scholarly journals Activities of Chromatin Remodeling Factors and Histone Chaperones and Their Effects in Root Apical Meristem Development

2020 ◽  
Vol 21 (3) ◽  
pp. 771
Author(s):  
Huijia Kang ◽  
Di Wu ◽  
Tianyi Fan ◽  
Yan Zhu
Keyword(s):  
Chromatin Remodeling ◽  
Apical Meristem ◽  
Plant Root ◽  
Root Apical Meristem ◽  
Histone Chaperones ◽  
Apical Meristems ◽  
Transcriptional Reprogramming ◽  
Eukaryotic Genes ◽  
Cell Proliferation And Differentiation ◽  
Meristem Development

Eukaryotic genes are packaged into dynamic but stable chromatin structures to deal with transcriptional reprogramming and inheritance during development. Chromatin remodeling factors and histone chaperones are epigenetic factors that target nucleosomes and/or histones to establish and maintain proper chromatin structures during critical physiological processes such as DNA replication and transcriptional modulation. Root apical meristems are vital for plant root development. Regarding the well-characterized transcription factors involved in stem cell proliferation and differentiation, there is increasing evidence of the functional implications of epigenetic regulation in root apical meristem development. In this review, we focus on the activities of chromatin remodeling factors and histone chaperones in the root apical meristems of the model plant species Arabidopsis and rice.

The REVOLUTA gene is necessary for apical meristem development and for limiting cell divisions in the leaves and stems of Arabidopsis thaliana

Development ◽  
1995 ◽  
Vol 121 (9) ◽  
pp. 2723-2735 ◽  
Author(s):  
P.B. Talbert ◽  
H.T. Adler ◽  
D.W. Parks ◽  
L. Comai
Keyword(s):  
Arabidopsis Thaliana ◽  
Apical Meristem ◽  
Leaf Growth ◽  
Leaf Axil ◽  
Axillary Shoots ◽  
Apical Meristems ◽  
Cell Divisions ◽  
Meristem Development ◽  
Cell Layers ◽  
Recessive Mutant

The form of seed plants is determined by the growth of a number of meristems including apical meristems, leaf meristems and cambium layers. We investigated five recessive mutant alleles of a gene REVOLUTA that is required to promote the growth of apical meristems and to limit cell division in leaves and stems of Arabidopsis thaliana. REVOLUTA maps to the bottom of the fifth chromosome. Apical meristems of both paraclades (axillary shoots) and flowers of revoluta mutants frequently fail to complete normal development and form incomplete or abortive structures. The primary shoot apical meristem sometimes also arrests development early. Leaves, stems and floral organs, in contrast, grow abnormally large. We show that in the leaf epidermis this extra growth is due to extra cell divisions in the leaf basal meristem. The extent of leaf growth is negatively correlated with the development of a paraclade in the leaf axil. The thickened stems contain extra cell layers, arranged in rings, indicating that they may result from a cambium-like meristem. These results suggest that the REVOLUTA gene has a role in regulating the relative growth of apical and non-apical meristems in Arabidopsis.

The iRoCS Toolbox - 3D analysis of the plant root apical meristem at cellular resolution

2014 ◽  
Vol 77 (5) ◽  
pp. 806-814 ◽  
Author(s):  
Thorsten Schmidt ◽  
Taras Pasternak ◽  
Kun Liu ◽  
Thomas Blein ◽  
Dorothée Aubry-Hivet ◽  
...  
Keyword(s):  
Apical Meristem ◽  
Plant Root ◽  
Root Apical Meristem ◽  
3D Analysis ◽  
Cellular Resolution

Critical level of radiation damage of root apical meristem and mechanisms for its recovery in Pisum sativum L.

2011 ◽  
Vol 45 (1) ◽  
pp. 18-26 ◽  
Author(s):  
E. A. Kravets ◽  
A. N. Mikheev ◽  
L. G. Ovsyannikova ◽  
D. M. Grodzinsky
Keyword(s):  
Pisum Sativum ◽  
Radiation Damage ◽  
Apical Meristem ◽  
Critical Level ◽  
Root Apical Meristem ◽  
Pisum Sativum L

scholarly journals Sound Waves Promote Arabidopsis thaliana Root Growth by Regulating Root Phytohormone Content

2021 ◽  
Vol 22 (11) ◽  
pp. 5739
Author(s):  
Joo Yeol Kim ◽  
Hyo-Jun Lee ◽  
Jin A Kim ◽  
Mi-Jeong Jeong
Keyword(s):  
Arabidopsis Thaliana ◽  
Cell Division ◽  
Root Growth ◽  
Apical Meristem ◽  
Cell Number ◽  
Root Apical Meristem ◽  
Control Group ◽  
Auxin Signaling ◽  
Ethylene Signaling ◽  
Sound Waves

Sound waves affect plants at the biochemical, physical, and genetic levels. However, the mechanisms by which plants respond to sound waves are largely unknown. Therefore, the aim of this study was to examine the effect of sound waves on Arabidopsis thaliana growth. The results of the study showed that Arabidopsis seeds exposed to sound waves (100 and 100 + 9k Hz) for 15 h per day for 3 day had significantly longer root growth than that in the control group. The root length and cell number in the root apical meristem were significantly affected by sound waves. Furthermore, genes involved in cell division were upregulated in seedlings exposed to sound waves. Root development was affected by the concentration and activity of some phytohormones, including cytokinin and auxin. Analysis of the expression levels of genes regulating cytokinin and auxin biosynthesis and signaling showed that cytokinin and ethylene signaling genes were downregulated, while auxin signaling and biosynthesis genes were upregulated in Arabidopsis exposed to sound waves. Additionally, the cytokinin and auxin concentrations of the roots of Arabidopsis plants increased and decreased, respectively, after exposure to sound waves. Our findings suggest that sound waves are potential agricultural tools for improving crop growth performance.

scholarly journals A Systems Biology Approach to Identify Essential Epigenetic Regulators for Specific Biological Processes in Plants

Plants ◽  
2021 ◽  
Vol 10 (2) ◽  
pp. 364
Author(s):  
Rachel M. McCoy ◽  
Russell Julian ◽  
Shoban R. V. Kumar ◽  
Rajeev Ranjan ◽  
Kranthi Varala ◽  
...  
Keyword(s):  
Machine Learning ◽  
Network Inference ◽  
Root Apical Meristem ◽  
Environmental Cues ◽  
Biological Processes ◽  
Learning Network ◽  
Meristem Development ◽  
Epigenetic Regulator ◽  
Gene Regulatory ◽  
Epigenetic Regulators

Upon sensing developmental or environmental cues, epigenetic regulators transform the chromatin landscape of a network of genes to modulate their expression and dictate adequate cellular and organismal responses. Knowledge of the specific biological processes and genomic loci controlled by each epigenetic regulator will greatly advance our understanding of epigenetic regulation in plants. To facilitate hypothesis generation and testing in this domain, we present EpiNet, an extensive gene regulatory network (GRN) featuring epigenetic regulators. EpiNet was enabled by (i) curated knowledge of epigenetic regulators involved in DNA methylation, histone modification, chromatin remodeling, and siRNA pathways; and (ii) a machine-learning network inference approach powered by a wealth of public transcriptome datasets. We applied GENIE3, a machine-learning network inference approach, to mine public Arabidopsis transcriptomes and construct tissue-specific GRNs with both epigenetic regulators and transcription factors as predictors. The resultant GRNs, named EpiNet, can now be intersected with individual transcriptomic studies on biological processes of interest to identify the most influential epigenetic regulators, as well as predicted gene targets of the epigenetic regulators. We demonstrate the validity of this approach using case studies of shoot and root apical meristem development.

scholarly journals Arabidopsis Argonaute10 Specifically Sequesters miR166/165 to Regulate Shoot Apical Meristem Development

Cell ◽  
2011 ◽  
Vol 145 (2) ◽  
pp. 242-256 ◽  
Author(s):  
Hongliang Zhu ◽  
Fuqu Hu ◽  
Ronghui Wang ◽  
Xin Zhou ◽  
Sing-Hoi Sze ◽  
...  
Keyword(s):  
Shoot Apical Meristem ◽  
Apical Meristem ◽  
Meristem Development

scholarly journals AT-HOOK MOTIF NUCLEAR LOCALISED PROTEIN 18 as a Novel Modulator of Root System Architecture

2020 ◽  
Author(s):  
Marek Šírl ◽  
Tereza Šnajdrová ◽  
Dolores Gutiérrez-Alanís ◽  
Joseph G. Dubrovsky ◽  
Jean Phillipe Vielle-Calzada ◽  
...  
Keyword(s):  
Root System ◽  
System Architecture ◽  
Lateral Root ◽  
Apical Meristem ◽  
Lateral Roots ◽  
Primary Root ◽  
Root System Architecture ◽  
Root Apical Meristem ◽  
Root Initiation ◽  
Lateral Root Initiation

The AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN (AHL) gene family encodes embryophyte-specific nuclear proteins with DNA binding activity. They modulate gene expression and affect various developmental processes in plants. We identify AHL18 (At3G60870) as a developmental modulator of root system architecture and growth. AHL18 regulates the length of the proliferation domain and number of dividing cells in the root apical meristem and thereby, cell production. Both primary root growth and lateral root development respond according to AHL18 transcription level. The ahl18 knock-out plants show reduced root systems due to a shorter primary root and a lower number of lateral roots. This change results from a higher number of arrested and non-developing lateral root primordia (LRP) rather than from decreased initiation. Overexpression of AHL18 results in a more extensive root system, longer primary roots, and increased density of lateral root initiation events. Formation of lateral roots is affected during the initiation of LRP and later development. AHL18 regulate root apical meristem activity, lateral root initiation and emergence, which is in accord with localization of its expression.

scholarly journals Agronomic Performance and Flowering Behavior in Response to Photoperiod and Vernalization in Barley (Hordeum vulgare L.) Genotypes with Contrasting Drought Tolerance Behavior

2021 ◽  
Author(s):  
Jamal Abu-Elenein ◽  
Rabea Al-Sayaydeh ◽  
Zahera Akkeh ◽  
Zakaria Al-Ajlouni ◽  
AbdRaheem A. Al-Bawalize ◽  
...  
Keyword(s):  
Drought Tolerance ◽  
Shoot Apical Meristem ◽  
Apical Meristem ◽  
Agronomic Performance ◽  
Short Day ◽  
Drought Tolerant ◽  
Long Day ◽  
Meristem Development ◽  
Rainfed Conditions ◽  
Barley Genotypes

Abstract Background In barley, flowering behavior is a highly regulated and complex process where the appropriate matching of reproductive development with seasonal variation in water availability confer barley adaptation to different environments. In this study, the role of variation in flowering time and drought tolerance in four selected barley genotypes was studied under field and controlled conditions. For this purpose, field trials were conducted for two consecutive seasons at three diverse environments where the studied genotypes were subjected to either rainfed conditions or rainfed plus supplementary irrigation under two different sowing dates. Furthermore, reproductive meristem development in two selected barley genotypes, Rum (drought tolerant) and Steptoe (drought-sensitive) was also assessed in response to both vernalization and water stress under two different photoperiod conditions.Results Variation in the number of days to heading was more pronounced under rainfed conditions than under well water conditions. For agronomic performance, Rum was superior under all tested environments, which assure its general adaptability to multiple environments, while Steptoe was the poorest. The transition to reproductive meristem was faster under vernalized long-day conditions as compared to vernalized short-day conditions. The progress of shoot apical meristem development and heading under long-day conditions was significantly faster in Rum than that of Steptoe. A clear effect of drought stress was observed on shoot apical meristem development in Steptoe. Under short-day conditions, vernalized Rum plants subjected to water deficit showed an advanced meristem development stage a significant earlier HD when compared with non-stressed plants. This early flowering behavior in stressed Rum plants under short-day conditions was accompanied by higher gene expression of the Vrn-H1 gene. Conclusion In conclusion, the integration of vernalization and photoperiod signals in drought-tolerant barley genotypes is associated with early flowering behavior and higher productivity in dry environments.

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