scholarly journals Characterizing Ectomycorrhizal Fungal Community Structure and Function of Two Varieties of Pinus clausa That Differ in Disturbance History

Forests ◽  
2021 ◽  
Vol 12 (2) ◽  
pp. 219
Author(s):  
Megan A. Rúa
Keyword(s):  
Fungal Community ◽  
Single Species ◽  
Total Biomass ◽  
Disturbance History ◽  
Phenotypic Characteristics ◽  
Fungal Community Composition ◽  
Ecm Fungi ◽  
Host Genetic ◽  
And Function ◽  
Pinus Clausa

Despite the immense amount of diversity present in the soil biota, the ecological and evolutionary processes that regulate species diversity and abundance of ectomycorrhizal (ECM) fungi across space and time remain elusive. In forest ecosystems, ECM fungal diversity may be maintained by periodic disturbances which operate at different time scales due to their effects on host genetic and phenotypic characteristics and the associated environment. To investigate the degree to which these factors shape ECM fungal community composition and function, I sampled 10 independent sites for a pine species indicative of an endangered ecosystem, the Florida scrub, where disturbance history has driven the divergence of a single species into two genetically distinct varieties (Pinus clausa var. immuginata and var. clausa). A total of 300 ECM fungal species were identified based on rDNA ITS sequences, but each variety harbors different ECM species composition and function. A follow-up greenhouse experiment, in which the seed from each variety was grown in its own soil (“home”) and in the soil of the other variety (“away”), suggests these communities differentially impact the growth of their host seedlings. While var. clausa seedlings had the same total biomass regardless of soil origin, var. immuginata had higher biomass in their own soil compared to var. clausa. This is likely due to an increased number of ECM colonized tips in the home soil compared to in away soil. Taken together, these results may suggest different evolutionary histories where structure host genetic and phenotypic characteristics may be important for structuring their dynamics with ECM fungi.

scholarly journals Diversity and Structure of Soil Fungal Communities across Experimental Everglades Tree Islands

Diversity ◽  
2020 ◽  
Vol 12 (9) ◽  
pp. 324
Author(s):  
Brianna K. Almeida ◽  
Michael S. Ross ◽  
Susana L. Stoffella ◽  
Jay P. Sah ◽  
Eric Cline ◽  
...  
Keyword(s):  
Water Level ◽  
Fungal Community ◽  
Plant Pathogen ◽  
Fungal Diversity ◽  
Fungal Communities ◽  
Tree Islands ◽  
Fungal Community Composition ◽  
Everglades Tree Islands ◽  
And Function ◽  
Early Restoration

Fungi play prominent roles in ecosystem services (e.g., nutrient cycling, decomposition) and thus have increasingly garnered attention in restoration ecology. However, it is unclear how most management decisions impact fungal communities, making it difficult to protect fungal diversity and utilize fungi to improve restoration success. To understand the effects of restoration decisions and environmental variation on fungal communities, we sequenced soil fungal microbiomes from 96 sites across eight experimental Everglades tree islands approximately 15 years after restoration occurred. We found that early restoration decisions can have enduring consequences for fungal communities. Factors experimentally manipulated in 2003–2007 (e.g., type of island core) had significant legacy effects on fungal community composition. Our results also emphasized the role of water regime in fungal diversity, composition, and function. As the relative water level decreased, so did fungal diversity, with an approximately 25% decline in the driest sites. Further, as the water level decreased, the abundance of the plant pathogen–saprotroph guild increased, suggesting that low water may increase plant-pathogen interactions. Our results indicate that early restoration decisions can have long-term consequences for fungal community composition and function and suggest that a drier future in the Everglades could reduce fungal diversity on imperiled tree islands.

scholarly journals Redevelopment of biological activity in stripmine spoils: saprotrophic fungi – abstract

1988 ◽  
Vol 94 ◽  
pp. 85-85
Author(s):  
Suzanne Visser
Keyword(s):  
Fungal Community ◽  
Soil Disturbance ◽  
Plant Residues ◽  
Fungal Community Composition ◽  
Saprotrophic Fungi ◽  
Fungal Community Structure ◽  
Soil Fungal Community ◽  
And Function ◽  
The Impact ◽  
Decomposition Of Plant Residues

The impact of severe soil disturbance on soil fungal community composition and function and how this relates to the resultant decomposition/mineralisation process is very poorly understood. Consequently, research was conducted to determine: (a) to what degree fungal community structure and potential function are altered in a sub-alpine coal mine spoil (Luscar, Alberta), and (b) how do alterations in the fungal community affect patterns of fungal colonisation and decomposition of plant residues deposited on recently mined soil.

scholarly journals Fungal Community Shifts in Structure and Function across a Boreal Forest Fire Chronosequence

2015 ◽  
Vol 81 (22) ◽  
pp. 7869-7880 ◽  
Author(s):  
Hui Sun ◽  
Minna Santalahti ◽  
Jukka Pumpanen ◽  
Kajar Köster ◽  
Frank Berninger ◽  
...  
Keyword(s):  
Boreal Forest ◽  
Forest Fire ◽  
Fungal Community ◽  
Structure And Function ◽  
Fire Disturbance ◽  
Fungal Communities ◽  
Content Type ◽  
Soil Fungal Community ◽  
Ecm Fungi ◽  
And Function

ABSTRACTForest fires are a common natural disturbance in forested ecosystems and have a large impact on the microbial communities in forest soils. The response of soil fungal communities to forest fire is poorly documented. Here, we investigated fungal community structure and function across a 152-year boreal forest fire chronosequence using high-throughput sequencing of the internal transcribed spacer 2 (ITS2) region and a functional gene array (GeoChip). Our results demonstrate that the boreal forest soil fungal community was most diverse soon after a fire disturbance and declined over time. The differences in the fungal communities were explained by changes in the abundance of basidiomycetes and ascomycetes. Ectomycorrhizal (ECM) fungi contributed to the increase in basidiomycete abundance over time, with the operational taxonomic units (OTUs) representing the generaCortinariusandPilodermadominating in abundance. Hierarchical cluster analysis by using gene signal intensity revealed that the sites with different fire histories formed separate clusters, suggesting differences in the potential to maintain essential biogeochemical soil processes. The site with the greatest biological diversity had also the most diverse genes. The genes involved in organic matter degradation in the mature forest, in which ECM fungi were the most abundant, were as common in the youngest site, in which saprotrophic fungi had a relatively higher abundance. This study provides insight into the impact of fire disturbance on soil fungal community dynamics.

scholarly journals Tree Species Richness and Neighborhood Effects on Ectomycorrhizal Fungal Richness and Community Structure in Boreal Forest

2021 ◽  
Vol 12 ◽  
Author(s):  
Eveli Otsing ◽  
Sten Anslan ◽  
Elia Ambrosio ◽  
Julia Koricheva ◽  
Leho Tedersoo
Keyword(s):  
Species Richness ◽  
Boreal Forest ◽  
Community Composition ◽  
Fungal Community ◽  
Neighborhood Effects ◽  
Tree Species ◽  
Fungal Community Composition ◽  
Species Identity ◽  
Tree Species Richness ◽  
Ecm Fungi

Tree species identity is one of the key factors driving ectomycorrhizal (EcM) fungal richness and community composition in boreal and temperate forest ecosystems, but little is known about the influence of tree species combinations and their neighborhood effects on EcM communities. To advance our understanding of host plant effects on EcM fungi, the roots of silver birch, Scots pine, and Norway spruce were analyzed using high-throughput sequencing across mature boreal forest exploratory plots of monocultures and two- and three-species mixtures in Finland. Our analyses revealed that tree species identity was an important determinant of EcM fungal community composition, but tree species richness had no significant influence on EcM fungal richness and community composition. We found that EcM fungal community composition associated with spruce depends on neighboring tree species. Our study suggests that at a regional-scale tree species identity is the primary factor determining community composition of root-associated EcM fungi alongside with tree species composition effects on EcM fungal community of spruce in mixed stands.

scholarly journals Site-Dependent Relationships Between Fungal Community Composition, Plant Genotypic Diversity and Environmental Drivers in a Salix Biomass System

2021 ◽  
Vol 2 ◽  
Author(s):  
Stefanie Hoeber ◽  
Christel Baum ◽  
Martin Weih ◽  
Stefano Manzoni ◽  
Petra Fransson
Keyword(s):  
Community Composition ◽  
Fungal Community ◽  
Fungal Diversity ◽  
Genotypic Diversity ◽  
Fungal Communities ◽  
Environmental Drivers ◽  
Plant Genotype ◽  
Fungal Community Composition ◽  
Genotype Diversity ◽  
Ecm Fungi

Soil fungi are strongly affected by plant species or genotypes since plants modify their surrounding environment, but the effects of plant genotype diversity on fungal diversity and function have not been extensively studied. The interactive responses of fungal community composition to plant genotypic diversity and environmental drivers were investigated in Salix biomass systems, posing questions about: (1) How fungal diversity varies as a function of plant genotype diversity; (2) If plant genotype identity is a strong driver of fungal community composition also in plant mixtures; (3) How the fungal communities change through time (seasonally and interannually)?; and (4) Will the proportion of ECM fungi increase over the rotation? Soil samples were collected over 4 years, starting preplanting from two Salix field trials, including four genotypes with contrasting phenology and functional traits, and genotypes were grown in all possible combinations (four genotypes in Uppsala, Sweden, two in Rostock, Germany). Fungal communities were identified, using Pacific Biosciences sequencing of fungal ITS2 amplicons. We found some site-dependent relationships between fungal community composition and genotype or diversity level, and site accounted for the largest part of the variation in fungal community composition. Rostock had a more homogenous community structure, with significant effects of genotype, diversity level, and the presence of one genotype (“Loden”) on fungal community composition. Soil properties and plant and litter traits contributed to explaining the variation in fungal species composition. The within-season variation in composition was of a similar magnitude to the year-to-year variation. The proportion of ECM fungi increased over time irrespective of plant genotype diversity, and, in Uppsala, the 4-mixture showed a weaker response than other combinations. Species richness was generally higher in Uppsala compared with that in Rostock and increased over time, but did not increase with plant genotype diversity. This significant site-specificity underlines the need for consideration of diverse sites to draw general conclusions of temporal variations and functioning of fungal communities. A significant increase in ECM colonization of soil under the pioneer tree Salix on agricultural soils was evident and points to changed litter decomposition and soil carbon dynamics during Salix growth.

scholarly journals Toxins and Other Bioactive Metabolites in Deep Chlorophyll Layers Containing the Cyanobacteria Planktothrix cf. isothrix in Two Georgian Bay Embayments, Lake Huron

Toxins ◽  
2021 ◽  
Vol 13 (7) ◽  
pp. 445
Author(s):  
Arthur Zastepa ◽  
Todd R. Miller ◽  
L. Cynthia Watson ◽  
Hedy Kling ◽  
Susan B. Watson
Keyword(s):  
Thermal Stratification ◽  
Chemical Defence ◽  
Euphotic Zone ◽  
Lake Huron ◽  
Metabolic Inhibitors ◽  
Bioactive Metabolites ◽  
Total Biomass ◽  
Key Factors ◽  
Georgian Bay ◽  
And Function

The understanding of deep chlorophyll layers (DCLs) in the Great Lakes—largely reported as a mix of picoplankton and mixotrophic nanoflagellates—is predominantly based on studies of deep (>30 m), offshore locations. Here, we document and characterize nearshore DCLs from two meso-oligotrophic embayments, Twelve Mile Bay (TMB) and South Bay (SB), along eastern Georgian Bay, Lake Huron (Ontario, Canada) in 2014, 2015, and 2018. Both embayments showed the annual formation of DCLs, present as dense, thin, metalimnetic plates dominated by the large, potentially toxic, and bloom-forming cyanobacteria Planktothrix cf. isothrix. The contribution of P. cf. isothrix to the deep-living total biomass (TB) increased as thermal stratification progressed over the ice-free season, reaching 40% in TMB (0.6 mg/L at 9.5 m) and 65% in South Bay (3.5 mg/L at 7.5 m) in 2015. The euphotic zone in each embayment extended down past the mixed layer, into the nutrient-enriched hypoxic hypolimnia, consistent with other studies of similar systems with DCLs. The co-occurrence of the metal-oxidizing bacteria Leptothrix spp. and bactivorous flagellates within the metalimnetic DCLs suggests that the microbial loop plays an important role in recycling nutrients within these layers, particularly phosphate (PO4) and iron (Fe). Samples taken through the water column in both embayments showed measurable concentrations of the cyanobacterial toxins microcystins (max. 0.4 µg/L) and the other bioactive metabolites anabaenopeptins (max. ~7 µg/L) and cyanopeptolins (max. 1 ng/L), along with the corresponding genes (max. in 2018). These oligopeptides are known to act as metabolic inhibitors (e.g., in chemical defence against grazers, parasites) and allow a competitive advantage. In TMB, the 2018 peaks in these oligopeptides and genes coincided with the P. cf. isothrix DCLs, suggesting this species as the main source. Our data indicate that intersecting physicochemical gradients of light and nutrient-enriched hypoxic hypolimnia are key factors in supporting DCLs in TMB and SB. Microbial activity and allelopathy may also influence DCL community structure and function, and require further investigation, particularly related to the dominance of potentially toxigenic species such as P. cf. isothrix.

scholarly journals Earthworms drastically change fungal and bacterial communities during vermicomposting of sewage sludge

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Jorge Domínguez ◽  
Manuel Aira ◽  
Keith A. Crandall ◽  
Marcos Pérez-Losada
Keyword(s):  
Sewage Sludge ◽  
Community Composition ◽  
Fungal Community ◽  
High Throughput Sequencing ◽  
Wastewater Treatment Plants ◽  
Agricultural Practices ◽  
Fungal Community Composition ◽  
Earthworm Casts ◽  
Composition And Structure ◽  
Sustainable Agricultural Practices

AbstractWastewater treatment plants produce hundreds of million tons of sewage sludge every year all over the world. Vermicomposting is well established worldwide and has been successful at processing sewage sludge, which can contribute to alleviate the severe environmental problems caused by its disposal. Here, we utilized 16S and ITS rRNA high-throughput sequencing to characterize bacterial and fungal community composition and structure during the gut- and cast-associated processes (GAP and CAP, respectively) of vermicomposting of sewage sludge. Bacterial and fungal communities of earthworm casts were mainly composed of microbial taxa not found in the sewage sludge; thus most of the bacterial (96%) and fungal (91%) taxa in the sewage sludge were eliminated during vermicomposting, mainly through the GAP. Upon completion of GAP and during CAP, modified microbial communities undergo a succession process leading to more diverse microbiotas than those found in sewage sludge. Consequently, bacterial and fungal community composition changed significantly during vermicomposting. Vermicomposting of sewage resulted in a stable and rich microbial community with potential biostimulant properties that may aid plant growth. Our results support the use of vermicompost derived from sewage sludge for sustainable agricultural practices, if heavy metals or other pollutants are under legislation limits or adequately treated.

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