scholarly journals Employing New Hybrid Adaptive Wavelet-Based Transform and Histogram Packing to Improve JP3D Compression of Volumetric Medical Images

Entropy ◽  
2020 ◽  
Vol 22 (12) ◽  
pp. 1385
Author(s):  
Roman Starosolski
Keyword(s):  
Compression Ratio ◽  
Medical Images ◽  
Three Dimensional ◽  
Discrete Wavelet ◽  
Adaptive Wavelet ◽  
Entropy Estimation ◽  
New Methods ◽  
Adaptive Parameter ◽  
3D Dwt ◽  
Volumetric Medical Images

The primary purpose of the reported research was to improve the discrete wavelet transform (DWT)-based JP3D compression of volumetric medical images by applying new methods that were only previously used in the compression of two-dimensional (2D) images. Namely, we applied reversible denoising and lifting steps with step skipping to three-dimensional (3D)-DWT and constructed a hybrid transform that combined 3D-DWT with prediction. We evaluated these methods using a test-set containing images of modalities: Computed Tomography (CT), Magnetic Resonance Imaging (MRI), and Ultrasound (US). They proved effective for 3D data resulting in over two times greater compression ratio improvements than competitive methods. While employing fast entropy estimation of JP3D compression ratio to reduce the cost of image-adaptive parameter selection for the new methods, we found that some MRI images had sparse histograms of intensity levels. We applied the classical histogram packing (HP) and found that, on average, it resulted in greater ratio improvements than the new sophisticated methods and that it could be combined with these new methods to further improve ratios. Finally, we proposed a few practical compression schemes that exploited HP, entropy estimation, and the new methods; on average, they improved the compression ratio by up to about 6.5% at an acceptable cost.

scholarly journals Hybrid DWT-DCT compression algorithm & a new flipping block with an adaptive RLE method for high medical image compression ratio

2018 ◽  
Vol 7 (4) ◽  
pp. 4602
Author(s):  
S. Rafea ◽  
Dr. N. H. Salman
Keyword(s):  
Compression Ratio ◽  
Medical Images ◽  
Compression Algorithm ◽  
Discrete Wavelet ◽  
High Compression Ratio ◽  
Huge Number ◽  
X Ray ◽  
Scalar Quantization ◽  
Number Of Zeros ◽  
Frequency Components

Huge number of medical images are generated and needs for more storage capacity and bandwidth for transferring over the networks. Hybrid DWT-DCT compression algorithm is applied to compress the medical images by exploiting the features of both techniques. Discrete Wavelet Transform (DWT) coding is applied to image YCbCr color model which decompose image bands into four subbands (LL, HL, LH and HH). The LL subband is transformed into low and high frequency components using Discrete Cosine Transform (DCT) to be quantize by scalar quantization that was applied on all image bands, the quantization parameters where reduced by half for the luminance band while it is the same for the chrominance bands to preserve the image quality, the zigzag scan is applied on the quantized coefficients and the output are encoded using DPCM, shift optimizer and shift coding for DC while adaptive RLE, shift optimizer then shift coding applied for AC, the other subbands; LH, HL and HH are compressed using the scalar quantization, Quadtree and shift optimizer then shift coding. In this paper, a new flipping block with an adaptive RLE is proposed and applied for image enhancement. After applying DCT system and scalar quantization, huge number of zeros produced with less number of other values, so an adaptive RLE is used to encode this RUN of zeros which results with more compression.Standard medical images are selected to be used as testing image materials such as CT-Scan, X-Ray, MRI these images are specially used for researches as a testing samples. The results showed high compression ratio with high quality reconstructed images  

scholarly journals Semantic Segmentation of 3D Medical Images with 3D Convolutional Neural Networks

2020 ◽  
Vol 23 (1) ◽  
Author(s):  
Alejandra Márquez Herrera ◽  
Alex J. Cuadros-Vargas ◽  
Helio Pedrini
Keyword(s):  
Neural Network ◽  
Convolutional Neural Network ◽  
Loss Function ◽  
Medical Images ◽  
Three Dimensional ◽  
Ground Truth ◽  
Semantic Segmentation ◽  
Volumetric Medical Images ◽  
Magnetic Resonance Imaging Mri ◽  
3D Cnn

A neural network is a mathematical model that is able to perform a task automatically or semi-automatically after learning the human knowledge that we provided. Moreover, a Convolutional Neural Network (CNN) is a type of neural network that has shown to efficiently learn tasks related to the area of image analysis, such as image segmentation, whose main purpose is to find regions or separable objects within an image. A more specific type of segmentation, called semantic segmentation, guarantees that each region has a semantic meaning by giving it a label or class. Since CNNs can automate the task of image semantic segmentation, they have been very useful for the medical area, applying them to the segmentation of organs or abnormalities (tumors). This work aims to improve the task of binary semantic segmentation of volumetric medical images acquired by Magnetic Resonance Imaging (MRI) using a pre-existing Three-Dimensional Convolutional Neural Network (3D CNN) architecture. We propose a formulation of a loss function for training this 3D CNN, for improving pixel-wise segmentation results. This loss function is formulated based on the idea of adapting a similarity coefficient, used for measuring the spatial overlap between the prediction and ground truth, and then using it to train the network. As contribution, the developed approach achieved good performance in a context where the pixel classes are imbalanced. We show how the choice of the loss function for training can affect the nal quality of the segmentation. We validate our proposal over two medical image semantic segmentation datasets and show comparisons in performance between the proposed loss function and other pre-existing loss functions used for binary semantic segmentation.

ROI-BASED 3D HUMAN BRAIN MAGNETIC RESONANCE IMAGES COMPRESSION USING ADAPTIVE MESH DESIGN AND REGION-BASED DISCRETE WAVELET TRANSFORM

2010 ◽  
Vol 08 (03) ◽  
pp. 407-430 ◽  
Author(s):  
EMAD FATEMIZADEH ◽  
PARISA SHOOSHTARI
Keyword(s):  
Wavelet Transform ◽  
Discrete Wavelet Transform ◽  
Compression Ratio ◽  
Medical Images ◽  
Region Of Interest ◽  
Adaptive Mesh ◽  
Magnetic Resonance Images ◽  
Discrete Wavelet ◽  
Object Based ◽  
The Difference

Due to the large volume required for medical images for transmission and archiving purposes, the compression of medical images is known as one of the main concepts of medical image processing. Lossless compression methods have the drawback of a low compression ratio. In contrast, lossy methods have a higher compression ratio and suffer from lower quality of the reconstructed images in the receiver. Recently, some selective compression methods have been proposed in which the main image is divided into two separate regions: Region of Interest (ROI), which should be compressed in a lossless manner, and Region of Background (ROB), which is compressed in a lossy manner with a lower quality. In this research, we introduce a new selective compression method to compress 3D brain MR images. To this aim, we design an adaptive mesh on the first slice and estimate the gray levels of the next slices by computing the mesh element's deformations. After computing the residual image, which is the difference between the main image and the estimated one, we transform it to the wavelet domain using a region-based discrete wavelet transform (RBDWT). Finally, the wavelet coefficients are coded by an object-based SPIHT coder.

scholarly journals Robust Classification Technique for Hyperspectral Images Based on 3D-Discrete Wavelet Transform

2021 ◽  
Vol 13 (7) ◽  
pp. 1255
Author(s):  
R Anand ◽  
S Veni ◽  
J Aravinth
Keyword(s):  
Wavelet Transform ◽  
Discrete Wavelet Transform ◽  
Performance Metrics ◽  
Hyperspectral Image ◽  
Research Work ◽  
Three Dimensional ◽  
Hyperspectral Images ◽  
Support Vector ◽  
Discrete Wavelet ◽  
3D Dwt

Hyperspectral image classification is an emerging and interesting research area that has attracted several researchers to contribute to this field. Hyperspectral images have multiple narrow bands for a single image that enable the development of algorithms to extract diverse features. Three-dimensional discrete wavelet transform (3D-DWT) has the advantage of extracting the spatial and spectral information simultaneously. Decomposing an image into a set of spatial–spectral components is an important characteristic of 3D-DWT. It has motivated us to perform the proposed research work. The novelty of this work is to bring out the features of 3D-DWT applicable to hyperspectral images classification using Haar, Fejér-Korovkin and Coiflet filters. Three-dimensional-DWT is implemented with the help of three stages of 1D-DWT. The first two stages of 3D-DWT are extracting spatial resolution, and the third stage is extracting the spectral content. In this work, the 3D-DWT features are extracted and fed to the following classifiers (i) random forest (ii) K-nearest neighbor (KNN) and (iii) support vector machine (SVM). Exploiting both spectral and spatial features help the classifiers to provide a better classification accuracy. A comparison of results was performed with the same classifiers without DWT features. The experiments were performed using Salinas Scene and Indian Pines hyperspectral datasets. From the experiments, it has been observed that the SVM with 3D-DWT features performs better in terms of the performance metrics such as overall accuracy, average accuracy and kappa coefficient. It has shown significant improvement compared to the state of art techniques. The overall accuracy of 3D-DWT+SVM is 88.3%, which is 14.5% larger than that of traditional SVM (77.1%) for the Indian Pines dataset. The classification map of 3D-DWT + SVM is more closely related to the ground truth map.

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