scholarly journals Comparative Genomics of Eight Fusarium graminearum Strains with Contrasting Aggressiveness Reveals an Expanded Open Pangenome and Extended Effector Content Signatures

2021 ◽  
Vol 22 (12) ◽  
pp. 6257
Author(s):  
Tarek Alouane ◽  
Hélène Rimbert ◽  
Jörg Bormann ◽  
Gisela A. González-Montiel ◽  
Sandra Loesgen ◽  
...  
Keyword(s):  
Fusarium Head Blight ◽  
Fusarium Graminearum ◽  
Genome Structure ◽  
Genomic Diversity ◽  
Head Blight ◽  
Biosynthesis Gene Cluster ◽  
Infection Dynamics ◽  
Rapid Responses ◽  
Essential Components ◽  
Blight Disease

Fusarium graminearum, the primary cause of Fusarium head blight (FHB) in small-grain cereals, demonstrates remarkably variable levels of aggressiveness in its host, producing different infection dynamics and contrasted symptom severity. While the secreted proteins, including effectors, are thought to be one of the essential components of aggressiveness, our knowledge of the intra-species genomic diversity of F. graminearum is still limited. In this work, we sequenced eight European F. graminearum strains of contrasting aggressiveness to characterize their respective genome structure, their gene content and to delineate their specificities. By combining the available sequences of 12 other F. graminearum strains, we outlined a reference pangenome that expands the repertoire of the known genes in the reference PH-1 genome by 32%, including nearly 21,000 non-redundant sequences and gathering a common base of 9250 conserved core-genes. More than 1000 genes with high non-synonymous mutation rates may be under diverse selection, especially regarding the trichothecene biosynthesis gene cluster. About 900 secreted protein clusters (SPCs) have been described. Mostly localized in the fast sub-genome of F. graminearum supposed to evolve rapidly to promote adaptation and rapid responses to the host’s infection, these SPCs gather a range of putative proteinaceous effectors systematically found in the core secretome, with the chloroplast and the plant nucleus as the main predicted targets in the host cell. This work describes new knowledge on the intra-species diversity in F. graminearum and emphasizes putative determinants of aggressiveness, providing a wealth of new candidate genes potentially involved in the Fusarium head blight disease.

scholarly journals First Report on Identification of Fusarium graminearum Species Complex Members from Turkey and Iran

2019 ◽  
Vol 7 (7) ◽  
pp. 1040
Author(s):  
Berna Tunalı ◽  
Emre Yörük ◽  
Özlem Sefer ◽  
Bayram Kansu ◽  
Bahram Sharifnabi
Keyword(s):  
Fusarium Head Blight ◽  
Fusarium Graminearum ◽  
Species Complex ◽  
Histone H3 ◽  
28S Rdna ◽  
Head Blight ◽  
Identification Methods ◽  
Fusarium Graminearum Species Complex ◽  
Blight Disease ◽  
Β Tubulin

Fusarium graminearum species complex is the major Fusarium head blight disease pathogen in worldwide. Fusarium head blight disease lead to damages on small grain cereals. The identification of the F. graminearum species complex is important for improving disease control and management. Traditional identification methods such as macroscopy and microscopy analysis need to be supported by biochemical and genetics assays. Thus, DNA sequencing-based methods is one of the most preferred, reliable, low priced in the identification methods. In the study, 54 F. graminearum isolates obtained from diseased wheat, barley and corn fields in Turkey and Iran were identified by morphological characteristics and then characterized by species-specific SCAR marker. β-tubulin, Tef1-α, 28s rDNA and Histone H3 genes amplified, purified and then sequenced. The merged multiloci length was obtained as last of all 2215 bp. These sequencing results was used to multiloci genotyping assays. Last of all, 20 isolates were determined as F. graminearum sensu stricto by multiloci genotyping analysis. Remaining isolates were identified as F. asiaticum or Fusarium sp. . The findings are important in terms of revealing the first-time identification in Turkish and Iranian isolates as F. graminearum species complex members by amplification four (β-tubulin, Tef1-α, 28s rDNA and Histone H3) highly conserved DNA regions.

scholarly journals Potential of Pseudomonas chlororaphis subsp. aurantiaca Strain Pcho10 as a Biocontrol Agent Against Fusarium graminearum

2014 ◽  
Vol 104 (12) ◽  
pp. 1289-1297 ◽  
Author(s):  
Weiqun Hu ◽  
Qixun Gao ◽  
Mohamed Sobhy Hamada ◽  
Dawood Hosni Dawood ◽  
Jingwu Zheng ◽  
...  
Keyword(s):  
Fusarium Head Blight ◽  
Fusarium Graminearum ◽  
Biocontrol Agent ◽  
Identification System ◽  
Pseudomonas Chlororaphis ◽  
Bacterial Strains ◽  
Head Blight ◽  
Biosynthesis Gene Cluster ◽  
Microbial Identification

To develop an effective biocontrol strategy for management of Fusarium head blight on wheat caused by Fusarium graminearum, the bacterial biocontrol agent Pcho10 was selected from more than 1,476 wheat-head-associated bacterial strains according to its antagonistic activity in vitro. This strain was subsequently characterized as Pseudomonas chlororaphis subsp. aurantiaca based on 16S ribosomal DNA sequence analysis, assays of the BIOLOG microbial identification system, and unique pigment production. The major antifungal metabolite produced by Pcho10 was further identified as phenazine-1-carboxamide (PCN) on the basis of nuclear magnetic resonance data. The core PCN biosynthesis gene cluster in Pcho10 was cloned and sequenced. PCN showed strong inhibitory activity against F. graminearum conidial germination, mycelial growth, and deoxynivalenol production. Tests both under growth chamber conditions and in field trials showed that Pcho10 well colonized on the wheat head and effectively controlled the disease caused by F. graminearum. Results of this study indicate that P. chlororaphis subsp. aurantiaca Pcho10 has high potential to be developed as a biocontrol agent against F. graminearum. To our knowledge, this is the first report of the use of P. chlororaphis for the management of Fusarium head blight.

scholarly journals Screening of Durum Wheat (Triticum turgidum L. subsp. durum (Desf.) Husn.) Italian Cultivars for Susceptibility to Fusarium Head Blight Incited by Fusarium graminearum

Plants ◽  
2020 ◽  
Vol 10 (1) ◽  
pp. 68
Author(s):  
Gaetano Bentivenga ◽  
Alfio Spina ◽  
Karim Ammar ◽  
Maria Allegra ◽  
Santa Olga Cacciola
Keyword(s):  
Durum Wheat ◽  
Fusarium Head Blight ◽  
Fusarium Graminearum ◽  
Triticum Turgidum ◽  
Disease Incidence ◽  
Morphological Characteristics ◽  
Pcr Amplification ◽  
Conidial Suspension ◽  
Head Blight ◽  
Italian Origin

In 2009, a set of 35 cultivars of durum wheat (Triticum turgidum L. subsp. durum (Desf.) Husn.) of Italian origin was screened for fusarium head blight (FHB) susceptibility at CIMMYT (Mexico) and in the 2019–20 cropping season, 16 of these cultivars, which had been included in the Italian National Plant Variety Register, were tested again in southern and northern Italy. Wheat cultivars were artificially inoculated during anthesis with a conidial suspension of Fusarium graminearum sensu lato using a standard spray inoculation method. Inoculum was a mixture of mono-conidial isolates sourced in the same areas where the trials were performed. Isolates had been characterized on the basis of morphological characteristics and by DNA PCR amplification using a specific primer set and then selected for their virulence and ability to produce mycotoxins. The susceptibility to FHB was rated on the basis of the disease severity, disease incidence and FHB index. Almost all of the tested cultivars were susceptible or very susceptible to FHB with the only exception of “Duprì”, “Tiziana” and “Dylan” which proved to be moderately susceptible. The susceptibility to FHB was inversely correlated with the plant height and flowering biology, the tall and the late heading cultivars being less susceptible.

Near-infrared versus visual sorting of Fusarium-damaged kernels in winter wheat

2008 ◽  
Vol 88 (6) ◽  
pp. 1087-1089 ◽  
Author(s):  
Stephen N Wegulo ◽  
Floyd E Dowell
Keyword(s):  
Quality Assurance ◽  
Winter Wheat ◽  
Fusarium Head Blight ◽  
Key Words ◽  
Fusarium Graminearum ◽  
Near Infrared ◽  
Strongly Correlated ◽  
Head Blight ◽  
Rater Reliability ◽  
Key Words Wheat

Fusarium head blight (scab) of wheat, caused by Fusarium graminearum, often results in shriveled and/or discolored kernels, which are referred to as Fusarium-damaged kernels (FDK). FDK is a major grain grading factor and therefore is routinely determined for purposes of quality assurance. Measurement of FDK is usually done visually. Visual sorting can be laborious and is subject to inconsistencies resulting from variability in intra-rater repeatability and/or inter-rater reliability. The ability of a single-kernel near-infrared (SKNIR) system to detect FDK was evaluated by comparing FDK sorted by the system to FDK sorted visually. Visual sorting was strongly correlated with sorting by the SKNIR system (0.89 ≤ r ≤ 0.91); however, the SKNIR system had a wider range of FDK detection and was more consistent. Compared with the SKNIR system, visual raters overestimated FDK in samples with a low percentage of Fusarium-damaged grain and underestimated FDK in samples with a high percentage of Fusarium-damaged grain. Key words: Wheat, Fusarium head blight, Fusarium-damaged kernels, single-kernel near-infrared

scholarly journals Survival of Fusarium graminearum, the causal agent of Fusarium head blight. A review

2012 ◽  
Vol 33 (1) ◽  
pp. 97-111 ◽  
Author(s):  
Johann Leplat ◽  
Hanna Friberg ◽  
Muhammad Abid ◽  
Christian Steinberg
Keyword(s):  
Fusarium Head Blight ◽  
Fusarium Graminearum ◽  
Causal Agent ◽  
Head Blight

Impact of the biofungicide tetramycin on the development of Fusarium head blight, grain yield and deoxynivalenol accumulation in wheat

2020 ◽  
Vol 13 (2) ◽  
pp. 235-246
Author(s):  
W.Q. Shi ◽  
L.B. Xiang ◽  
D.Z. Yu ◽  
S.J. Gong ◽  
L.J. Yang
Keyword(s):  
Fusarium Head Blight ◽  
Fusarium Graminearum ◽  
Spore Germination ◽  
Field Experiments ◽  
Synergistic Effects ◽  
Field Trials ◽  
Head Blight ◽  
Mycelium Growth ◽  
Key Aspects

Fusarium graminearum causes Fusarium head blight (FHB), a devastating disease that leads to extensive yield and quality loss in wheat and barley production. Integrated pest management (IPM) is required to control this disease and biofungicides, such as tetramycin, could be a novel addition to IPM strategies. The current study investigated in vitro tetramycin toxicity in Fusarium graminearum and evaluated its effectiveness for the control of Fusarium head blight FHB. Tetramycin was shown to affect three key aspects of Fusarium pathogenicity: spore germination, mycelium growth and deoxynivalenol (DON) production. The in vitro results indicated that tetramycin had strong inhibitory activity on the mycelial growth and spore germination. Field trials indicated that tetramycin treatment resulted in a significant reduction in both the FHB disease index and the level of DON accumulation. The reduced DON content in harvested grain was correlated with the amount of Tri5 mRNA determined by qRT-PCR. Synergistic effects between tetramycin and metconazole, in both the in vitro and field experiments were found. Tetramycin could provide an alternative option to control FHB.

scholarly journals Fusarium graminearum Possesses Virulence Factors Common to Fusarium Head Blight of Wheat and Seedling Rot of Soybean but Differing in Their Impact on Disease Severity

2014 ◽  
Vol 104 (11) ◽  
pp. 1201-1207 ◽  
Author(s):  
Luca Sella ◽  
Katia Gazzetti ◽  
Carla Castiglioni ◽  
Wilhelm Schäfer ◽  
Francesco Favaron
Keyword(s):  
Fusarium Head Blight ◽  
Disease Severity ◽  
Fusarium Graminearum ◽  
Map Kinases ◽  
Early Stage ◽  
Single Gene ◽  
Crown Rot ◽  
Head Blight ◽  
Soybean Seedlings ◽  
Seedling Rot

Fusarium graminearum is a toxigenic fungal pathogen that causes Fusarium head blight (FHB) and crown rot on cereal crops worldwide. This fungus also causes damping-off and crown and root rots at the early stage of crop development in soybean cultivated in North and South America. Several F. graminearum genes were investigated for their contribution to FHB in cereals but no inherent study is reported for the dicotyledonous soybean host. In this study we determined the disease severity on soybean seedlings of five single gene disrupted mutants of F. graminearum, previously characterized in wheat spike infection. Three of these mutants are impaired on a specific function as the production of deoxynivalenol (DON, Δtri5), lipase (ΔFgl1), and xylanase (Δxyl03624), while the remaining two are MAP kinase mutants (ΔFgOS-2, Δgpmk1), which are altered in signaling pathways. The mutants that were reduced in virulence (Δtri5, ΔFgl1, and ΔFgOS-2) or are avirulent (Δgpmk1) on wheat were correspondently less virulent or avirulent in soybean seedlings, as shown by the extension of lesions and seedling lengths. The Δxyl03624 mutant was as virulent as the wild type mirroring the behavior observed in wheat. However, a different ranking of symptom severity occurred in the two hosts: the ΔFgOS-2 mutant, that infects wheat spikelets similarly to Δtri5 and ΔFgl1 mutants, provided much reduced symptoms in soybean. Differently from the other mutants, we observed that the ΔFgOS-2 mutant was several fold more sensitive to the glyceollin phytoalexin suggesting that its reduced virulence may be due to its hypersensitivity to this phytoalexin. In conclusion, lipase and DON seem important for full disease symptom development in soybean seedlings, OS-2 and Gpmk1 MAP kinases are essential for virulence, and OS-2 is involved in conferring resistance to the soybean phytoalexin.

scholarly journals Auxin as a player in the biocontrol of Fusarium head blight disease of barley and its potential as a disease control agent

2012 ◽  
Vol 12 (1) ◽  
pp. 224 ◽  
Author(s):  
Carloalberto Petti ◽  
Kathrin Reiber ◽  
Shahin S Ali ◽  
Margaret Berney ◽  
Fiona M Doohan
Keyword(s):  
Disease Control ◽  
Fusarium Head Blight ◽  
Control Agent ◽  
Head Blight ◽  
Blight Disease
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