scholarly journals Genetic Variation of European Beech Populations and Their Progeny from Northeast Germany to Southwest Switzerland

Forests ◽  
2018 ◽  
Vol 9 (8) ◽  
pp. 469 ◽  
Author(s):  
Markus Müller ◽  
Laura Cuervo-Alarcon ◽  
Oliver Gailing ◽  
Rajendra K.C. ◽  
Meena Chhetri ◽  
...  
Keyword(s):  
Climate Change ◽  
Genetic Diversity ◽  
Genetic Variation ◽  
European Beech ◽  
Snp Markers ◽  
Climatic Conditions ◽  
Adaptive Genetic Variation ◽  
Adult Trees ◽  
Fagus Sylvatica L ◽  
Regeneration Phase

Climate change can adversely affect the growth of European beech (Fagus sylvatica L.) across its entire distribution range. Therefore, knowledge of the adaptive potential of this species to changing climatic conditions is of foremost importance. Genetic diversity is the basis for adaptation to environmental stress, and the regeneration phase of forests is a key stage affecting genetic diversity. Nevertheless, little is known about the effect of climate change on the genetic diversity of adult trees compared to their progeny. Here, we present genetic diversity data for 24 beech populations ranging from northeast Germany to southwest Switzerland. Potentially adaptive genetic variation was studied using single nucleotide polymorphism (SNP) markers in candidate genes that are possibly involved in adaptive trait variation. In addition, more than 2000 adult trees and 3000 of their seedlings were genotyped with simple sequence repeat (SSR) markers to determine selectively neutral genetic diversity and differentiation among populations. All populations showed high SSR and SNP variation, and no differences in genetic diversity were found between adult trees and their offspring. The genetic differentiation between adults and seedlings within the same stands was also insignificant or very low. Therefore, we can conclude tentatively that the transfer of genetic variation among tree generations, currently, is not much affected by climate change, at least in the studied beech populations.

scholarly journals Intra- and interprovenance variations in leaf morphometric traits in European beech (Fagus sylvatica L.)

2016 ◽  
Vol 68 (4) ◽  
pp. 781-788 ◽  
Author(s):  
Srdjan Stojnic ◽  
Sasa Orlovic ◽  
Danijela Miljkovic ◽  
Wuehlisch von
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Genetic Variability ◽  
Fagus Sylvatica ◽  
Univariate Analysis ◽  
Principal Component ◽  
European Beech ◽  
Clinal Variation ◽  
Morphometric Traits ◽  
Fagus Sylvatica L

European beech (Fagus sylvatica L.) is one of the most important tree species in Europe. Due to substantial genetic diversity and phenotypic plasticity, beech has successfully adapted to different environments within its natural range. Provenance tests provide a good basis for studying within- and between-provenance genetic variation, due to homogeneous within-trial environmental conditions. The aim of the present study was to determine the within- and between-provenance genetic variability of certain leaf morphological traits among eleven beech provenances, grown in a common garden experiment. Univariate analysis of variance (ANOVA) was used to test for differences among the studied beech provenances. Principal component analysis (PCA) allowed a complex assessment of the relationships among the provenances and an estimation of multivariate relations among the analyzed characters. The results of the study revealed the existence of substantial variability among provenances (p<0.001). Likewise, high genetic variability was observed at the intra-provenance level (p<0.001). The first three principal components (PC1-PC3) explained approximately 81% of the total variance among the European beech provenances tested. The highest contribution on PC1 corresponded to variables related to leaf size: leaf area (-0.882) and leaf width (-0.876). Based on the position of provenances on a PCA scatter plot, it could be assumed that European beech is characterized by a more ecotypic pattern of genetic variation rather than by clinal variation. Also, the presence of considerable genetic diversity within provenances will be important in the light of climate change impact on beech, since it could potentially facilitate rapid adaptation.

scholarly journals Adaptive genetic variation at three loci in South African vervet monkeys (Chlorocebus pygerythrus) and the role of selection within Primates

2018 ◽  
Author(s):  
Willem G Coetzer ◽  
Trudy R Turner ◽  
Christopher A Schmitt ◽  
J Paul Grobler
Keyword(s):  
Genetic Variation ◽  
South African ◽  
Vervet Monkey ◽  
Climatic Conditions ◽  
Primate Species ◽  
Annual Rainfall ◽  
Future Research ◽  
Vervet Monkeys ◽  
Adaptive Genetic Variation ◽  
Chlorocebus Pygerythrus

Vervet monkeys (Chlorocebus pygerythrus) are one of the most widely distributed non-human primate species found in South Africa. They occur across all the South African provinces, inhabiting a large variety of habitats. These habitats vary sufficiently that it can be assumed that various factors such as pathogen diversity could influence populations in different ways. In turn, these factors could lead to varied levels of selection at specific fitness linked loci. The Toll-like Receptor (TLR) gene family, which play an integral role in vertebrate innate immunity, is a group of fitness linked loci which has been the focus of much research. In this study, we assessed the level of genetic variation at partial sequences of two TLR loci (TLR4 and 7) and a reproductively linked gene, acrosin (ACR), across the different habitat types within the vervet monkey distribution range. Gene variation and selection estimates were also made among 11 – 21 primate species. Low levels of genetic variation for all three gene regions were observed within vervet monkeys , with only two polymorphic sites identified for TLR4, three sites for TLR7 and one site for ACR . TLR7 variation was positively correlated with high mean annual rainfall, which was linked to increased pathogen abundance. The observed genetic variation at TLR4 might have been influenced by numerous factors including pathogens and climatic conditions. The ACR exonic regions showed no variation in vervet monkeys, which could point to the occurrence of a selective sweep. The TLR4 and TLR7 results for the among primate analyses was mostly in line with previous studies, indicating a higher rate of evolution for TLR4. Within primates, ACR also showed signs of positive selection, which was congruent with previous reports on mammals. Important additional information to the already existing vervet monkey knowledge base was gained from this study, which can guide future research projects on this highly researched taxon as well as help conservation agencies with future management planning involving possible translocations of this species.

Genetic diversity and differentiation in European beech (Fagus sylvatica L.) stands varying in management history

2007 ◽  
Vol 247 (1-3) ◽  
pp. 98-106 ◽  
Author(s):  
J. Buiteveld ◽  
G.G. Vendramin ◽  
S. Leonardi ◽  
K. Kamer ◽  
T. Geburek
Keyword(s):  
Genetic Diversity ◽  
Fagus Sylvatica ◽  
European Beech ◽  
Management History ◽  
Fagus Sylvatica L

scholarly journals Considering adaptive genetic variation in climate change vulnerability assessment reduces species range loss projections

2019 ◽  
Vol 116 (21) ◽  
pp. 10418-10423 ◽  
Author(s):  
Orly Razgour ◽  
Brenna Forester ◽  
John B. Taggart ◽  
Michaël Bekaert ◽  
Javier Juste ◽  
...  
Keyword(s):  
Climate Change ◽  
Genetic Variation ◽  
Environmental Changes ◽  
Landscape Connectivity ◽  
Future Climate ◽  
Future Climate Change ◽  
Adaptive Genetic Variation ◽  
Climate Change Vulnerability ◽  
Species Vulnerability ◽  
Evolutionary Rescue

Local adaptations can determine the potential of populations to respond to environmental changes, yet adaptive genetic variation is commonly ignored in models forecasting species vulnerability and biogeographical shifts under future climate change. Here we integrate genomic and ecological modeling approaches to identify genetic adaptations associated with climate in two cryptic forest bats. We then incorporate this information directly into forecasts of range changes under future climate change and assessment of population persistence through the spread of climate-adaptive genetic variation (evolutionary rescue potential). Considering climate-adaptive potential reduced range loss projections, suggesting that failure to account for intraspecific variability can result in overestimation of future losses. On the other hand, range overlap between species was projected to increase, indicating that interspecific competition is likely to play an important role in limiting species’ future ranges. We show that although evolutionary rescue is possible, it depends on a population’s adaptive capacity and connectivity. Hence, we stress the importance of incorporating genomic data and landscape connectivity in climate change vulnerability assessments and conservation management.

scholarly journals Predicting Adaptive Genetic Variation of Loblolly Pine (Pinus taeda L.) Populations Under Projected Future Climates Based on Multivariate Models

2019 ◽  
Vol 110 (7) ◽  
pp. 857-865 ◽  
Author(s):  
Mengmeng Lu ◽  
Konstantin V Krutovsky ◽  
Carol A Loopstra
Keyword(s):  
Climate Change ◽  
South Carolina ◽  
Genetic Variation ◽  
Loblolly Pine ◽  
Greenhouse Gas Emission ◽  
Isolation By Distance ◽  
Adaptive Genetic Variation ◽  
Climate Conditions ◽  
Geographical Regions ◽  
Bioclimatic Variables

Abstract Greenhouse gas emission and global warming are likely to cause rapid climate change within the natural range of loblolly pine over the next few decades, thus bringing uncertainty to their adaptation to the environment. Here, we studied adaptive genetic variation of loblolly pine and correlated genetic variation with bioclimatic variables using multivariate modeling methods—Redundancy Analysis, Generalized Dissimilarity Modeling, and Gradient Forests. Studied trees (N = 299) were originally sampled from their native range across eight states on the east side of the Mississippi River. Genetic variation was calculated using a total of 44,317 single-nucleotide polymorphisms acquired by exome target sequencing. The fitted models were used to predict the adaptive genetic variation on a large spatial and temporal scale. We observed east-to-west spatial genetic variation across the range, which presented evidence of isolation by distance. Different key factors drive adaptation of loblolly pine from different geographical regions. Trees residing near the northeastern edge of the range, spanning across Delaware and Maryland and mountainous areas of  Virginia, North Carolina, South Carolina, and northern Georgia, were identified to be most likely impacted by climate change based on the large difference in genetic composition under current and future climate conditions. This study provides new perspectives on adaptive genetic variation of loblolly pine in response to different climate scenarios, and the results can be used to target particular populations while developing adaptive forest management guidelines.

scholarly journals Indications of Genetic Admixture in the Transition Zone between Fagus sylvatica L. and Fagus sylvatica ssp. orientalis Greut. & Burd

Diversity ◽  
2019 ◽  
Vol 11 (6) ◽  
pp. 90 ◽  
Author(s):  
Markus Müller ◽  
Precious Annie Lopez ◽  
Aristotelis C. Papageorgiou ◽  
Ioannis Tsiripidis ◽  
Oliver Gailing
Keyword(s):  
Genetic Diversity ◽  
Fagus Sylvatica ◽  
Expressed Sequence Tag ◽  
European Beech ◽  
Morphological Characters ◽  
Genetic Admixture ◽  
Southeast Europe ◽  
Fagus Orientalis Lipsky ◽  
Specific Allele ◽  
Fagus Sylvatica L

Two subspecies of European beech (Fagus sylvatica L.) can be found in southeast Europe: Fagus sylvatica ssp. sylvatica L. and Fagus sylvatica ssp. orientalis (Lipsky) Greut. & Burd. (Fagus orientalis Lipsky). In a previous study, based on genetic diversity patterns and morphological characters, indications of hybridization between both subspecies were found in northeastern Greece, a known contact zone of F. sylvatica and F. orientalis. Nevertheless, potential genetic admixture has not been investigated systematically before. Here, we investigated genetic diversity and genetic structure of 14 beech populations originating from Greece and Turkey as well as of two reference F. sylvatica populations from Germany based on nine expressed sequence tag-simple sequence repeat (EST-SSR) markers. Very low genetic differentiation was detected among F. sylvatica populations (mean GST: 0.005) as well as among F. orientalis populations (mean GST: 0.008), but substantial differentiation was detected between populations of the two subspecies (mean GST: 0.122). Indications for hybridization between both subspecies were revealed for one population in Greece. One of the genetic markers showed specific allele frequencies for F. sylvatica and F. orientalis and may be used as a diagnostic marker in future studies to discriminate both subspecies.

scholarly journals Genotyping-by-sequencing reveals the effects of riverscape, climate and interspecific introgression on the genetic diversity and local adaptation of the endangered Mexican golden trout (Oncorhynchus chrysogaster)

2018 ◽  
Author(s):  
Marco A. Escalante ◽  
Charles Perrier ◽  
Francisco J. García-De León ◽  
Arturo Ruiz-Luna ◽  
Enrique Ortega-Abboud ◽  
...  
Keyword(s):  
Climate Change ◽  
Genetic Diversity ◽  
Genetic Variation ◽  
Local Adaptation ◽  
Population Genomics ◽  
Landscape Heterogeneity ◽  
Genotyping By Sequencing ◽  
Anthropogenic Factors ◽  
Nucleotide Polymorphisms ◽  
Evolutionary Potential

AbstractHow environmental and anthropogenic factors influence genetic variation and local adaptation is a central issue in evolutionary biology. The Mexican golden trout (Oncorhynchus chrysogaster), one of the southernmost native salmonid species in the world, is susceptible to climate change, habitat perturbations and the competition and hybridization with exotic rainbow trout (O. mykiss). The present study aimed for the first time to use genotyping-by-sequencing to explore the effect of genetic hybridization with O. mykiss and of riverscape and climatic variables on the genetic variation among O. chrysogaster populations. Genotyping-by-sequencing (GBS) was applied to generate 9767 single nucleotide polymorphisms (SNPs), genotyping 272 O. chrysogaster and O. mykiss. Population genomics analyses were combined with landscape ecology approaches into a riverine context (riverscape genetics). The clustering analyses detected seven different genetic groups (six for O. chrysogater and one for aquaculture O. mykiss) and a small amount of admixture between aquaculture and native trout with only two native genetic clusters showing exotic introgression. Latitude and precipitation of the driest month had a significant negative effect on genetic diversity and evidence of isolation by river resistance was detected, suggesting that the landscape heterogeneity was preventing trout dispersal, both for native and exotic individuals. Moreover, several outlier SNPs were identified as potentially implicated in local adaptation to local hydroclimatic variables. Overall, this study suggests that O. chrysogater may require conservation planning given i) exotic introgression from O. mykiss locally threatening O. chrysogater genetic integrity, and ii) putative local adaptation but low genetic diversity and hence probably reduced evolutionary potential especially in a climate change context.

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