells treated with sodium butyrate exhibited increased Lgr5 promoter reporter activity due to direct Butyrate binding with Lgr5 at −4.0 Kcal/mol, leading to thermal stabilization. Upon ChIP-seq, H3K4me3 increased near Lgr5 transcription start site that contained the consensus binding motif for a transcriptional activator of Lgr5 (SPIB). Thus, a multitude of effects on gut microbiome, differential gene expression, and/or expansion of Lgr5(+) stem cells seem to underlie amelioration of colitis following dietary intervention.

2018 ◽  
Vol 115 (4) ◽  
pp. E610-E619 ◽  
Author(s):  
Onur Basak ◽  
Teresa G. Krieger ◽  
Mauro J. Muraro ◽  
Kay Wiebrands ◽  
Daniel E. Stange ◽  
...  

The adult mouse subependymal zone provides a niche for mammalian neural stem cells (NSCs). However, the molecular signature, self-renewal potential, and fate behavior of NSCs remain poorly defined. Here we propose a model in which the fate of active NSCs is coupled to the total number of neighboring NSCs in a shared niche. Using knock-in reporter alleles and single-cell RNA sequencing, we show that the Wnt target Tnfrsf19/Troy identifies both active and quiescent NSCs. Quantitative analysis of genetic lineage tracing of individual NSCs under homeostasis or in response to injury reveals rapid expansion of stem-cell number before some return to quiescence. This behavior is best explained by stochastic fate decisions, where stem-cell number within a shared niche fluctuates over time. Fate mapping proliferating cells using a Ki67iresCreER allele confirms that active NSCs reversibly return to quiescence, achieving long-term self-renewal. Our findings suggest a niche-based mechanism for the regulation of NSC fate and number.


2016 ◽  
Vol 113 (27) ◽  
pp. 7509-7514 ◽  
Author(s):  
Philip Greulich ◽  
Benjamin D. Simons

To maintain cycling adult tissue in homeostasis the balance between proliferation and differentiation of stem cells needs to be precisely regulated. To investigate how stem cells achieve perfect self-renewal, emphasis has been placed on models in which stem cells progress sequentially through a one-way proliferative hierarchy. However, investigations of tissue regeneration have revealed a surprising degree of flexibility, with cells normally committed to differentiation able to recover stem cell competence following injury. Here, we investigate whether the reversible transfer of cells between states poised for proliferation or differentiation may provide a viable mechanism for a heterogeneous stem cell population to maintain homeostasis even under normal physiological conditions. By addressing the clonal dynamics, we show that such models of “dynamic heterogeneity” may be equally capable of describing the results of recent lineage tracing assays involving epithelial tissues. Moreover, together with competition for limited niche access, such models may provide a mechanism to render tissue homeostasis robust. In particular, in 2D epithelial layers, we show that the mechanism of dynamic heterogeneity avoids some pathological dependencies that undermine models based on a hierarchical stem/progenitor organization.


2019 ◽  
Author(s):  
Bradley Pawlikowski ◽  
Nicole Dalla Betta ◽  
Tiffany Antwine ◽  
Bradley B. Olwin

SummarySkeletal muscle maintenance and repair is dependent on the resident adult muscle stem cell (MuSC). During injury, and in diseased muscle, stem cells are engaged to replace or repair damaged muscle, which requires the stem cells to exit quiescence and expand, followed by differentiation to regenerate myofibers and self-renewal to replenish the stem cell population. Following an injury, little is known regarding the timing of MuSC (skeletal muscle stem cell) self-renewal, myoblast expansion or myoblast differentiation. To determine the timing and kinetics of these cell fate decisions, we employed DNA-based lineage tracing to label newly replicated cells and followed cell fates during skeletal muscle regeneration. MuSCs activate and expand as myoblasts rapidly following injury, where the majority differentiate into myonuclei, establishing the centrally located myonuclear pool. Re-establishing the majority MuSC pool by self-renewal occurs after 5 days post-muscle injury, accompanied by low levels of myonuclear accretion that generate only peripheral myonuclei. In aged mice, possessing ∼1/2 the number of MuSCs present in young adult mice, the timing of post injury MuSC self-renewal is delayed, and although MuSCs expansion as myoblasts in aged muscle is impaired, the number of MuSC unexpectedly recovers to young adult levels during regeneration. Following an induced muscle injury, we found that myonuclei are generated within the first four days post injury derived from myoblasts expanding from activated MuSCs. Only later during regeneration, from 5 d to 14 d post injury, is the MuSC pool replenished by self-renewal, accompanied by generation of peripheral myonuclei.


2019 ◽  
Author(s):  
Xue Wang ◽  
Haibo Xu ◽  
Chaping Cheng ◽  
Zhongzhong Ji ◽  
Huifang Zhao ◽  
...  

AbstractThe basal cell compartment in many epithelial tissues such as the prostate, bladder, and mammary gland are generally believed to serve as an important pool of stem cells. However, basal cells are heterogenous and the stem cell subpopulation within basal cells is not well elucidated. Here we uncover that the core epithelial-to-mesenchymal transition (EMT) inducer Zeb is exclusively expressed in a prostate basal cell subpopulation based on both immunocytochemical and cell lineage tracing analysis. The Zeb1+prostate epithelial cells are multipotent prostate basal stem cells (PBSCs) that can self-renew and generate functional prostatic glandular structures with all three epithelial cell types at the single-cell level. Genetic ablation studies reveal an indispensable role for Zeb1 in prostate basal cell development. Utilizing unbiased single cell transcriptomic analysis of over 9000 mouse prostate basal cells, we find that Zeb1+basal cell subset shares gene expression signatures with both epithelial and mesenchymal cells and stands out uniquely among all the basal cell clusters. Moreover, Zeb1+epithelial cells can be detected in mouse and clinical samples of prostate tumors. Identification of the PBSC and its transcriptome profile is crucial to advance our understanding of prostate development and tumorigenesis.


2021 ◽  
Author(s):  
Kazuteru Hasegawa ◽  
Yang Zhao ◽  
Alina Garbuzov ◽  
M. Ryan Corces ◽  
Lu Chen ◽  
...  

SummaryTelomerase is intimately associated with stem cells and upregulated in cancer, where it serves essential roles through its catalytic action in elongating telomeres, nucleoprotein caps that protect chromosome ends1. Overexpression of the telomerase reverse transcriptase (TERT) enhances cell proliferation through telomere-independent means, yet definitive evidence for such a direct role in stem cell function has yet to be revealed through loss-of-function studies. Here, we show that conditional deletion of TERT in spermatogonial stem cells (SSCs) markedly impairs competitive clone formation. Using lineage-tracing from the Tert locus, we find that TERT-expressing SSCs yield long-lived clones, but that selective TERT-inactivation in SSCs causes accelerated stem cell differentiation thereby disrupting clone formation. This requirement for TERT in clone formation is bypassed by expression of a catalytically inactive TERT transgene and occurs independently of the canonical telomerase complex. TERT inactivation induces a genome-wide reduction in open chromatin evident in purified SSCs, but not in committed progenitor cells. Loss of TERT causes reduced activity of the MYC oncogene and transgenic expression of MYC in TERT-deleted SSCs efficiently rescues clone formation. These data reveal a required catalytic activity-independent role for TERT in preventing stem cell differentiation, forge a genetic link between TERT and MYC and suggest new means by which TERT may promote tumorigenesis.


Author(s):  
Francisca Soares-da-Silva ◽  
Odile Burlen-Defranoux ◽  
Ramy Elsaid ◽  
Lorea Iturri ◽  
Laina Freyer ◽  
...  

AbstractThe first hematopoietic cells are produced in the yolk sac and are thought to be rapidly replaced by the progeny of hematopoietic stem cells. Here we document that hematopoietic stem cells do not contribute significantly to erythrocyte production up until birth. Lineage tracing of yolk sac-derived erythromyeloid progenitors, that also contribute to tissue resident macrophages, shows a progeny of highly proliferative erythroblasts, that after intra embryonic injection, rapidly differentiate. These progenitors, similar to hematopoietic stem cells, are c-Myb dependent and are developmentally restricted as they are not found in the bone marrow. We show that erythrocyte progenitors of yolk sac origin require lower concentrations of erythropoietin than their hematopoietic stem cell-derived counterparts for efficient erythrocyte production. Consequently, fetal liver hematopoietic stem cells fail to generate megakaryocyte and erythrocyte progenitors. We propose that large numbers of yolk sac-derived erythrocyte progenitors have a selective advantage and efficiently outcompete hematopoietic stem cell progeny in an environment with limited availability of erythropoietin.


2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Yuki Fujimichi ◽  
Kensuke Otsuka ◽  
Masanori Tomita ◽  
Toshiyasu Iwasaki

AbstractStem cell competition could shed light on the tissue-based quality control mechanism that prevents carcinogenesis. To quantitatively evaluate stem cell competition in vitro, we developed a two-color intestinal organoid forming system. First, we improved a protocol of culturing organoids from intestinal leucine-rich-repeat containing G-protein-coupled receptor 5 (Lgr5)- enhanced green fluorescent protein (EGFP)high stem cells directly sorted on Matrigel without embedding. The organoid-forming potential (OFP) was 25% of Lgr5-EGFPhigh cells sorted at one cell per well. Using this culture protocol with lineage tracing, we established a two-color organoid culture system by mixing stem cells expressing different fluorescent colors. To analyze stem cell competition, two-color organoids were formed by mixing X-ray-irradiated and non-irradiated intestinal stem cells. In the two-color organoids, irradiated stem cells exhibited a growth disadvantage, although the OFP of irradiated cells alone did not decrease significantly from that of non-irradiated cells. These results suggest that stem cell competition can be evaluated quantitively in vitro using our new system.


Blood ◽  
2016 ◽  
Vol 128 (22) ◽  
pp. 935-935
Author(s):  
Puneet Agarwal ◽  
Hui Li ◽  
Andrew J Paterson ◽  
Jianbo He ◽  
Ravi Bhatia

Abstract Specialized bone marrow microenvironment (BMM) niches are essential for hematopoietic stem cell (HSC) maintenance and differentiation, and include perivascular cells with mesenchymal stem cells (MSC) capacity. The role of BMM niches in regulating LSC growth remains unclear. We have shown that cytokines altered in CML BMM contribute a competitive growth advantage to CML LSC over normal HSC (Zhang et al. Cancer Cell. 2012; 21(4):577). However, the effect of leukemic hematopoiesis on BM MSC and their progeny, and the effect of such alterations on the regulation of LSC versus HSC growth, is not well studied. Recently rigorous single-cell analyses and lineage tracing has been used to delineate a BM skeletal stem cell (SSC) hierarchy (Chan et al. Cell. 2015, 160(1-2):285). Eight distinct subpopulations were identified within the CD45-Ter119-Tie2-AlphaV+ BM mesenchymal cells, of which the mSSC (Thy-6C3-CD105-CD200+) subpopulation generated all of the other subpopulations. Two multipotent progenitor populations, pre-BCSP (Thy-6C3-CD105-CD200-) and BCSP (Thy-6C3-CD105+) gave rise to bone, cartilage and hematopoietic supportive stroma. The 6C3 (Thy-6C3+CD105+) and HEC (Thy-6C3+CD105-) populations gave rise to stroma, the BLSP (Thy+6C3-CD105-) and Thy (Thy+6C3-CD105+CD200-); populations formed bone, and the PCP (Thy+6C3-CD105+CD200+) population formed cartilage. To examine how these mesenchymal populations related to those targeted in the Cre-transgenic mouse lines commonly used to study BMM, we performed lineage tracing by crossing Prx-1-Cre, Sp7-Cre, BGLAP-Cre, and UBC-Cre mice with Rosa26CAG-tdTomato mice, in which tdTomato is expressed by cells targeted for Cre-mediated recombination. Interestingly, mSSC and 6C3 cells were targeted in all Cre lines, while the Thy population was only targeted in Prx1-Cre mice. We examined SSC population distribution and function following CML development using the SCL-tTA-BCR-ABL transgenic mouse model. The frequency and absolute number of bone-forming Thy (WT: 442.5±65.66; CML: 2501±705.5; p=0.012, n=14) and stroma-forming 6C3 (WT:1061±193.7; CML: 2271±358.5; p=0.009, n=14) cells were significantly increased in BM of CML mice compared to wild-type (WT) mice, while primitive mSSC, pre-BCSP and BCSP populations remained unchanged. Expression of major hematopoietic regulatory molecules, transcription factors and cell cycle regulatory genes in CML and WT BMM subsets was measured by qPCR analysis using the Fluidigm system. Integrin α4 and Tenascin levels were reduced, whereas PDGFRβ, BMP2 and Hif-1α levels were increased in CML compared to normal mSSC. Several WNT pathway members were significantly upregulated in CML compared to WT 6C3 stromal cells, whereas CXCL12, KitL, IL-3, and IGF-1 were reduced. Expression of cell cycle regulators, Hedgehog and Notch pathway members remained unchanged. In ongoing experiments to investigate whether these subsets have altered HSC supportive capacity towards normal and CML stem cells, we co-cultured FACS sorted normal or CML LTHSC with FACS sorted normal or CML mSSC, BCSP, 6C3, and Thy cells for 3 days followed by transplantation into lethally irradiated WT mice. Normal LTHSC engraftment at 4 weeks post-transplant was enhanced by coculture with normal mSSC but not with CML mSSC. In contrast, there was increased engraftment of normal LTHSC co-cultured with CML compared to normal BCSP, Thy or 6C3 cells. CML LTHSC engraftment at 4 weeks was not enhanced by either normal or CML mSSC, but was enhanced following co-culture with normal as well as CML Thy and 6C3 cells. These results indicate that SSC subpopulations from CML BM demonstrate altered capacity to support normal LTHSC compared to their normal counterparts, but that CML and WT SSC populations may have similar effects on CML LTHSC. This experiment is ongoing with results of longer-term engraftment pending. In conclusion, we have further characterized a phenotypically-defined skeletal stem cell hierarchy and identified significant alterations in distribution of SSC subpopulations within CML compared to WT BM, with significantly altered expression of important hematopoietic regulatory molecules and HSC supportive function. We hypothesize that leukemia-induced SSC alterations may confer a growth advantage to CML LSC over normal HSC, and that characterization of key regulatory mechanisms could facilitate therapeutic intervention. Disclosures No relevant conflicts of interest to declare.


eLife ◽  
2017 ◽  
Vol 6 ◽  
Author(s):  
Kerstin Seidel ◽  
Pauline Marangoni ◽  
Cynthia Tang ◽  
Bahar Houshmand ◽  
Wen Du ◽  
...  

Investigations into stem cell-fueled renewal of an organ benefit from an inventory of cell type-specific markers and a deep understanding of the cellular diversity within stem cell niches. Using the adult mouse incisor as a model for a continuously renewing organ, we performed an unbiased analysis of gene co-expression relationships to identify modules of co-expressed genes that represent differentiated cells, transit-amplifying cells, and residents of stem cell niches. Through in vivo lineage tracing, we demonstrated the power of this approach by showing that co-expression module members Lrig1 and Igfbp5 define populations of incisor epithelial and mesenchymal stem cells. We further discovered that two adjacent mesenchymal tissues, the periodontium and dental pulp, are maintained by distinct pools of stem cells. These findings reveal novel mechanisms of incisor renewal and illustrate how gene co-expression analysis of intact biological systems can provide insights into the transcriptional basis of cellular identity.


2019 ◽  
Vol 116 (14) ◽  
pp. 6848-6857 ◽  
Author(s):  
Shiying Jin

The endometrial epithelium of the uterus regenerates periodically. The cellular source of newly regenerated endometrial epithelia during a mouse estrous cycle or a human menstrual cycle is presently unknown. Here, I have used single-cell lineage tracing in the whole mouse uterus to demonstrate that epithelial stem cells exist in the mouse uterus. These uterine epithelial stem cells provide a resident cellular supply that fuels endometrial epithelial regeneration. They are able to survive cyclical uterine tissue loss and persistently generate all endometrial epithelial lineages, including the functionally distinct luminal and glandular epithelia, to maintain uterine cycling. The uterine epithelial stem cell population also supports the regeneration of uterine endometrial epithelium post parturition. The 5-ethynyl-2′-deoxyuridine pulse-chase experiments further reveal that this stem cell population may reside in the intersection zone between luminal and glandular epithelial compartments. This tissue distribution allows these bipotent uterine epithelial stem cells to bidirectionally differentiate to maintain homeostasis and regeneration of mouse endometrial epithelium under physiological conditions. Thus, uterine function over the reproductive lifespan of a mouse relies on stem cell-maintained rhythmic endometrial regeneration.


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