scholarly journals Three-Source Partitioning of Methane Emissions from Paddy Soil: Linkage to Methanogenic Community Structure

2019 ◽  
Vol 20 (7) ◽  
pp. 1586 ◽  
Author(s):  
Jing Yuan ◽  
Xiaomei Yi ◽  
Linkui Cao
Keyword(s):  
Community Structure ◽  
Paddy Soil ◽  
Organic Fertilizer ◽  
Fertilizer Treatment ◽  
Rice Soil ◽  
Organic Fertilization ◽  
Soil C ◽  
Methanogenic Community ◽  
Ch4 Emissions ◽  
Native Soil

Identification of the carbon (C) sources of methane (CH4) and methanogenic community structures after organic fertilization may provide a better understanding of the mechanism that regulate CH4 emissions from paddy soils. Based on our previous field study, a pot experiment with isotopic 13C labelling was designed in this study. The objective was to investigate the main C sources for CH4 emissions and the key environmental factor with the application of organic fertilizer in paddies. Results indicated that 28.6%, 64.5%, 0.4%, and 6.5% of 13C was respectively distributed in CO2, the plants, soil, and CH4 at the rice tillering stage. In total, organically fertilized paddy soil emitted 3.51 kg·CH4 ha−1 vs. 2.00 kg·CH4 ha−1 for the no fertilizer treatment. Maximum CH4 fluxes from organically fertilized (0.46 mg·m−2·h−1) and non-fertilized (0.16 mg·m−2·h−1) soils occurred on day 30 (tillering stage). The total percentage of CH4 emissions derived from rice photosynthesis C was 49%, organic fertilizer C < 0.34%, and native soil C > 51%. Therefore, the increased CH4 emissions from paddy soil after organic fertilization were mainly derived from native soil and photosynthesis. The 16S rRNA sequencing showed Methanosarcina (64%) was the dominant methanogen in paddy soil. Organic fertilization increased the relative abundance of Methanosarcina, especially in rhizosphere. Additionally, Methanosarcina sp. 795 and Methanosarcina sp. 1H1 co-occurred with Methanobrevibacter sp. AbM23, Methanoculleus sp. 25XMc2, Methanosaeta sp. HA, and Methanobacterium sp. MB1. The increased CH4 fluxes and labile methanogenic community structure in organically fertilized rice soil were primarily due to the increased soil C, nitrogen, potassium, phosphate, and acetate. These results highlight the contributions of native soil- and photosynthesis-derived C in paddy soil CH4 emissions, and provide basis for more complex investigations of the pathways involved in ecosystem CH4 processes.

scholarly journals Pakchoi Antioxidant Improvement and Differential Rhizobacterial Community Composition under Organic Fertilization

2019 ◽  
Vol 11 (8) ◽  
pp. 2424
Author(s):  
Jianli Liao ◽  
Jun Ye ◽  
Yun Liang ◽  
Muhammad Khalid ◽  
Danfeng Huang
Keyword(s):  
Community Structure ◽  
Plant Biomass ◽  
Inorganic Nitrogen ◽  
Organic Fertilizer ◽  
Chemical Fertilizer ◽  
Organic Fertilizers ◽  
Organic N ◽  
Soil Conditions ◽  
Fertilizer Treatment ◽  
Organic Fertilization

A high level of antioxidants in organic-produced vegetables has been attributed to soil conditions; however, little is known about the relationships between antioxidants and rhizobacteria under different fertilization treatments. A pot trial for pakchoi (Brassica campestris ssp. chinensis L.) was conducted under greenhouse conditions with: (1) control; (2) chemical fertilizer; and (3) organic fertilizer. The responses of the plant, soil properties, and rhizobacterial community were measured after 45 days of cultivation. Fertilization increased soil nutrient levels and pakchoi productivity and the reshaped rhizobacterial community structure, while no differences in rhizobacterial abundance and total diversity were observed. Generally, most plant antioxidants were negatively correlated with inorganic nitrogen (N) and positively correlated to organic N in soil. The genera of Arthrospira and Acutodesmus contained differential rhizobacteria under chemical fertilizer treatment, which are known as copiotrophs. In addition, the addition of a chemical fertilizer may stimulate organic substance turnover by the enrichment of organic compound degraders (e.g., Microbacterium and Chitinophaga) and the promotion of predicted functional pathways involved in energy metabolism. Several beneficial rhizobacteria were associated with organic fertilizer amended rhizosphere including the genera Bacillus, Mycobacterium, Actinomycetospora, and Frankia. Furthermore, Bacillus spp. were positively correlated with plant biomass and phenolic acid. Moreover, predictive functional profiles of the rhizobacterial community involved in amino acid metabolism and lipid metabolism were significantly increased under organic fertilization, which were positively correlated with plant antioxidant activity. Overall, our study suggests that the short-term application of chemical and organic fertilizers reshapes the rhizobacterial community structure, and such changes might contribute to the plant’s performance.

scholarly journals Advantages of grass-legume mixture for improvement of crop growth and reducing potential nitrogen loss in a boreal climate

2019 ◽  
Vol 28 (4) ◽  
Author(s):  
Honghong Li ◽  
Petri Penttinen ◽  
Hannu Mikkola ◽  
Kristina Lindström
Keyword(s):  
Trifolium Pratense ◽  
Nitrogen Loss ◽  
Organic Fertilizer ◽  
C:N Ratio ◽  
Red Clover ◽  
Phleum Pratense ◽  
Fertilizer Treatment ◽  
Forage Production ◽  
Soil Dna ◽  
Soil C

A three-year field experiment was established to assess intercropping for sustainable forage production in Finland. In split-plot design, fertilizer treatment with unfertilized control, organic fertilizer, and synthetic fertilizer was the main plot factor, and crop treatment with fallow, red clover (Trifolium pratense), timothy (Phleum pratense), and a mixture of red clover and timothy was the sub-plot factor. Dry matter, carbon and nitrogen yields in mixture plots were highest with relatively high N% and the optimum C:N ratio (p < 0.05). Fertilization increased annual yields of mixture and timothy but not that of red clover. Soil NO3-N changed over time (p < 0.05) and was highest in fallow, followed by red clover, mixture, and timothy (p < 0.05), and the decrease during late growing season was smaller in the mixture and timothy plots. At the end of the experiment, soil C/NO3-N ratio was higher in timothy and mixture while lower in red clover and fallow plots (p < 0.05), and the relationship between soil DNA and NO3-N content may indicate that the potential nitrogen loss was lower in mixture and timothy than that in fallow and red clover plots.

scholarly journals Organic Fertilization and Its Effect on Development of Sweet Pepper Transplants

HortScience ◽  
2012 ◽  
Vol 47 (2) ◽  
pp. 198-204 ◽  
Author(s):  
Valérie Gravel ◽  
Martine Dorais ◽  
Claudine Ménard
Keyword(s):  
Microbial Activity ◽  
Organic Liquid ◽  
Organic Fertilizer ◽  
Nutrient Release ◽  
Sweet Pepper ◽  
Organic Fertilizers ◽  
Fertilizer Treatment ◽  
Sink Strength ◽  
Organic Fertilization ◽  
Growing Medium

Organically grown greenhouse sweet pepper crops, as is the case with most year-around greenhouse crops, rely on pre-grown transplants. Production of adequately balanced (source and sink strength potential) healthy organic sweet pepper transplants is a challenge and is often related to early and total harvested yields. Liquid and/or solid organic fertilizers for greenhouse sweet pepper transplants were compared with a conventional liquid fertilizer. Transplants were grown under greenhouse conditions and inoculated, or not, with a beneficial microbial agent, Trichoderma harzianum Rifai, strain KRL-AG2 (Rootshield®). Medium respiration (CO2 efflux) and fluorescein diacetate (FDA) hydrolysis analysis showed a higher microbial activity in the liquid organic fertilizer treatment. Higher microbial activity was observed after 10 weeks than at 5 weeks after transplanting. Transplant development was greater in the liquid conventional fertilizer treatment compared with the two organic treatments. Transplants that received liquid organic fertilizer had greater development compared with transplants that only received water in addition to the initial solid fertilizer. Organic amendment mineralization did not completely fulfill transplant nutrient requirement compared with conventional transplants. Solid fertilization in the growing medium affected plant growth during the first 5 weeks but not after 10 weeks after transplanting. Solid and liquid organic fertilizers at a higher concentration should be provided to reach a similar transplant development because conventional seedlings or other slow-release sources of solid amendments should be added to the growing medium to keep an adequate and constant nutrient release. Providing a beneficial agent to the organic growing medium increased its biological activity but had no effect on seedling growth during this study. Solid organic fertilization (1600 mL·m−3 of shrimp meal with 50 mL·m−3 of kelp meal) combined with an organic liquid fertilization should be used in combination with inoculation with T. harzianum to obtain high-quality organic sweet pepper transplants.

Effect of long-term fertilization on archaeal community structure in cal-careous purplish paddy soil

2011 ◽  
Vol 19 (3) ◽  
pp. 369-376
Author(s):  
Gu Yunfu ◽  
Zhang Xiaoping ◽  
Tu Shihua ◽  
Lindström Kristina
Keyword(s):  
Community Structure ◽  
Paddy Soil ◽  
Archaeal Community

scholarly journals Effects of Organic Fertilizers on the Soil Microorganisms Responsible for N2O Emissions: A Review

2021 ◽  
Vol 9 (5) ◽  
pp. 983
Author(s):  
Cristina Lazcano ◽  
Xia Zhu-Barker ◽  
Charlotte Decock
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Best Management Practices ◽  
Management Practices ◽  
Organic Fertilizers ◽  
N2o Emissions ◽  
Soil C ◽  
Best Management ◽  
C Stocks ◽  
Denitrifying Microorganisms

The use of organic fertilizers constitutes a sustainable strategy to recycle nutrients, increase soil carbon (C) stocks and mitigate climate change. Yet, this depends largely on balance between soil C sequestration and the emissions of the potent greenhouse gas nitrous oxide (N2O). Organic fertilizers strongly influence the microbial processes leading to the release of N2O. The magnitude and pattern of N2O emissions are different from the emissions observed from inorganic fertilizers and difficult to predict, which hinders developing best management practices specific to organic fertilizers. Currently, we lack a comprehensive evaluation of the effects of OFs on the function and structure of the N cycling microbial communities. Focusing on animal manures, here we provide an overview of the effects of these organic fertilizers on the community structure and function of nitrifying and denitrifying microorganisms in upland soils. Unprocessed manure with high moisture, high available nitrogen (N) and C content can shift the structure of the microbial community, increasing the abundance and activity of nitrifying and denitrifying microorganisms. Processed manure, such as digestate, compost, vermicompost and biochar, can also stimulate nitrifying and denitrifying microorganisms, although the effects on the soil microbial community structure are different, and N2O emissions are comparatively lower than raw manure. We propose a framework of best management practices to minimize the negative environmental impacts of organic fertilizers and maximize their benefits in improving soil health and sustaining food production systems. Long-term application of composted manure and the buildup of soil C stocks may contribute to N retention as microbial or stabilized organic N in the soil while increasing the abundance of denitrifying microorganisms and thus reduce the emissions of N2O by favoring the completion of denitrification to produce dinitrogen gas. Future research using multi-omics approaches can be used to establish key biochemical pathways and microbial taxa responsible for N2O production under organic fertilization.

scholarly journals An update on image forming methods: structure analysis and Gestalt evaluation of images from rocket lettuce with shading, N supply, organic or mineral fertilization, and biodynamic preparations

2021 ◽  
Author(s):  
Miriam Athmann ◽  
Roya Bornhütter ◽  
Nicolaas Busscher ◽  
Paul Doesburg ◽  
Uwe Geier ◽  
...  
Keyword(s):  
Copper Chloride ◽  
Organic Fertilizer ◽  
Structural Features ◽  
Fertilizer Treatment ◽  
Friedman Test ◽  
Mineral Fertilization ◽  
Cohen’S Kappa ◽  
N Supply ◽  
Cohen's Kappa ◽  
Forming Methods

AbstractIn the image forming methods, copper chloride crystallization (CCCryst), capillary dynamolysis (CapDyn), and circular chromatography (CChrom), characteristic patterns emerge in response to different food extracts. These patterns reflect the resistance to decomposition as an aspect of resilience and are therefore used in product quality assessment complementary to chemical analyses. In the presented study, rocket lettuce from a field trial with different radiation intensities, nitrogen supply, biodynamic, organic and mineral fertilization, and with or without horn silica application was investigated with all three image forming methods. The main objective was to compare two different evaluation approaches, differing in the type of image forming method leading the evaluation, the amount of factors analyzed, and the deployed perceptual strategy: Firstly, image evaluation of samples from all four experimental factors simultaneously by two individual evaluators was based mainly on analyzing structural features in CapDyn (analytical perception). Secondly, a panel of eight evaluators applied a Gestalt evaluation imbued with a kinesthetic engagement of CCCryst patterns from either fertilization treatments or horn silica treatments, followed by a confirmatory analysis of individual structural features. With the analytical approach, samples from different radiation intensities and N supply levels were identified correctly in two out of two sample sets with groups of five samples per treatment each (Cohen’s kappa, p = 0.0079), and the two organic fertilizer treatments were differentiated from the mineral fertilizer treatment in eight out of eight sample sets with groups of three manure and two minerally fertilized samples each (Cohen’s kappa, p = 0.0048). With the panel approach based on Gestalt evaluation, biodynamic fertilization was differentiated from organic and mineral fertilization in two out of two exams with 16 comparisons each (Friedman test, p < 0.001), and samples with horn silica application were successfully identified in two out of two exams with 32 comparisons each (Friedman test, p < 0.001). Further research will show which properties of the food decisive for resistance to decomposition are reflected by analytical and Gestalt criteria, respectively, in CCCryst and CapDyn images.

scholarly journals Protists as main indicators and determinants of plant performance

Microbiome ◽  
2021 ◽  
Vol 9 (1) ◽  
Author(s):  
Sai Guo ◽  
Wu Xiong ◽  
Xinnan Hang ◽  
Zhilei Gao ◽  
Zixuan Jiao ◽  
...  
Keyword(s):  
Plant Growth ◽  
Organic Fertilizer ◽  
Agricultural Practices ◽  
Plant Performance ◽  
Organic Fertilization ◽  
Plant Yield ◽  
Growing Seasons ◽  
Beneficial Microorganisms ◽  
Plant Growth Promoting ◽  
Plant Growth Promoting Microbes

Abstract Background Microbiomes play vital roles in plant health and performance, and the development of plant beneficial microbiomes can be steered by organic fertilizer inputs. Especially well-studied are fertilizer-induced changes on bacteria and fungi and how changes in these groups alter plant performance. However, impacts on protist communities, including their trophic interactions within the microbiome and consequences on plant performance remain largely unknown. Here, we tracked the entire microbiome, including bacteria, fungi, and protists, over six growing seasons of cucumber under different fertilization regimes (conventional, organic, and Trichoderma bio-organic fertilization) and linked microbial data to plant yield to identify plant growth-promoting microbes. Results Yields were higher in the (bio-)organic fertilization treatments. Soil abiotic conditions were altered by the fertilization regime, with the prominent effects coming from the (bio-)organic fertilization treatments. Those treatments also led to the pronounced shifts in protistan communities, especially microbivorous cercozoan protists. We found positive correlations of these protists with plant yield and the density of potentially plant-beneficial microorganisms. We further explored the mechanistic ramifications of these relationships via greenhouse experiments, showing that cercozoan protists can positively impact plant growth, potentially via interactions with plant-beneficial microorganisms including Trichoderma, the biological agent delivered by the bio-fertilizer. Conclusions We show that protists may play central roles in stimulating plant performance through microbiome interactions. Future agricultural practices might aim to specifically enhance plant beneficial protists or apply those protists as novel, sustainable biofertilizers.

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