scholarly journals Lack of Population Genetic Structuring in Ocelots (Leopardus pardalis) in a Fragmented Landscape

Diversity ◽  
2015 ◽  
Vol 7 (3) ◽  
pp. 295-306 ◽  
Author(s):  
Marina Figueiredo ◽  
Marcelo Cervini ◽  
Fernando Rodrigues ◽  
Eduardo Eizirik ◽  
Fernando Azevedo ◽  
...  
Keyword(s):  
Population Genetic ◽  
Fragmented Landscape ◽  
Genetic Structuring ◽  
Leopardus Pardalis

The potential impact of mining on population genetic variation in the Banded Ironstone Formation endemic Tetratheca erubescens (Elaeocarpaceae)

2019 ◽  
Vol 67 (3) ◽  
pp. 172 ◽  
Author(s):  
Siegfried L. Krauss ◽  
Janet M. Anthony
Keyword(s):  
Genetic Variation ◽  
Population Genetic ◽  
Allelic Variation ◽  
Continuous Distribution ◽  
Genetic Structuring ◽  
Expected Heterozygosity ◽  
Spatial Structuring ◽  
Genetic Clusters ◽  
Population Genetic Variation ◽  
Entire Distribution

Tetratheca erubescens is a narrowly endemic species including ~6300 plants restricted to a 2-km2 distribution on the south Koolyanobbing Range Banded Ironstone Formation (BIF) in Western Australia. A key objective of the present study was to characterise population genetic variation, and its spatial structuring across the entire distribution of T. erubescens, to enable a quantification of genetic variation that may be affected by proposed mining of the BIF. In total, 436 plants (~30 at each of 14 sites) from across the entire distribution were sampled, genotyped and scored for allelic variation at 11 polymorphic microsatellite loci. Fifty-nine alleles were detected (mean alleles per locus=5.36, range 2–10), and observed heterozygosity was low to moderate and typically lower than expected heterozygosity across all loci (mean observed heterozygosity (Ho)=0.41, mean expected heterozygosity (He)=0.48). Given the restricted distribution of T. erubescens, overall genetic structuring was surprisingly strong (overall FST=0.098). A range-wide spatial autocorrelation analysis indicated a significant positive genetic correlation at distances up to 450m, largely corresponding to the scale of more-or-less continuous distribution within each of two geographic clusters. In support, a STRUCTURE analysis identified an optimal number of genetic clusters as K=2, with assignment of individuals to one of two genetic clusters corresponding with the main geographic clusters. The genetic impact of proposed mining on T. erubescens was assessed on the basis of identifying plants within the proposed mine footprint (all plants from 4 of 14 sites). Repeating analyses of genetic variation after removal of these samples, and comparing to the complete dataset adjusted for sample size, resulted in the loss of one (very rare: overall frequency=0.001) allele (i.e. 58 of 59 alleles (98.3%) were recovered). All other parameters of genetic variation (mean Na, Ne, I, Ho, He, F) were unaffected. Consequently, although up to 22% of all plants fall within the mine footprint and, therefore, may be lost, <2% of alleles detected will be lost, and other genetic parameters remained unaffected. Although these results suggest that the proposed mining will result in a negligible impact on the assessed genetic variation and its spatial structuring in T. erubescens, further research on impacts to, and management of, quantitative genetic variation and key population genetic processes is required.

scholarly journals Absence of Population Genetic Structure Among Breeding Colonies of the Waved Albatross

The Condor ◽  
2006 ◽  
Vol 108 (2) ◽  
pp. 440-445 ◽  
Author(s):  
Kathryn P. Huyvaert ◽  
Patricia G. Parker
Keyword(s):  
Genetic Variation ◽  
Gene Flow ◽  
Genetic Structure ◽  
Population Genetic Structure ◽  
Population Genetic ◽  
Breeding Population ◽  
Genetic Structuring ◽  
Galapagos Archipelago ◽  
Phoebastria Irrorata ◽  
Waved Albatrosses

Abstract We used four variable microsatellite loci to examine the distribution of genetic variation and degree of genetic structuring among three subcolonies of Waved Albatrosses (Phoebastria irrorata). The breeding population of this species is almost entirely limited to the island of Española in the Galápagos Archipelago. Such strong philopatry could lead to population genetic structure among subcolonies on the island. Pairwise values of the FST analog, θ, calculated from microsatellite genotypes, were all less than 0.012, indicating little genetic differentiation and the presence of gene flow throughout the population.

Population genetic structure inMyrtus communisL. in a chronically fragmented landscape in the Mediterranean: can gene flow counteract habitat perturbation?

Plant Biology ◽  
2009 ◽  
Vol 11 (3) ◽  
pp. 442-453 ◽  
Author(s):  
R. G. Albaladejo ◽  
L. F. Carrillo ◽  
A. Aparicio ◽  
J. F. Fernández-Manjarrés ◽  
J. P. González-Varo
Keyword(s):  
Gene Flow ◽  
Genetic Structure ◽  
Population Genetic Structure ◽  
Population Genetic ◽  
Fragmented Landscape ◽  
The Mediterranean

Population genetics and conservation of the critically endangered Clematis acerifolia (Ranunculaceae)

2005 ◽  
Vol 83 (10) ◽  
pp. 1248-1256 ◽  
Author(s):  
J. López-Pujol ◽  
F.-M. Zhang ◽  
S. Ge
Keyword(s):  
Genetic Diversity ◽  
Population Genetic ◽  
Critically Endangered ◽  
Ex Situ ◽  
Genetic Structuring ◽  
Long Term Storage ◽  
Hardy Weinberg Equilibrium ◽  
Term Storage

Allozyme electrophoresis was used to evaluate the levels of genetic diversity and population genetic structure of the critically endangered Clematis acerifolia Maximowicz (Ranunculaceae), a narrow endemic species in China. On the basis of variation at 19 putative loci in nine populations covering the entire distribution of this species, low values of genetic diversity were detected (P = 20.5%, A = 1.27, and He = 0.072). A significant deficiency of heterozygotes was found in all populations. Most loci showed deviations from the Hardy–Weinberg equilibrium, probably as a result of population genetic structuring. The high genetic divergence among populations (FST = 0.273) can be interpreted as an effect of the extinction of local populations and genetic drift within extant populations, and has probably been enhanced by habitat fragmentation in recent decades. Threats to this species are mainly anthropogenic (road works, construction of holiday resorts, and extraction activities), although stochastic risks cannot be ignored. Therefore, to preserve extant genetic variation of C. acerifolia, in situ strategies, such as the preservation of its habitat or at least the most diverse populations, and ex situ measures, such as the collection and long-term storage of seeds, should be adopted.

Significant population genetic structuring but a lack of phylogeographic structuring in the endemic Tasmanian tree frog (Litoria burrowsae)

2014 ◽  
Vol 62 (3) ◽  
pp. 238 ◽  
Author(s):  
Z. Y. Zhang ◽  
S. Cashins ◽  
A. Philips ◽  
C. P. Burridge
Keyword(s):  
Population Genetic ◽  
Nuclear Dna ◽  
Isolation By Distance ◽  
Global Climate ◽  
Haplotype Diversity ◽  
Habitat Destruction ◽  
Phylogeographic Structure ◽  
Tree Frog ◽  
Genetic Structuring ◽  
Management Units

Conservation of frogs is of global concern, owing to declines resulting from habitat destruction, global climate change, and disease. Knowledge of genetic variation in frog species is therefore desirable for the identification of management units. Here we surveyed mitochondrial DNA sequence variation in the Tasmanian endemic hylid frog Litoria burrowsae, which is infected by chytrid fungus, Batrachochytrium dendrobatidis, and may be declining. Neither phylogeographic structure nor deep phylogenetic divergence was detected in the species, although its populations were highly differentiated with respect to haplotype frequencies. The low-haplotype diversity in L. burrowsae suggests a recent bottleneck in the species, and population genetic structuring may reflect isolation by distance as well as founder effects associated with range expansion. Three putative management units were identified that require verification based on nuclear DNA variation and adaptation to local environments.

scholarly journals Population Genetic Patterns of Threatened European Mudminnow (Umbra krameri Walbaum, 1792) in a Fragmented Landscape: Implications for Conservation Management

PLoS ONE ◽  
2015 ◽  
Vol 10 (9) ◽  
pp. e0138640 ◽  
Author(s):  
Péter Takács ◽  
Tibor Erős ◽  
András Specziár ◽  
Péter Sály ◽  
Zoltán Vitál ◽  
...  
Keyword(s):  
Population Genetic ◽  
Conservation Management ◽  
Fragmented Landscape ◽  
Genetic Patterns ◽  
Umbra Krameri

Fine-scale population genetic structuring of bottlenose dolphins in Irish coastal waters

2011 ◽  
Vol 14 (4) ◽  
pp. 342-353 ◽  
Author(s):  
L. Mirimin ◽  
R. Miller ◽  
E. Dillane ◽  
S. D. Berrow ◽  
S. Ingram ◽  
...  
Keyword(s):  
Coastal Waters ◽  
Population Genetic ◽  
Bottlenose Dolphins ◽  
Fine Scale ◽  
Genetic Structuring ◽  
Scale Population
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