scholarly journals Update of Genetic Linkage Map and QTL Analysis for Growth Traits in Eucommia ulmoides Oliver

Forests ◽  
2020 ◽  
Vol 11 (3) ◽  
pp. 311
Author(s):  
Cangfu Jin ◽  
Zhouqi Li ◽  
Yu Li ◽  
Shuhui Wang ◽  
Long Li ◽  
...  
Keyword(s):  
Linkage Map ◽  
Qtl Analysis ◽  
Growth Traits ◽  
Tree Height ◽  
Genetic Mechanism ◽  
Eucommia Ulmoides ◽  
Polymorphic Markers ◽  
Blastx Search ◽  
Breeding Efficiency ◽  
Wind Sheltering

Eucommia ulmoides (Tu-chung) is an economically and ecologically important tree species which has attracted worldwide attention due to its application in pharmacology, landscaping, wind sheltering and sand fixation. Molecular marker technologies can elucidate the genetic mechanism and substantially improve the breeding efficiency of E. ulmoides. The current research updated the original linkage map, and quantitative trait loci (QTL) analysis was performed on tree growth traits measured over 10 consecutive years in an E. ulmoides F1 population (“Xiaoye” × “Qinzhong No.1”). In total, 452 polymorphic markers were scored from 365 simple sequence repeat (SSR) primers, with an average of 1.24 polymorphic markers per primer combination. The integrated map was 1913.29 cM (centimorgan) long, covering 94.10% of the estimated genome and with an average marker density of 2.20 cM. A total of 869 markers were mapped into 19 major independent linkage groups. Growth-related traits measured over 10 consecutive years showed a significant correlation, and 89 hypothetical QTLs were forecasted and divided into 27 distinct loci. Three traits for tree height, ground diameter and crown diameter detected 25 QTLs (13 loci), 32 QTLs (17 loci) and 15 QTLs (10 loci), respectively. Based on BLASTX search results in the NCBI database, six candidate genes were obtained. It is important to explore the growth-related genetic mechanism and lay the foundation for the genetic improvement of E. ulmoides at the molecular level.

scholarly journals Linkage mapping and QTL analysis of growth traits in Rhopilema esculentum

2022 ◽  
Vol 12 (1) ◽  
Author(s):  
Bailing Chen ◽  
Yulong Li ◽  
Meilin Tian ◽  
Hao Su ◽  
Wei Sun ◽  
...  
Keyword(s):  
Linkage Map ◽  
Qtl Analysis ◽  
Growth Traits ◽  
Snp Markers ◽  
Single Nucleotide ◽  
Fishery Resource ◽  
Marine Fishery ◽  
Factor Type ◽  
Von Willebrand ◽  
Willebrand Factor

AbstractR. esculentum is a popular seafood in Asian countries and an economic marine fishery resource in China. However, the genetic linkage map and growth-related molecular markers are still lacking, hindering marker assisted selection (MAS) for genetic improvement of R. esculentum. Therefore, we firstly used 2b-restriction site-associated DNA (2b-RAD) method to sequence 152 R. esculentum specimens and obtained 9100 single nucleotide polymorphism (SNP) markers. A 1456.34 cM linkage map was constructed using 2508 SNP markers with an average interval of 0.58 cM. Then, six quantitative trait loci (QTLs) for umbrella diameter and body weight were detected by QTL analysis based on the new linkage map. The six QTLs are located on four linkage groups (LGs), LG4, LG13, LG14 and LG15, explaining 9.4% to 13.4% of the phenotypic variation. Finally, 27 candidate genes in QTLs regions of LG 14 and 15 were found associated with growth and one gene named RE13670 (sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like) may play an important role in controlling the growth of R. esculentum. This study provides valuable information for investigating the growth mechanism and MAS breeding in R. esculentum.

Identification of a major locus conferring resistance to powdery mildew (Erysiphe polygoni DC) in mungbean (Vigna radiata L. Wilczek) by QTL analysis

Genome ◽  
2003 ◽  
Vol 46 (5) ◽  
pp. 738-744 ◽  
Author(s):  
M E Humphry ◽  
T Magner ◽  
C L McIntyre ◽  
E A.B Aitken ◽  
C J Liu
Keyword(s):  
Powdery Mildew ◽  
Linkage Map ◽  
Qtl Analysis ◽  
Vigna Radiata ◽  
Mapping Population ◽  
Susceptible Variety ◽  
Resistance Response ◽  
Causal Organism ◽  
Major Locus ◽  
Erysiphe Polygoni

A major locus conferring resistance to the causal organism of powdery mildew, Erysiphe polygoni DC, in mungbean (Vigna radiata L. Wilczek) was identified using QTL analysis with a population of 147 recombinant inbred individuals. The population was derived from a cross between 'Berken', a highly susceptible variety, and ATF 3640, a highly resistant line. To test for response to powdery mildew, F7 and F8 lines were inoculated by dispersing decaying mungbean leaves with residual conidia of E. polygoni amongst the young plants to create an artificial epidemic and assayed in a glasshouse facility. To generate a linkage map, 322 RFLP clones were tested against the two parents and 51 of these were selected to screen the mapping population. The 51 probes generated 52 mapped loci, which were used to construct a linkage map spanning 350 cM of the mungbean genome over 10 linkage groups. Using these markers, a single locus was identified that explained up to a maximum of 86% of the total variation in the resistance response to the pathogen.Key words: mungbean, powdery mildew, Erysiphe polygoni, QTL, molecular markers.

scholarly journals Field Evaluation of Populus deltoides Bartr. ex Marsh. at Two Sites in Indo-gangetic Plains of India

2010 ◽  
Vol 59 (1-6) ◽  
pp. 1-7 ◽  
Author(s):  
G. P. S. Dhillon ◽  
Avtar Singh ◽  
Pritpal Singh ◽  
D. S. Sidhu
Keyword(s):  
Populus Deltoides ◽  
Growth Traits ◽  
Tree Height ◽  
Field Evaluation ◽  
Site Conditions ◽  
Genetic Advance ◽  
Gangetic Plains ◽  
Diameter At Breast Height ◽  
Breast Height ◽  
Northwestern India

Abstract Results from clonal trials of Populus deltoides conducted in two distinct agroclimatic regions of Punjab in northwestern India are reported and discussed. Sixteen clones were evaluated at Hambran and Bathinda where commonly grown clone ‘G-48’ was considered as control. Significant differences among clones (P < 0.001) were observed for diameter at breast height (DBH), tree height and volume at the age of four and six years under both the site conditions. Clone ‘L-48’ ranked first for volume at six year age at both sites and was followed by clone ‘Ranikhet’. The respective superiority for volume of these clones over control was 44.8 and 23.2 per cent at Hambran and 72.5 and 30.7 per cent at Bathinda. All growth traits registered significantly higher values at Hambran in comparison to those at Bathinda. Clone x site interaction was also significant (P < 0.001). The clones ‘L-168’, ‘154/86’, ‘Solan-z’ and ‘170/88’ experienced huge fluctuation in ranking between sites for volume at 6-year age. The DBH and height showed significant and positive correlation with each other and with tree volume at all the age combinations. The clonal mean heritability was quite high both at Hambran (0.73-0.86) and Bathinda (0.80-0.95). The genetic advance were the highest for volume (33.34-64.26%) and the lowest (10.65-22.79%) in case of height.

Growth and wood properties of genetically improved loblolly pine: propagation type comparison and genetic parameters

2014 ◽  
Vol 44 (3) ◽  
pp. 263-272 ◽  
Author(s):  
Finto Antony ◽  
Laurence R. Schimleck ◽  
Lewis Jordan ◽  
Benjamin Hornsby ◽  
Joseph Dahlen ◽  
...  
Keyword(s):  
Wood Density ◽  
Loblolly Pine ◽  
Growth Traits ◽  
Genetic Correlations ◽  
Tree Height ◽  
Wood Properties ◽  
Genetically Improved ◽  
Growth Properties ◽  
Wood Traits ◽  
Clonal Lines

The use of clonal varieties in forestry offers great potential to improve growth traits (quantity) and wood properties (quality) of loblolly pine (Pinus taeda L.). Loblolly pine trees established via somatic embryogenesis (clones), full-sib zygotic crosses, and half-sib zygotic open-pollinated families were sampled to identify variation in growth and wood properties among and within clonal lines and zygotic controls. Increment cores 5 mm in diameter were collected at age 4 from a total of 2615 trees. Growth properties (diameter at 1.4 m and total tree height) and wood properties (whole-core density, latewood and earlywood density, and latewood percent) were measured for each tree sampled in the study. Overall, growth properties were better for full-sib seedling than for clonal lines, whereas wood density was higher for clonal lines than full-sib and open-pollinated seedlings. However, there were clonal lines with better growth and higher wood density. Clonal repeatability of both growth and wood properties across sampled sites and genetic correlations between growth and wood traits were determined, with higher repeatability observed for wood traits compared with growth traits. Significant genetic correlations were observed for tree height and wood properties, whereas weak correlations were observed for diameter and wood properties.

Genetic resistance to western gall rust in jack pine and its relationship with tree height growth

2015 ◽  
Vol 45 (8) ◽  
pp. 970-977 ◽  
Author(s):  
Y.H. Weng ◽  
P. Lu ◽  
Q.F. Meng ◽  
M. Krasowski
Keyword(s):  
Growth Traits ◽  
Tree Height ◽  
Jack Pine ◽  
Height Growth ◽  
Progeny Testing ◽  
Gene Effects ◽  
Individual Tree ◽  
Improvement Programs ◽  
Heritability Estimates ◽  
Tree Height Growth

Developing resistance to western gall rust (WGR) is important for maintaining healthy and productive jack pine plantations. In this study, we estimated genetic parameters of resistance to WGR and its relationship with tree height growth, based on data collected from three second-generation full-sib progeny testing series of jack pine planted in New Brunswick, Canada. Results indicated that (i) resistance to WGR in jack pine was controlled by both additive and dominance gene effects, with the latter playing a greater role; (ii) narrow-sense heritability estimates for resistance to WGR were low (mean = 0.05; series range = 0.00∼0.09), and broad-sense heritability estimates were moderate on an individual-tree basis (mean = 0.53) and considerably higher on the full-sib family mean basis (mean = 0.87); (iii) additive genetic correlation between tree height growth and WGR incidence was low (≤0.06) in two series and only slightly higher and favorable (–0.19) in one series, suggesting that selection on growth traits would not negatively affect WGR resistance; and (iv) mid-parental additive genetic and dominance effects on WGR were empirically correlated (>0.65), indicating that incorporating breeding for WGR resistance into current jack pine tree improvement programs with a seed orchard approach could partly capture the benefit from dominance effects. Although genetic gains in WGR resistance could be realized through various breeding and deployment schemes, it appeared that rapid improvement could be achieved through backward selection on full-sib family means.

scholarly journals Breeding value of Norway spruce (Picea abies [L.] Karst.)

2012 ◽  
Vol 50 (No. 1) ◽  
pp. 17-23
Author(s):  
Rożkowski KR
Keyword(s):  
Survival Rate ◽  
Norway Spruce ◽  
Growth Traits ◽  
Block Design ◽  
Basal Area ◽  
Tree Height ◽  
Breeding Value ◽  
Cross Sectional ◽  
Qualitative Traits ◽  
Crown Density

This is the first report on measurements and observations of an experimental plot of 35-year-old Norway spruce, established in 1970 by the Institute of Dendrology at K&oacute;rnik, where progenies of 22 plustrees from the Kłodzko Forest District were planted. The experiment was established in an incomplete block design of 20 families with 3 replications. Survival rate and growth traits determining productivity (plant height or basal area &ndash; stem cross-sectional area at breast height per 1&nbsp;ha) were assessed in several years, and qualitative traits (trunk straightness; degree of natural pruning; thickness, length and angle of branches; crown density; presence of galls caused by the aphids Adelges laricis Vall. and Sacchiphantes viridis Ratz.) were evaluated once in 2001. Analysis of variance revealed significant differences between the half-sib families in survival rate and productivity but no significant differences in qualitative traits. Statistically significant positive correlations were found between trunk straightness at the age of<br />&nbsp;36 years and height of 2-year-old seedlings in the nursery, and between the degree of natural pruning at the age of 36 years and both tree height at the age of 9 years and basal area at the age of 13 years.

High density SNP and SSR linkage map and QTL analysis for resistance to black spot in segregating rose population

2020 ◽  
pp. 191-198 ◽  
Author(s):  
D.C. Lopez Arias ◽  
A. Chastellier ◽  
T. Thouroude ◽  
M. Leduc ◽  
F. Foucher ◽  
...  
Keyword(s):  
Linkage Map ◽  
Qtl Analysis ◽  
Black Spot ◽  
High Density
Sign in / Sign up

Export Citation Format

Share Document