scholarly journals Short Tandem Repeats (STRs) as Biomarkers for the Quantitative Follow-Up of Chimerism after Stem Cell Transplantation: Methodological Considerations and Clinical Application

Genes ◽  
2020 ◽  
Vol 11 (9) ◽  
pp. 993
Author(s):  
Almudena Navarro-Bailón ◽  
Diego Carbonell ◽  
Asunción Escudero ◽  
María Chicano ◽  
Paula Muñiz ◽  
...  

Chimerism refers to the relative proportion of donor and recipient DNA after hematopoietic stem cell transplantation (HSCT) and its quantitative follow-up is of great clinical utility in this setting. PCR of short tandem repeats (STR-PCR) constitutes the gold standard method for chimerism quantification, although more sensitive PCR techniques (such as qPCR) have recently arisen. We compared the sensitivity and the quantification capacity of both techniques in patient samples and artificial mixtures and demonstrated adequate performance of both methods, with higher sensitivity of qPCR and better quantification skills of STR-PCR. By qPCR, we then prospectively followed up 57 patients that were in complete chimerism (CC) by STR-PCR. Twenty-seven patients (59%) showed 0.1–1% recipient DNA in the bone marrow. Only 4 patients presented 0.1–1% recipient DNA in peripheral blood (PB), and one of them relapsed. Finally, by qPCR, we retrospectively studied the last sample that showed CC by STR-PCR prior to relapse in 8 relapsed patients. At a median of 59 days prior to relapse, six patients presented mixed chimerism by qPCR in PB. Since both approaches have complementary characteristics, we conclude that different techniques should be applied in different clinical settings and therefore propose a methodological algorithm for chimerism follow-up after HSCT.

2007 ◽  
Vol 59 (1) ◽  
pp. 23-27
Author(s):  
Aleksandra Krstic ◽  
O. Stojkovic ◽  
Marija Guc-Scekic ◽  
Dragana Vujic ◽  
Dragana Jevtic ◽  
...  

Hematopoietic stem cell transplantation (HSCT) is a very successful method of treatment for children with different aquired or inborn diseases. The main goal of post-transplantation chimerism monitoring in HSCT is to predict negative events (such as disease relapse and graft rejection), in order to intervene with appropriate therapy and improve the probability of long-term DFS (disease free survival). In this context, by quantifying the relative amounts of donor and recipient cells present in the peripheral blood sample, it can be determined if engraftment has taken place at all, or if full or mixed chimerism exists. In a group of patients who underwent hematopoietic stem cell transplantation at the Mother and Child Health Care Institute, we decided to use standard human identfication tests based on multiplex PCR analyses of short tandem repeats (STRs), as they are highly informative, sensitive, and fast and therefore represent an optimal methodological approach to engraftment analysis.


Blood ◽  
2016 ◽  
Vol 128 (22) ◽  
pp. 4681-4681
Author(s):  
Emma C Morris ◽  
Thomas Andrew Fox ◽  
Siobhan Burns ◽  
Ben Carpenter ◽  
Kirsty J Thomson ◽  
...  

Abstract The primary immunodeficiencies (PID) are rare inherited diseases characterised by severe dysfunction of adaptive and/or innate immunity. Over 200 distinct PIDs have been described, with 20 of them accounting for > 90% cases. The 3 most common PIDs are severe combined immunodeficiency (SCID), Wiskott Aldrich syndrome (WAS) and chronic granulomatous disease (CGD). Many have been successfully treated by allogeneic hematopoietic stem cell transplantation (Allo-HSCT), however, almost all published series to date have focussed on paediatric patients. In the largest published series, the median age at transplant is < 1 year for SCID, 12.7 years for CGD, and 3 years for WAS. Early Allo-HSCT is preferred for PID patients, but not always possible. Delayed diagnosis and 'milder' clinical phenotypes may delay treatment with curative intent. With improved supportive care PID patients are more likely to survive to early adulthood without Allo-HSCT, despite serious co-morbidities. Furthermore, for several PIDs, controversy surrounding optimal timing of Allo-HSCT remains due to rarity of disease and lack of experience. Furthermore, Allo-HSCT for older adolescents and adults with PID has previously been avoided due to severe TRM and poor outcomes. Here we report the largest group of consecutive adult PID patients described to date (n=27) who underwent Allo-HSCT in the adult HSCT programme of University College London. The mean age was 24 years (range 17-50) at transplant. Of these, 11 patients had X-linked or autosomal recessive CGD and 16 had other inherited PID, including CVID (1 with T-NHL, 1 with HLH, 1 with GLILD) (n=3), autoimmune LPD (1 Fas mutation) (n=2), X-linked LPD (n=1), DCML +/- Gata2 mutation (n=2), Gata2 Defic (n=1), Cg-SCID (n=1), CID with CD27 Defic (1 with HL and DLBCL, 1 with HL) (n=2), NK Defic (n=1), AR IL12 Recb Defic (n=1), XIAP with Crohn's and HLH (n=1) and Rag2 compound heterozygote with red cell aplasia (n=1). Stem cell donors were matched unrelated (MUD) (n=14), mismatched unrelated (MMUD) (n=5, all 1 Ag mismatch) or matched related donors (MRD) (n=8). Stem cell source was PBSC (n=20) and BM (n=7). Reduced intensity conditioning was used in 26 patients including Flu/Mel/Alemtuzumab (n=17), Flu/Bu/Alemtuzumab (n=8) and Flu/Bu/ATG (n=1). One patient underwent myeloablative conditioning with Flu/Cy/TBI. Additional GVHD prophylaxis with cyclosporine was used in all patients. Reverse isolation, antimicrobial and antifungal prophylaxis were used to reduce the risk of infectious complications. Acute and chronic GVHD incidence and severity and time to engraftment, lineage specific chimerism, immune reconstitution and discontinuation of immunoglobulin replacement therapy were recorded. Overall survival (OS) at 2 years for all patients was 85.6%, and by donor was 75% for MRDs (n=8) and 89.5% for MMUD/MUD (n=19) with a mean follow up of 35 months (range: 7 to 11 years 1 month). Analysis of outcome by diagnosis demonstrated OS at 2 years of 81.8% for CGD patients (n=11) and 87.5% for other PIDs (n=16). TRM was low with only four deaths observed at a median follow-up of 22 months (n=27). 2 patients died of multi organ failure and sepsis prior to engraftment, one at 7 months post-HSCT of granulomatous meningitis and grade III aGVHD and one at 28 months post-HSCT of sepsis in the context of chronic extensive GVHD. 8 patients developed grades I-II aGVHD (6 skin only, 1 involving the gut and 1 progressing to chronic lung GVHD). GVHD had resolved in all but one patient at last follow up. For all patients, neutrophil and platelet engraftment occurred after a median of 12 and 14 days respectively. Peripheral blood chimerism was available for 22 of the 23 surviving patients at last follow up. Multilineage full donor chimerism was observed in 8 (36%) with mixed chimerism observed in at least one cell lineage tested for the remainder. At 1-year post transplant, 80% of those tested had achieved a normal lymphocyte count (1.0-2.8 x 109/L), 47% had normalization of absolute CD3+ count (0.7-2.1 x 109/L), 40% had a normal CD4+ count (0.3-1.4 x109/L) and 87% had normalisation of their CD8+ cell count (0.2-0.9 x109/L). Allo-HSCT is well tolerated in this patient group and should be considered as an alternative therapeutic option in PID patients not transplanted in childhood where an appropriate donor is available. Triggers for referral should include life threatening infections, malignancy, severe autoimmunity and refractory disease. Disclosures Fielding: Baxalta: Membership on an entity's Board of Directors or advisory committees; Amgen: Membership on an entity's Board of Directors or advisory committees; Pfizer: Membership on an entity's Board of Directors or advisory committees.


Blood ◽  
2007 ◽  
Vol 110 (11) ◽  
pp. 5048-5048
Author(s):  
Adriana Plesa ◽  
Quoc-Hung Le ◽  
Daniela Revesz ◽  
Xavier Thomas ◽  
Sophie Ducastelle ◽  
...  

Abstract This study concerns the correlation between chimerism and minimal residual disease (MRD) documentation of 12 patients (9 males and 3 females − 51 years) who underwent allogeneic hematopoietic stem cell transplantation (HSCT) for chronic lymphocytic leukemia (CLL). Chimerism was assessed from total peripheral blood (PB), bone marrow (BM) and CD3+ cells by STR-PCR (sensitivity [S]:5%) followed by SNP-PCR (S:0.2%) and MRD from PB and BM by an international standardized multicolor flow cytometric approach (S:0.01%). At diagnosis, there were 4 Binet stage A, 7 stage B and 1 stage C. Four patients were in CR, 7 in PR and 1 in progressive disease pre-transplant. Eleven patients underwent 1 HSCT and one patient 2 HSCT from HLA identical sibling donors (10 PBSC and 3 BM); 2 patients received a myeloablative regimen and 10 reduced intensity conditioning. After transplant, 6 patients developed an acute GVHD≥ grade 2 and 8 a chronic GVHD. The chimerism kinetics were followed in all patients and showed a conversion from mixed chimerism (MC) into full donor chimerism (FDC) at day 30 post transplant in 6 patients, between day 30 and day 120 in 4 patients, 2 patients never converted to FDC and remained either in stable MC or progressed to recipient profile. MRD documentation was introduced more recently and we have MRD kinetics only for 5 patients showing a slower MRD decrease when compared to chimerism kinetics. The median follow-up was 39 months and at the last follow-up, among the 11 patients who received 1 HSCT, 2 patients died from infection and they showed FDC and MRD negativity, 9 patients are alive (7 in CR according to NCI criteria and 2 were too early). Among the 7 CR patients, 6 were in FDC and MRD negative and 1 in MC and MRD negative. The patient who received 2 allogeneic transplants had in fact relapsed 24 months after the first allogeneic transplant and the second transplant allowed a CR associated to a MRD negative status and FDC, followed by a recent increase of MRD level in spite of FDC maintenance at last follow-up. We studied 246 samples for chimerism and 88 for MRD. To correlate quantitative MRD levels with chimerism data only 56 samples were comparable. Considering kinetics, we observed a concordance in 50/56 (89%) with 16/50 (32%) both positive early after transplant and 34/50 (68%) both negative later. Among the 6 non concordant samples which belonged to 2 patients, 5/6 (83%) were MC and MRD negative explained by the mixed chimerism profile of CD3+ cells and 1/6 (relapsed patient) was MRD positive and FDC explained by the better sensitivity of MRD. Relation between MRD and chimerism for PB and BM was tested using a mixed effect linear regression to account for repeated measures for each patient. This analysis showed a significant correlation between PB MRD and chimerism (p<0.001) and between BM MRD and chimerism (p<0.001). In conclusion, because of the better sensitivity, specificity and advantageous cost of MRD flow we could recommend in the future to combine chimerism and MRD documentation during the first 90 days and to limit to the flow cytometry MRD approach past the 90 days follow-up after allogeneic HSCT for CLL patients.


Blood ◽  
2003 ◽  
Vol 101 (1) ◽  
pp. 363-369 ◽  
Author(s):  
Ephraim P. Hochberg ◽  
David B. Miklos ◽  
Donna Neuberg ◽  
Daniel A. Eichner ◽  
Stephen F. McLaughlin ◽  
...  

Abstract A major end point of nonmyeloablative hematopoietic stem cell transplantation is the attainment of either mixed chimerism or full donor hematopoiesis. Because the majority of human genetic disparity is generated by single nucleotide polymorphisms (SNPs), direct measurement of SNPs should provide a robust tool for the detection and quantitation of chimerism. Using pyrosequencing, a rapid quantitative sequencing technology, we developed a SNP-based assay for hematopoietic chimerism. Based on 14 SNPs with high allele frequencies, we were able to identify at least 1 informative SNP locus in 55 patients with HLA-identical donors. The median number of informative SNPs in related pairs was 5 and in unrelated pairs was 8 (P &lt; .0001). Assessment of hematopoietic chimerism in posttransplantation DNA was shown to be quantitative, accurate, and highly reproducible. The presence of 5% donor cells was reliably detected in replicate assays. Compared with current measures of engraftment based on identification of short tandem repeats (STRs), variable number of tandem repeats (VNTRs), or microsatellite polymorphisms, this SNP-based method provides a more rapid and quantitative assessment of chimerism. A large panel of SNPs enhances the ability to identify an informative marker in almost all patient/donor pairs and also facilitates the simultaneous use of multiple markers to improve the statistical validity of chimerism measurements. The inclusion of SNPs that encode minor histocompatibility antigens or other genetic polymorphisms that may influence graft-versus-host disease or other transplantation outcomes can provide additional clinically relevant data. SNP-based assessment of chimerism is a promising technique that will assist in the analysis of outcomes following transplantation.


Blood ◽  
2011 ◽  
Vol 117 (16) ◽  
pp. 4367-4375 ◽  
Author(s):  
Mary A. Slatter ◽  
Kanchan Rao ◽  
Persis Amrolia ◽  
Terry Flood ◽  
Mario Abinun ◽  
...  

Abstract Children with primary immunodeficiency diseases, particularly those less than 1 year of age, experience significant toxicity after hematopoietic stem cell transplantation, with busulfan- or melphalan-based conditioning. Treosulfan causes less veno-occlusive disease than busulfan and does not require pharmacokinetic monitoring. We report its use in 70 children. Children received 42 g/m2 or 36 g/m2 with cyclophosphamide 200 mg/kg (n = 30) or fludarabine 150 mg/m2 (n = 40), with alemtuzumab in most. Median age at transplantation was 8.5 months (range, 1.2-175 months); 46 (66%) patients were 12 months of age or younger. Donors were as follows: matched sibling donor, 8; matched family donor, 13; haploidentical, 4; and unrelated, 45. Median follow-up was 19 months (range, 1-47 months). Overall survival was 81%, equivalent in those age less or greater than 1 year. Skin toxicity was common. Veno-occlusive disease occurred twice with cyclophosphamide. Eighteen patients (26%) had graft-versus-host disease, and only 7 (10%) greater than grade 2. Two patients rejected; 24 of 42 more than 1 year after transplantation had 100% donor chimerism. The remainder had stable mixed chimerism. T-cell chimerism was significantly better with fludarabine. Long-term follow-up is required, but in combination with fludarabine, treosulfan is a good choice of conditioning for hematopoietic stem cell transplantation in primary immunodeficiency disease.


2020 ◽  
Vol 35 (Supplement_3) ◽  
Author(s):  
Anar Gurbanov ◽  
Bora Gülhan ◽  
Barış Kuşkonmaz ◽  
Fatma Visal Okur ◽  
Duygu Uçkan Çetinkaya ◽  
...  

Abstract Background and Aims The aim of the study is to investigate the incidence and risk factors of hypertension (HT) and chronic kidney disease (CKD) in patients who had hematopoietic stem cell transplantation (HSCT) during their childhood. Method Patients who had HSCT between January 2010-2019 with a minimum follow-up period of 6 months were included in the study. Data regarding renal complications were collected from the medical records of the patients. Guidelines of European Society of Hypertension (ESH) and American Academy of Pediatrics (APA) were used for the evaluation of hypertension. 24-hr ambulatory blood pressure monitoring (ABPM) was performed in children older than 5 years of age (68 patients). Ambulatory hypertension is diagnosed when systolic and/or diastolic blood pressure (BP) load is higher than 25%. Ambulatory prehypertension is diagnosed when mean systolic and/or diastolic BP is less than 95th percentile with systolic and/or diastolic BP load higher than 25%. Results A total of 72 patients (41 males and 31 females) were included in the study. The mean age of the patients at last visit was 10.8±4 years. ABPM revealed ambulatory HT in 6 patients (8.8%) and ambulatory prehypertension in 12 patients (17.6%). Office BP revealed HT in 3 patients (4.2%) and increased BP in four patients (5.6%) according to APA guideline (2017). In cohort, 12 patients with normal office BP (according to APA guideline) had ambulatory prehypertension or hypertension with ABPM. Office BP revealed HT in 1 patient (1.4%) and high-normal BP in 3 patients (4.2%) according to ESH guideline. In cohort, 15 patients with normal office BP (according to ESH guideline) had ambulatory prehypertension or hypertension with ABPM (Table 1). After a mean follow-up period of 4.4±2.5 years, CKD developed in 8 patients (11.1%). Patients with chronic graft-versus-host disease, with HLA-mismatched HSCT and/or transplantation of peripheric or cord blood hematopoietic stem cells had increased risk of CKD (p=0.041, p=0.033 and p=0.002, respectively). Conclusion Patients with HSCT should be regularly followed for the development of HT and ABPM should be used on regular basis. Patients with risk factors should be closely monitored for the development of CKD.


2011 ◽  
Vol 5 (6) ◽  
pp. 543-549 ◽  
Author(s):  
Daniel W. Hommes ◽  
Marjolijn Duijvestein ◽  
Zuzana Zelinkova ◽  
Pieter C.F. Stokkers ◽  
Maartje Holsbergen-de Ley ◽  
...  

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Sheng-Min Wang ◽  
Sung-Soo Park ◽  
Si-Hyun Park ◽  
Nak-Young Kim ◽  
Dong Woo Kang ◽  
...  

Abstract Studies investigating association of depression with overall survival (OS) after allogeneic hematopoietic stem cell transplantation (allo-HSCT) yielded conflicting results. A nationwide cohort study, which included all adult patients [n = 7,170; depression group, 13.3% (N = 956); non-depression group, 86.7% (N = 6,214)] who received allo-HSCT from 2002 to 2018 in South Korea, analyzed risk of pre-transplant depression in OS of allo-HSCT. Subjects were followed from the day they received allo-HSCT, to occurrence of death, or last follow-up day (December 31, 2018). Median age at allo-HSCT for depression and non-depression groups were 50 and 45 (p < 0.0001), respectively. Two groups also differed in rate of females (depression group, 55.8%; non-depression group, 43.8%; p < 0.0001) and leukemia (depression group, 61.4%; non-depression group, 49.7%; p < 0.0001). After a median follow-up of 29.1 months, 5-year OS rate was 63.1%. Cox proportional-hazard regression evaluated an adjusted risk of post-transplant mortality related to depression: OS decreased sequentially from no depression (adjusted hazard ratio [aHR] = 1) to pre-transplant depression only (aHR = 1.167, CI: 1.007–1.352, p = 0.04), and to having both depression and anxiety disorder (aHR = 1.202, CI: 1.038–1.393, p = 0.014) groups. Pre-transplant anxiety (anxiety only) did not have significant influence in OS. Additional medical and psychiatric care might be necessary in patients who experienced depression, especially with anxiety, before allo-HSCT.


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