scholarly journals Modeling Insolation, Multi-Spectral Imagery and LiDAR Point-Cloud Metrics to Predict Plant Diversity in a Temperate Montane Forest

Geographies ◽  
2021 ◽  
Vol 1 (2) ◽  
pp. 79-103
Author(s):  
Paul Christian Dunn ◽  
Leonhard Blesius

Incident solar radiation (insolation) passing through the forest canopy to the ground surface is either absorbed or scattered. This phenomenon, known as radiation attenuation, is measured using the extinction coefficient (K). The amount of radiation reaching the ground surface of a given site is effectively controlled by the canopy’s surface and structure, determining its suitability for plant species. Menhinick’s and Simpson’s biodiversity indexes were selected as spatially explicit response variables for the regression equation using canopy structure metrics as predictors. Independent variables include modeled area solar radiation, LiDAR-derived canopy height, effective leaf area index data derived from multi-spectral imagery and canopy strata metrics derived from LiDAR point-cloud data. The results support the hypothesis that (1) canopy surface and strata variability may be associated with understory species diversity due to radiation attenuation and the resultant habitat partitioning and that, (2) such a model can predict both this relationship and biodiversity clustering. The study data yielded significant correlations between predictor and response variables and were used to produce a multiple–linear model comprising canopy relief, the texture of heights, and vegetation density to predict understory plant diversity. When analyzed for spatial autocorrelation, the predicted biodiversity data exhibited non-random spatial continuity.

Author(s):  
Paul Christian Dunn ◽  
Leonhard Blesius

Incident solar radiation (insolation) passing through the forest canopy to the ground surface is either absorbed or scattered. This phenomenon, known as radiation attenuation, is measured using the extinction coefficient (K). The amount of radiation at the ground surface of a given site is effectively controlled by the canopy’s surface and structure, determining its suitability for plant species.Menhinick’s and Simpson biodiversity indexes were selected as spatially explicit response variables for the regression equation using canopy structure metrics as predictors. Independent variables include modeled area solar radiation, LiDAR derived canopy height, effective leaf area index data derived from multi-spectral imagery, and canopy strata metrics derived from LiDAR point-cloud data. The results support the hypothesis that, 1.) canopy surface and strata variability may be associated with understory species diversity due to habitat partitioning and radiation attenuation, and that, 2.) such a model can predict both this relationship and biodiversity clustering.The study data yielded significant correlations between predictor and response variables and was used to produce a multiple-linear model comprising canopy relief, texture of heights, and vegetation density to predict understory plant diversity. When analyzed for spatial autocorrelation, the predicted biodiversity data exhibited non-random spatial continuity.


2021 ◽  
Vol 13 (4) ◽  
pp. 803
Author(s):  
Lingchen Lin ◽  
Kunyong Yu ◽  
Xiong Yao ◽  
Yangbo Deng ◽  
Zhenbang Hao ◽  
...  

As a key canopy structure parameter, the estimation method of the Leaf Area Index (LAI) has always attracted attention. To explore a potential method to estimate forest LAI from 3D point cloud at low cost, we took photos from different angles of the drone and set five schemes (O (0°), T15 (15°), T30 (30°), OT15 (0° and 15°) and OT30 (0° and 30°)), which were used to reconstruct 3D point cloud of forest canopy based on photogrammetry. Subsequently, the LAI values and the leaf area distribution in the vertical direction derived from five schemes were calculated based on the voxelized model. Our results show that the serious lack of leaf area in the middle and lower layers determines that the LAI estimate of O is inaccurate. For oblique photogrammetry, schemes with 30° photos always provided better LAI estimates than schemes with 15° photos (T30 better than T15, OT30 better than OT15), mainly reflected in the lower part of the canopy, which is particularly obvious in low-LAI areas. The overall structure of the single-tilt angle scheme (T15, T30) was relatively complete, but the rough point cloud details could not reflect the actual situation of LAI well. Multi-angle schemes (OT15, OT30) provided excellent leaf area estimation (OT15: R2 = 0.8225, RMSE = 0.3334 m2/m2; OT30: R2 = 0.9119, RMSE = 0.1790 m2/m2). OT30 provided the best LAI estimation accuracy at a sub-voxel size of 0.09 m and the best checkpoint accuracy (OT30: RMSE [H] = 0.2917 m, RMSE [V] = 0.1797 m). The results highlight that coupling oblique photography and nadiral photography can be an effective solution to estimate forest LAI.


2019 ◽  
Vol 11 (15) ◽  
pp. 1791 ◽  
Author(s):  
Ali Rouzbeh Kargar ◽  
Richard MacKenzie ◽  
Gregory P. Asner ◽  
Jan van Aardt

Forests are an important part natural ecosystems, by for example providing food, fiber, habitat, and biodiversity, all of which contribute to stable natural systems. Assessing and modeling the structure and characteristics of forests, e.g., Leaf Area Index (LAI), volume, biomass, etc., can lead to a better understanding and management of these resources. In recent years, Terrestrial Laser Scanning (TLS) has been recognized as a tool that addresses many of the limitations of manual and traditional forest data collection methods. In this study, we propose a density-based approach for estimating the LAI in a structurally-complex forest environment, which contains variable and diverse structural attributes, e.g., non-circular stem forms, dense canopy and below-canopy vegetation cover, and a diverse species composition. In addition, 242 TLS scans were collected using a portable low-cost scanner, the Compact Biomass Lidar (CBL), in the Hawaii Volcanoes National Park (HAVO), Hawaii Island, USA. LAI also was measured for 242 plots in the site, using an AccuPAR LP-80 ceptometer. The first step after cleaning the point cloud involved detecting the higher forest canopy in the light detection and ranging (lidar) point clouds, using normal change rate assessment. We then estimated Leaf Area Density (LAD), using a voxel-based approach, and divided the canopy point cloud into five layers in the Z (vertical) direction. These five layers subsequently were divided into voxels in the X direction, where the size of these voxels were obtained based on inter-quartile analysis and the number of points in each voxel. We hypothesized that the intensity returned to the lidar system from woody materials, like branches, would be higher than from leaves, due to the liquid water absorption feature of the leaves and higher reflectance for woody material at the 905 nm laser wavelength. We also differentiated between foliar and woody materials using edge detection in the images from projected point clouds and evaluated the density of these regions to support our hypothesis. Density of points, or the number of points divided by the volume of a grid, in a 3D grid size of 0.1 m, was calculated for each of the voxels. The grid size was determined by investigating the size of the branches in the lower portion of the canopy. Subsequently, we fitted a Kernel Density Estimator (KDE) to these values, with the threshold set based on half of the area under the curve in each of the density distributions. All the grids with a density below the threshold were labeled as leaves, while those grids above the threshold were identified as non-leaves. Finally, we modeled LAI using the point densities derived from the TLS point clouds and the listed analysis steps. This model resulted in an R 2 value of 0.88. We also estimated the LAI directly from lidar data using the point densities and calculating LAD, which is defined as the total one-sided leaf area per unit volume. LAI can be obtained as the sum of the LAD values in all the voxels. The accuracy of LAI estimation was 90%, with an RMSE value of 0.31, and an average overestimation of 9 % in TLS-derived LAI, when compared to field-measured LAI. Algorithm performance mainly was affected by the vegetation density and complexity of the canopy structures. It is worth noting that, since the LAI values cannot be considered spatially independent throughout all the plots in this site, we performed semivariogram analysis on the field-measured LAI data. This analysis showed that the LAI values can be assumed to be independent in plots that are at least 30 m apart. As a result, we divided the data into six subsets in which the plots were 30 m spaced. The R 2 values for these subsets, based on modeling of the field-measured LAI using leaf point density values, ranged between 0.84–0.96. The results bode well for using this method for efficient, automatic, and accurate/precise estimation of LAI values in complex forest environments, using a low-cost, rapid-scan TLS.


2019 ◽  
Vol 11 (7) ◽  
pp. 889 ◽  
Author(s):  
Wenjian Ni ◽  
Jiachen Dong ◽  
Guoqing Sun ◽  
Zhiyu Zhang ◽  
Yong Pang ◽  
...  

Applications of stereo imagery acquired by cameras onboard unmanned aerial vehicles (UAVs) as practical forest inventory tools are hindered by the unavailability of ground surface elevation. It is still a challenging issue to remove the elevation of ground surface in leaf-on stereo imagery to extract forest canopy height without the help of lidar data. This study proposed a method for the extraction of forest canopy height through the synthesis of UAV stereo imagery of leaf-on and leaf-off, and further demonstrated that the extracted forest canopy height could be used for the inventory of deciduous forest aboveground biomass (AGB). The points cloud of the leaf-on and leaf-off stereo imagery was firstly extracted by an algorithm of structure from motion (SFM) using the same ground control points (GCP). The digital surface model (DSM) was produced by rasterizing the point cloud of UAV leaf-on. The point cloud of UAV leaf-off was processed by iterative median filtering to remove vegetation points, and the digital terrain model (DTM) was generated by the rasterization of the filtered point cloud. The mean canopy height model (MCHM) was derived from the DSM subtracted by the DTM (i.e., DSM-DTM). Forest AGB maps were generated using models developed based on the MCHM and sampling plots of forest AGB and were evaluated by those of lidar. Results showed that forest AGB maps from UAV stereo imagery were highly correlated with those from lidar data with R2 higher than 0.94 and RMSE lower than 10.0 Mg/ha (i.e., relative RMSE 18.8%). These results demonstrated that UAV stereo imagery could be used as a practical inventory tool for deciduous forest AGB.


Author(s):  
Keisuke YOSHIDA ◽  
Shiro MAENO ◽  
Syuhei OGAWA ◽  
Sadayuki ISEKI ◽  
Ryosuke AKOH

2021 ◽  
pp. 1-10
Author(s):  
Min Huang ◽  
Zui Tao ◽  
Tao Lei ◽  
Fangbo Cao ◽  
Jiana Chen ◽  
...  

Summary The development of high-yielding, short-duration super-rice hybrids is important for ensuring food security in China where multiple cropping is widely practiced and large-scale farming has gradually emerged. In this study, field experiments were conducted over 3 years to identify the yield formation characteristics in the shorter-duration (∼120 days) super-rice hybrid ‘Guiliangyou 2’ (G2) by comparing it with the longer-duration (∼130 days) super-rice hybrid ‘Y-liangyou 1’ (Y1). The results showed that G2 had a shorter pre-heading growth duration and consequently a shorter total growth duration compared to Y1. Compared to Y1, G2 had lower total biomass production that resulted from lower daily solar radiation, apparent radiation use efficiency (RUE), crop growth rate (CGR), and biomass production during the pre-heading period, but the grain yield was not significantly lower than that of Y1 because it was compensated for by the higher harvest index that resulted from slower leaf senescence (i.e., slower decline in leaf area index during the post-heading period) and higher RUE, CGR, and biomass production during the post-heading period. Our findings suggest that it is feasible to reduce the dependence of yield formation on growth duration to a certain extent in rice by increasing the use efficiency of solar radiation through crop improvement and also highlight the need for a greater fundamental understanding of the physiological processes involved in the higher use efficiency of solar radiation in super-rice hybrids.


2021 ◽  
Vol 13 (2) ◽  
pp. 303
Author(s):  
Shi Hu ◽  
Xingguo Mo

Using the Global Land Surface Satellite (GLASS) leaf area index (LAI), the actual evapotranspiration (ETa) and available water resources in the Mekong River Basin were estimated with the Remote Sensing-Based Vegetation Interface Processes Model (VIP-RS). The relative contributions of climate variables and vegetation greening to ETa were estimated with numerical experiments. The results show that the average ETa in the entire basin increased at a rate of 1.16 mm year−2 from 1980 to 2012 (36.7% of the area met the 95% significance level). Vegetation greening contributed 54.1% of the annual ETa trend, slightly higher than that of climate change. The contributions of air temperature, precipitation and the LAI were positive, whereas contributions of solar radiation and vapor pressure were negative. The effects of water supply and energy availability were equivalent on the variation of ETa throughout most of the basin, except the upper reach and downstream Mekong Delta. In the upper reach, climate warming played a critical role in the ETa variability, while the warming effect was offset by reduced solar radiation in the Mekong Delta (an energy-limited region). For the entire basin, the available water resources showed an increasing trend due to intensified precipitation; however, in downstream areas, additional pressure on available water resources is exerted due to cropland expansion with enhanced agricultural water consumption. The results provide scientific basis for practices of integrated catchment management and water resources allocation.


2010 ◽  
Vol 45 (12) ◽  
pp. 1331-1341 ◽  
Author(s):  
Homero Bergamaschi ◽  
Genei Antonio Dalmago ◽  
João Ito Bergonci ◽  
Cleusa Adriane Menegassi Bianchi Krüger ◽  
Bruna Maria Machado Heckler ◽  
...  

The objective of this work was to evaluate changes in the photosynthetic photon flux density (PPFD) interception efficiency and PPFD extinction coefficient for maize crop subjected to different soil tillage systems and water availability levels. Crops were subjected to no-tillage and conventional tillage systems combined with full irrigation and non-irrigation treatments. Continuous measurements of transmitted PPFD on the soil surface and incoming PPFD over the canopy were taken throughout the crop cycle. Leaf area index and soil water potential were also measured during the whole period. Considering a mean value over the maize cycle, intercepted PPFD was higher in the conventional tillage than in the no-tillage system. During the initial stages of plants, intercepted PPFD in the conventional tillage was double the PPFD interception in the no-tillage treatment. However, those differences were reduced up to the maximum leaf area index, close to tasseling stage. The lowest interception of PPFD occurred in the conventional tillage during the reproductive period, as leaf senescence progressed. Over the entire crop cycle, the interception of PPFD by the non-irrigated plants was about 20% lower than by the irrigated plants. The no-tillage system reduced the extinction coefficient for PPFD, which may have allowed a higher penetration of solar radiation into the canopy


2021 ◽  
Author(s):  
Gastón Mauro Díaz

1) Hemispherical photography (HP) is a long-standing tool for forest canopy characterization. Currently, there are low-cost fisheye lenses to convert smartphones into high-portable HP equipment; however, they cannot be used whenever since HP is sensitive to illumination conditions. To obtain sound results outside diffuse light conditions, a deep-learning-based system needs to be developed. A ready-to-use alternative is the multiscale color-based binarization algorithm, but it can provide moderate-quality results only for open forests. To overcome this limitation, I propose coupling it with the model-based local thresholding algorithm. I call this coupling the MBCB approach. 2) Methods presented here are part of the R package CAnopy IMage ANalysis (caiman), which I am developing. The accuracy assessment of the new MBCB approach was done with data from a pine plantation and a broadleaf native forest. 3) The coefficient of determination (R^2) was greater than 0.7, and the root mean square error (RMSE) lower than 20 %, both for plant area index calculation. 4) Results suggest that the new MBCB approach allows the calculation of unbiased canopy metrics from smartphone-based HP acquired in sunlight conditions, even for closed canopies. This facilitates large-scale and opportunistic sampling with hemispherical photography.


Water ◽  
2021 ◽  
Vol 13 (22) ◽  
pp. 3218
Author(s):  
Simon Damien Carrière ◽  
Nicolas K. Martin-StPaul ◽  
Claude Doussan ◽  
François Courbet ◽  
Hendrik Davi ◽  
...  

The spatial forest structure that drives the functioning of these ecosystems and their response to global change is closely linked to edaphic conditions. However, the latter properties are particularly difficult to characterize in forest areas developed on karst, where soil is highly rocky and heterogeneous. In this work, we investigated whether geophysics, and more specifically electromagnetic induction (EMI), can provide a better understanding of forest structure. We use EMI (EM31, Geonics Limited, Ontario, Canada) to study the spatial variability of ground properties in two different Mediterranean forests. A naturally post-fire regenerated forest composed of Aleppo pines and Holm oaks and a monospecific plantation of Altlas cedar. To better interpret EMI results, we used electrical resistivity tomography (ERT), soil depth surveys, and field observations. Vegetation was also characterized using hemispherical photographs that allowed to calculate plant area index (PAI). Our results show that the variability of ground properties contribute to explaining the variability in the vegetation cover development (plant area index). Vegetation density is higher in areas where the soil is deeper. We showed a significant correlation between edaphic conditions and tree development in the naturally regenerated forest, but this relationship is clearly weaker in the cedar plantation. We hypothesized that regular planting after subsoiling, as well as sylvicultural practices (thinning and pruning) influenced the expected relationship between vegetation structure and soil conditions measured by EMI. This work opens up new research avenues to better understand the interplay between soil and subsoil variability and forest response to climate change.


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