scholarly journals Phylogenetic Analysis and Karyotype Evolution in Two Species of Core Gruiformes: Aramides cajaneus and Psophia viridis

Genes ◽  
2020 ◽  
Vol 11 (3) ◽  
pp. 307 ◽  
Author(s):  
Ivanete de Oliveira Furo ◽  
Rafael Kretschmer ◽  
Patrícia C. M. O’Brien ◽  
Jorge C. Pereira ◽  
Malcolm A. Ferguson-Smith ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Genomic Dna ◽  
Common Ancestor ◽  
Karyotype Evolution ◽  
Molecular Cytogenetics ◽  
Ancestral Karyotype ◽  
The Core ◽  
Fulica Atra ◽  
The Common ◽  
Different Origins

Gruiformes is a group with phylogenetic issues. Recent studies based on mitochondrial and genomic DNA have proposed the existence of a core Gruiformes, consisting of five families: Heliornithidae, Aramidae, Gruidae, Psophiidae and Rallidae. Karyotype studies on these species are still scarce, either by conventional staining or molecular cytogenetics. Due to this, this study aimed to analyze the karyotype of two species (Aramides cajaneus and Psophia viridis) belonging to families Rallidae and Psopiidae, respectively, by comparative chromosome painting. The results show that some chromosome rearrangements in this group have different origins, such as the association of GGA5/GGA7 in A. cajaneus, as well as the fission of GGA4p and association GGA6/GGA7, which place P. viridis close to Fulica atra and Gallinula chloropus. In addition, we conclude that the common ancestor of the core Gruiformes maintained the original syntenic groups found in the putative avian ancestral karyotype.

scholarly journals Morphology-based phylogenetic analysis of the treehopper tribe Smiliini (Hemiptera: Membracidae: Smiliinae), with reinstatement of the tribe Telamonini

Zootaxa ◽  
2011 ◽  
Vol 3047 (1) ◽  
pp. 1 ◽  
Author(s):  
MATTHEW S. WALLACE
Keyword(s):  
Phylogenetic Analysis ◽  
Common Ancestor ◽  
Hind Wing ◽  
Morphological Characters ◽  
Dorsal Margin ◽  
Incertae Sedis ◽  
Plant Associations ◽  
Original Dataset ◽  
The Common ◽  
Morphological Differences

Members of the Smiliini, the nominotypical tribe of the large New World subfamily Smiliinae, are predominately Nearctic in distribution. This tribe included 169 mostly tree-feeding species in 23 genera. A parsimony-based phylogenetic analysis of an original dataset comprising 89 traditional and newly discovered morphological characters for 69 species, including representatives of 22 of the 23 described genera of Smiliini and five other previously recognized tribes of the subfamily, resulted in a single most parsimonious tree with three major clades. The broad recent concept of Smiliini (including Telamonini as a junior synonym) was not recovered as monophyletic by the analysis. Instead, the analysis supported narrower definitions of both Telamonini, here reinstated from synonymy, and Smiliini. A key and diagnoses are given to define these tribes, along with discussions of their phylogeny, biogeography, and host plant associations. The genera Antianthe Fowler, Hemicardiacus Plummer, Smilirhexia McKamey, and Tropidarnis Fowler are placed as Smiliinae, incertae sedis. Based on the phylogeny, several genera from both tribes including Atymna Stål, Cyrtolobus Goding, Heliria Stål, and Telamona Fitch are not monophyletic. Diagnostic characters emphasizing the morphological differences between the Smiliini and Telamonini include the dorsal margin of the head, the shape of the pronotum, the size of the pronotal humeral angles, the presence or absence of pronotal longitudinal rugae, the size of forewing cells, variations in the fusion of veins R and M apically in both the foreand hind wing, and the shape of the apex of the female second valvulae. Mapping geographic distribution onto the phylogeny suggests that the common ancestor of the ingroup (all three clades) occurred in Central America and Mexico, with multiple dispersals to temperate North America. Many Smiliini and Telamonini feed on various species of oak (Quercus) and the close evolutionary association between these insects and their hosts is discussed.

scholarly journals Placenta-Specific Protein 1 Is Conserved throughout the Placentalia under Purifying Selection

2014 ◽  
Vol 2014 ◽  
pp. 1-5 ◽  
Author(s):  
Eric J. Devor
Keyword(s):  
Phylogenetic Analysis ◽  
Common Ancestor ◽  
Phylogenetic Analyses ◽  
Mammalian Species ◽  
Purifying Selection ◽  
Specific Protein ◽  
Mammal Species ◽  
Crucial Component ◽  
Successful Group ◽  
The Common

Placental mammals (Placentalia) are a very successful group that, today, comprise 94% of all mammalian species. Recent phylogenetic analyses, coupled with new, quite complete fossils, suggest that the crown orders were all established rapidly from a common ancestor just after the Cretaceous/Tertiary (K/T) boundary 65 million years ago. Extensive molecular and morphologic evidence has led to a description of the common ancestor of all Placentalia in which a two-horned uterus and a hemochorial placenta are present. Thus, the process of placentation in which the placenta invades and anchors to the uterine epithelium was already established. One factor that has been suggested as a crucial component of this process is placenta-specific protein 1 (PLAC1). A phylogenetic analysis of the PLAC1 protein in 25 placental mammal species, representing nine of the sixteen crown orders of the Placentalia, suggests that this protein was present in the placental common ancestor in the form we see it today, that it evolved in the Placentalia and has been subject to the effects of purifying selection since its appearance.

scholarly journals Intact rDNA arrays of Potentilla-origin detected in Erythronium nucleus suggest recent eudicot-to-monocot horizontal transfer

2021 ◽  
Author(s):  
Laszlo Bartha ◽  
Terezie Mandakova ◽  
Ales Kovarik ◽  
Paul Adrian Bulzu ◽  
Nathalie Rodde ◽  
...  
Keyword(s):  
Southern Blotting ◽  
Common Ancestor ◽  
Phylogenetic Signal ◽  
Molecular Cytogenetics ◽  
Nuclear Genome ◽  
Phylogenetic Distance ◽  
Bac Clone ◽  
Intimate Association ◽  
The Common ◽  
Naturally Transgenic Plants

The occurrence of horizontal gene transfer (HGT) in Eukarya is increasingly gaining recognition. Nuclear-to-nuclear jump of DNA between plant species at high phylogenetic distance and devoid of intimate association (e.g., parasitism) is still scarcely reported. Within eukaryotes, components of ribosomal DNA (rDNA) multigene family have been found to be horizontally transferred in protists, fungi and grasses. However, in neither case HGT occurred between phylogenetic families, nor the transferred rDNA remained tandemly arrayed and transcriptionally active in the recipient organism. This study aimed to characterize an alien eudicot-type of 45S nuclear rDNA, assumingly transferred horizontally to the genome of monocot European Erythronium (Liliaceae). Genome skimming coupled by PacBio HiFi sequencing of a BAC clone were applied to determine DNA sequence of the alien rDNA. A clear phylogenetic signal traced the origin of the alien rDNA of Erythronium back to the Argentea clade of Potentilla (Rosaceae) and deemed the transfer to have occurred in the common ancestor of E. dens-canis and E. caucasicum. Though being discontinuous, transferred rDNA preserved its general tandemly arrayed feature in the host organism. Southern blotting, molecular cytogenetics, and sequencing of a BAC clone derived from flow-sorted nuclei indicated integration of the alien rDNA into the recipient's nuclear genome. Unprecedently, dicot-type alien rDNA was found to be transcribed in the monocot Erythronium albeit much less efficiently than the native counterpart. This study adds a new example to the growing list of naturally transgenic plants while holding the scientific community continually in suspense about the mode of DNA transfer.

scholarly journals Urkinase: Structure of Acetate Kinase, a Member of the ASKHA Superfamily of Phosphotransferases

2001 ◽  
Vol 183 (2) ◽  
pp. 680-686 ◽  
Author(s):  
Kathryn A. Buss ◽  
David R. Cooper ◽  
Cheryl Ingram-Smith ◽  
James G. Ferry ◽  
David Avram Sanders ◽  
...  
Keyword(s):  
Common Ancestor ◽  
Three Dimensional ◽  
Dimensional Structure ◽  
Acetate Kinase ◽  
Active Site Residues ◽  
Methanosarcina Thermophila ◽  
The Core ◽  
Binding Domains ◽  
The Common ◽  
Actin Superfamily

ABSTRACT Acetate kinase, an enzyme widely distributed in theBacteria and Archaea domains, catalyzes the phosphorylation of acetate. We have determined the three-dimensional structure of Methanosarcina thermophila acetate kinase bound to ADP through crystallography. As we previously predicted, acetate kinase contains a core fold that is topologically identical to that of the ADP-binding domains of glycerol kinase, hexokinase, the 70-kDa heat shock cognate (Hsc70), and actin. Numerous charged active-site residues are conserved within acetate kinases, but few are conserved within the phosphotransferase superfamily. The identity of the points of insertion of polypeptide segments into the core fold of the superfamily members indicates that the insertions existed in the common ancestor of the phosphotransferases. Another remarkable shared feature is the unusual, epsilon conformation of the residue that directly precedes a conserved glycine residue (Gly-331 in acetate kinase) that binds the α-phosphate of ADP. Structural, biochemical, and geochemical considerations indicate that an acetate kinase may be the ancestral enzyme of the ASKHA (acetate and sugar kinases/Hsc70/actin) superfamily of phosphotransferases.

scholarly journals Phylogenetic characterization and evolution of the VP4 gene of P[9] rotaviruses

2020 ◽  
Author(s):  
Sharnali Ahmed ◽  
Takaaki Yahiro ◽  
Nor Amalina Emran ◽  
Lia Natasha Amit ◽  
Hidekatsu Iha ◽  
...  
Keyword(s):  
Common Ancestor ◽  
Genetic Characterization ◽  
Specific Region ◽  
Phylogenetic Characterization ◽  
The World ◽  
The Common ◽  
Different Origins ◽  
Insight Into ◽  
Different Parts ◽  
Children Under 5

Abstract Objectives: Rotavirus is one of the major causes of gastroenteritis in children under 5 years of age and is responsible for over 200,000 deaths annually. Rotavirus can evolve by reassortment, in which gene segments are exchanged between strains of different origins. Rotavirus strains with the P[9] genotype is an example of reassortment, in which the P[9] genotype is from feline species. A number of outbreaks by P[9] strains have been documented in several countries. However, details regarding the epidemiological relationships between the strains remains largly unknown. Therefore, in the present study, genetic characterization and evolutionary analyses were perforemd to gain insight into P[9] strains circulating in different parts of the world. Results: The P[9] strains could be divided into five lineages, and that the common ancestor of currently circulating P[9] strains is around 168 years old. In each lineage, the strains were not only from different countries, but also from different continents. These findings suggest that none of the lineages has a specific region of distribution, and although humans have had interactions with cats for thousands of years, the ancestor of the current P[9] strain is relatively recent.

scholarly journals Phylogenetic and evolutionary analyses of the VP4 gene of P[9] rotaviruses

2020 ◽  
Author(s):  
Sharnali Ahmed ◽  
Takaaki Yahiro ◽  
Nor Amalina Emran ◽  
Lia Natasha Amit ◽  
Hidekatsu Iha ◽  
...  
Keyword(s):  
Common Ancestor ◽  
Genetic Characterization ◽  
Specific Region ◽  
The World ◽  
The Common ◽  
Different Origins ◽  
Insight Into ◽  
Different Parts ◽  
Children Under 5

Abstract Objectives: Rotavirus is one of the major causes of gastroenteritis in children under 5 years of age and is responsible for over 200,000 deaths annually. Rotavirus can evolve by reassortment, in which gene segments are exchanged between strains of different origins. Rotavirus strains with the P[9] genotype is an example of reassortment, in which the P[9] genotype is from feline species. A number of outbreaks associated with P[9] strains have been documented in several countries. However, details regarding the epidemiological relationships between the strains remains largely unknown. Therefore, in the present study, genetic characterization and evolutionary analyses were performed to gain insight into P[9] strains circulating in different parts of the world. Results: The VP4 gene of the P[9] strains could be divided into six lineages, and P[9] strains characterized in this study share a common ancestor that circulated in circa 1864. In each lineage, the strains were not only from different countries, but also from different continents. These findings suggest that none of the lineages has a specific region of distribution, and although humans have had interactions with cats for thousands of years, the common ancestor of the VP4 gene of the current P[9] strains is relatively recent.

scholarly journals Expansion of phycobilisome linker gene families in mesophilic red algae

2019 ◽  
Vol 10 (1) ◽  
Author(s):  
JunMo Lee ◽  
Dongseok Kim ◽  
Debashish Bhattacharya ◽  
Hwan Su Yoon
Keyword(s):  
Red Algae ◽  
Common Ancestor ◽  
Nuclear Gene ◽  
Gene Families ◽  
Red Alga ◽  
Gene Duplications ◽  
Porphyridium Purpureum ◽  
The Core ◽  
Photosynthetic Machinery ◽  
The Common

Abstract The common ancestor of red algae (Rhodophyta) has undergone massive genome reduction, whereby 25% of the gene inventory has been lost, followed by its split into the species-poor extremophilic Cyanidiophytina and the broadly distributed mesophilic red algae. Success of the mesophile radiation is surprising given their highly reduced gene inventory. To address this latter issue, we combine an improved genome assembly from the unicellular red alga Porphyridium purpureum with a diverse collection of other algal genomes to reconstruct ancient endosymbiotic gene transfers (EGTs) and gene duplications. We find EGTs associated with the core photosynthetic machinery that may have played important roles in plastid establishment. More significant are the extensive duplications and diversification of nuclear gene families encoding phycobilisome linker proteins that stabilize light-harvesting functions. We speculate that the origin of these complex families in mesophilic red algae may have contributed to their adaptation to a diversity of light environments.

A phylogenetic analysis of the New World tribe Phanaeini (Coleoptera: Scarabaeidae: Scarabaeinae): Hypotheses on relationships and origins

2004 ◽  
Vol 35 (1) ◽  
pp. 43-63 ◽  
Author(s):  
◽  
T. Keith Philips ◽  
Clarke Scholtz
Keyword(s):  
Phylogenetic Analysis ◽  
South America ◽  
New World ◽  
Common Ancestor ◽  
Morphological Characters ◽  
Monophyletic Clade ◽  
Close Relationship ◽  
Ball Surface ◽  
Species Groups ◽  
The Common

AbstractA phylogenetic analysis of Phanaeini based on 137 morphological characters supports the hypothesis that the nine included genera, Coprophanaeus, Dendropaemon, Diabroctis, Homalotarsus, Megatharsis, Oxysternon, Phanaeus, Sulcophanaeus and Tetrameira, form a monophyletic clade. Monophyly is unaffected by the inclusion of Gromphas, Oruscatus, and Bolbites and these should also be considered phanaeines. The sister lineage is Ennearabdus (Eucraniini) and both evolved from ancestral Dichotomiini within South America. There is no support for a close relationship with the Onitini or any other remaining tribe. All phanaeine genera appear to be monophyletic except Sulcophanaeus, of which two species groups appear as sister taxa while the remaining three form an independent paraphyletic clade. Ancestral phanaeines were coprophagous with necrophagy evolving at least twice. Myrmecophily is also derived and most likely evolved only once in the common ancestor of Dendropaemon, Homalotarsus, Megatharsis and Tetramereia. Bare dung ball construction for larval development is also the most likely ancestral condition with a soil covering on the exterior ball surface and parental cooperation evolving in the more derived lineages.

scholarly journals The evolution of chloroplast genome structure in ferns

Genome ◽  
2010 ◽  
Vol 53 (9) ◽  
pp. 731-738 ◽  
Author(s):  
Paul G. Wolf ◽  
Jessie M. Roper ◽  
Aaron M. Duffy
Keyword(s):  
Large Scale ◽  
Common Ancestor ◽  
Genome Structure ◽  
Intron Loss ◽  
Seed Plants ◽  
Plant Structure ◽  
The Core ◽  
Plastome Evolution ◽  
The Common ◽  
First Time

The plastid genome (plastome) is a rich source of phylogenetic and other comparative data in plants. Most land plants possess a plastome of similar structure. However, in a major group of plants, the ferns, a unique plastome structure has evolved. The gene order in ferns has been explained by a series of genomic inversions relative to the plastome organization of seed plants. Here, we examine for the first time the structure of the plastome across fern phylogeny. We used a PCR-based strategy to map and partially sequence plastomes. We found that a pair of partially overlapping inversions in the region of the inverted repeat occurred in the common ancestor of most ferns. However, the ancestral (seed plant) structure is still found in early diverging branches leading to the osmundoid and filmy fern lineages. We found that a second pair of overlapping inversions occurred on a branch leading to the core leptosporangiates. We also found that the unique placement of the gene matK in ferns (lacking a flanking intron) is not a result of a large-scale inversion, as previously thought. This is because the intron loss maps to an earlier point on the phylogeny than the nearby inversion. We speculate on why inversions may occur in pairs and what this may mean for the dynamics of plastome evolution.

scholarly journals Adult, intensively socialized wolves show features of attachment behaviour to their handler

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Rita Lenkei ◽  
Dóra Újváry ◽  
Viktória Bakos ◽  
Tamás Faragó
Keyword(s):  
Cognitive Abilities ◽  
Common Ancestor ◽  
Social Bonds ◽  
Social Bond ◽  
Secure Base ◽  
The Core ◽  
The Common ◽  
Attachment Behaviour

Abstract Dogs’ attachment towards humans might be the core of their social skillset, yet the origins of their ability to build such a bond are still unclear. Here we show that adult, hand-reared wolves, similarly to dogs, form individualized relationship with their handler. During separation from their handler, wolves, much like family dogs, showed signs of higher-level stress and contact seeking behaviour, compared to when an unfamiliar person left them. They also used their handler as a secure base, suggesting that the ability to form interspecific social bonds could have been present already in the common ancestor of dogs and wolves. We propose that their capacity to form at least some features of attachment with humans may stem from the ability to form social bond with pack members. This might have been then re-directed to humans during early domestication, providing the basis for the evolution of other socio-cognitive abilities in dogs.

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