scholarly journals Genetic Diversity of Ancient Camellia sinensis (L.) O.Kuntze in Sandu County of Guizhou Province in China

Diversity ◽  
2021 ◽  
Vol 13 (6) ◽  
pp. 276
Author(s):  
Yichen Zhao ◽  
Runying Wang ◽  
Qing Liu ◽  
Xuan Dong ◽  
De-Gang Zhao
Keyword(s):  
Phenotypic Diversity ◽  
Polymorphic Information Content ◽  
Economic Value ◽  
Alcoholic Beverage ◽  
Tea Plant ◽  
Guizhou Province ◽  
Plant Germplasm ◽  
Efficient Management ◽  
The Mean ◽  
Phenotypic Methods

The ancient tea plant germplasm is an important resource for breeding new tea plant varieties and has great economic value. However, due to man-made and natural disturbances, it has become endangered. In order to have a better management of the conserved tea plant germplasm, it is a requirement to understand the genetic and phenotypic diversity. The aim of this study was to evaluate the genetic and phenotypic diversity of 145 ancient tea plant germplasm resources from five populations in Sandu County of Guizhou province in China. To explore the population genetics of tea plant, we successfully identified 15 simple sequence repeat (SSR) markers, which were highly polymorphic. Additionally, we applied traditional phenotypic methods to evaluate the tea plant diversity. The results suggested that the genetic and phenotypic diversity were relatively high. A total of 96 alleles were identified, and the mean polymorphic information content (PIC) value was found to be 0.66. The analysis of molecular variance (AMOVA) showed that genetic variation within the populations was greater than among the populations. Overall, our results are the valuable baseline data in developing more efficient management and breeding plans for one of the most popular non-alcoholic beverage crops, the tea plant species.

scholarly journals The Recreational Trail of the El Caminito del Rey Natural Tourist Attraction, Spain: Determination of Hikers’ Flow

2021 ◽  
Vol 18 (4) ◽  
pp. 1809
Author(s):  
Gemma María Gea-García ◽  
Carmelo Fernández-Vicente ◽  
Francisco J. Barón-López ◽  
Jesús Miranda-Páez
Keyword(s):  
Eye Tracking ◽  
Circulation Pattern ◽  
Travel Speed ◽  
Outdoor Activity ◽  
Efficient Management ◽  
Exponential Increase ◽  
The Mean ◽  
Tracking Device ◽  
Tracking Devices

Hiking is a very popular outdoor activity, and has led to an exponential increase in the number of visitors to natural spaces. The objective of this study was to analyze the circulation pattern of visitors to the Caminito del Rey trail, based on the three zones into which the trail can be divided. The sample consisted of 1582 hikers distributed into three different profiles. Of these, 126 utilized an eye-tracking device during the hike, while, for the rest (1456), only their travel speed along the trail was recorded. The use of eye tracking devices identified a greater number of interesting landscapes located in zones 1 and 3 of the trail, and it was observed that the mean travel speed was greater for zone 2 (42.31 m/min) (p < 0.01). Additionally, when the three different visitor profiles were analyzed, significant differences were found between the mean travel speeds according to sectors (p < 0.05). This information is crucial for more efficient management of the trail, as it allows for the development of measures to control and regulate the flow of visitors according to zone, and the design of additional strategies to increase the awareness of the hiker about specific areas of the hike.

scholarly journals Population structure of Chinese southwest wheat germplasms resistant to stripe rust and powdery mildew using the DArT-seq technique

2018 ◽  
Vol 48 (4) ◽  
Author(s):  
Tianqing Chen ◽  
Piyada Alisha Tantasawat ◽  
Wei Wang ◽  
Xu Gao ◽  
Liyi Zhang
Keyword(s):  
Population Structure ◽  
Disease Resistance ◽  
Polymorphic Information Content ◽  
Wheat Breeding ◽  
Wheat Varieties ◽  
Group I ◽  
Population Structure Analysis ◽  
Specific Allele ◽  
The Mean ◽  
Different Origins

ABSTRACT: Understanding genetic variability in existing wheat accessions is critical for collection, conservation and use of wheat germplasms. In this study, 138 Chinese southwest wheat accessions were investigated by genotyping using two resistance gene makers (Pm21 and Yr26) and DArT-seq technique. Finally, about 50% cultivars (lines) amplified the specific allele for the Yr26 gene (Gwm11) and 40.6% for the Pm21 gene (SCAR1265). By DArT-seq analysis, 30,485 markers (6486 SNPs and 23999 DArTs) were obtained with mean polymorphic information content (PIC) value 0.33 and 0.28 for DArT and SNP marker, respectively. The mean Dice genetic similarity coefficient (GS) was 0.72. Two consistent groups of wheat varieties were identified using principal coordinate analysis (PCoA) at the level of both the chromosome 6AS and the whole-genome, respectively. Group I was composed of non-6VS/6AL translocation lines of different origins, while Group II was composed of 6VS/6AL translocation (T6VS/6AL) lines, most of which carried the Yr26 and Pm21 genes and originated from Guizhou. Besides, a model-based population structure analysis revealed extensive admixture and further divided these wheat accessions into six subgroups (SG1, SG2, SG3, SG4, SG5 and SG6), based on their origin, pedigree or disease resistance. This information is useful for wheat breeding in southwestern China and association mapping for disease resistance using these wheat germplasms in future.

Assessment of phenotypic diversity in the USDA, National Plant Germplasm System (NPGS) guayule germplasm collection

2022 ◽  
Vol 175 ◽  
pp. 114303
Author(s):  
V.M.V. Cruz ◽  
D.A. Dierig ◽  
A. Lynch ◽  
K. Hunnicutt ◽  
T.R. Sullivan ◽  
...  
Keyword(s):  
Phenotypic Diversity ◽  
Germplasm Collection ◽  
Plant Germplasm ◽  
National Plant Germplasm System

scholarly journals Optimal use of SSR markers for varietal identification of upland cotton

2015 ◽  
Vol 50 (7) ◽  
pp. 571-581 ◽  
Author(s):  
Guilherme da Silva Pereira ◽  
Ana Luíza Ramos Cazé ◽  
Michelle Garcia da Silva ◽  
Vanessa Cavalcante Almeida ◽  
Fernanda Oliveira da Cunha Magalhães ◽  
...  
Keyword(s):  
Genetic Distance ◽  
Ssr Markers ◽  
Polymorphic Information Content ◽  
Group Method ◽  
Discrimination Power ◽  
Arithmetic Average ◽  
Pair Group ◽  
Varietal Identification ◽  
The World ◽  
The Mean

Abstract: The objective of this work was to identify polymorphic simple sequence repeat (SSR) markers for varietal identification of cotton and evaluation of the genetic distance among the varieties. Initially, 92 SSR markers were genotyped in 20 Brazilian cotton cultivars. Of this total, 38 loci were polymorphic, two of which were amplified by one primer pair; the mean number of alleles per locus was 2.2. The values of polymorphic information content (PIC) and discrimination power (DP) were, on average, 0.374 and 0.433, respectively. The mean genetic distance was 0.397 (minimum of 0.092 and maximum of 0.641). A panel of 96 varieties originating from different regions of the world was assessed by 21 polymorphic loci derived from 17 selected primer pairs. Among these varieties, the mean genetic distance was 0.387 (minimum of 0 and maximum of 0.786). The dendrograms generated by the unweighted pair group method with arithmetic average (UPGMA) did not reflect the regions of Brazil (20 genotypes) or around the world (96 genotypes), where the varieties or lines were selected. Bootstrap resampling shows that genotype identification is viable with 19 loci. The polymorphic markers evaluated are useful to perform varietal identification in a large panel of cotton varieties and may be applied in studies of the species diversity.

scholarly journals Review: Genetic diversity studies using microsatellite markers and their contribution in supporting sustainable sheep breeding programs

2017 ◽  
Vol 1 (01) ◽  
pp. 46-51
Author(s):  
OUMER SHERIFF ◽  
KEFYALEW ALEMAYEHU
Keyword(s):  
Genetic Diversity ◽  
Microsatellite Markers ◽  
Polymorphic Information Content ◽  
Domestic Sheep ◽  
Breeding Programs ◽  
Sheep Breeding ◽  
Population Structures ◽  
The Mean ◽  
Tree Building ◽  
Diversity Studies

Sheriff O, Alemayehu K. 2017. Review: Genetic diversity studies using microsatellite markers and their contribution in supporting sustainable sheep breeding programs. Asian J Agric 1: 46-51. Microsatellites have been widely accepted and employed as useful molecular markers for measuring genetic diversity and divergence within and among populations. The various parameters developed so far to measure genetic diversity within and among populations are observed and expected heterozygosities (Ho and He), the mean number of alleles per locus (MNA),polymorphic information content (PIC), genetic distance and phylogenetic or tree building approach.The objective of thisreview was therefore to quantifythe genetic diversity studies of domestic sheep populations using microsatellite markersand their contribution in supporting sustainable sheep breeding programs. From the review, it is possible to see that there was high within population genetic variations in all the studied sheep populations, poor level of population differentiations and high levels of inbreeding. On the other hand, low estimates of hetrozygosities and mean number of alleles and employing only few and weak markers were observed in some of the studies. The gaps observed in the previous genetic diversity studies of the sheep populations may demand further works to reveal more information on the population structures andto start appropriate and sustainable breeding programs.

scholarly journals Evaluation of Flower, Fruit, and Juice Characteristics of a Multinational Collection of Cider Apple Cultivars Grown in the U.S. Pacific Northwest

2017 ◽  
Vol 27 (3) ◽  
pp. 431-439 ◽  
Author(s):  
Carol A. Miles ◽  
Jacqueline King ◽  
Travis Robert Alexander ◽  
Edward Scheenstra
Keyword(s):  
Pacific Northwest ◽  
Alcoholic Beverage ◽  
Fruit Size ◽  
Titratable Acidity ◽  
The United States ◽  
Research Station ◽  
Apple Cultivars ◽  
The Mean ◽  
Ashton Research Station ◽  
Strongly Consistent

Little information exists on the bloom and fruit characteristics of cider apple (Malus ×domestica) cultivars grown in the United States for the juice and alcoholic beverage markets. In this study, a total of 17 cider apple cultivars, including 4 American, 9 English, and 4 French, plus 1 Danish standard dessert apple cultivar (Red Gravenstein, Worthen strain) commonly used for cider, all grown in northwest Washington, were evaluated from 2000 to 2015 for commercially relevant traits. Trees were rated each year and the cultivars were categorized accordingly by relative bloom time, bloom habit, and productivity. The mean full bloom (FB) date of the 18 apple cultivars evaluated ranged from 25 Apr. to 25 May, with 6 cultivars categorized as early season bloomers, 9 as midseason, and 3 as late season. The mean bloom density (BD) rating (measured on a scale of 1–5) for all cultivars was (mean ± sd) 3.8 ± 0.6 (moderate bloom), with the bloom habit of 1 cultivar categorized as biennial, 11 as consistent, and 6 as strongly consistent. The mean productivity rating (measured on a scale of 1–5) for all cultivars was 2.9 ± 0.6 (light fruiting), with the productivity of 4 cultivars categorized as biennial, 10 as consistent, and 4 as strongly consistent. The mean fruit diameter of the 18 apple cultivars was 2.7 ± 0.4 inches (medium sized), with the fruit size of 2 cultivars categorized as small-fruited, 15 as medium-fruited, and 1 as large-fruited. For the 18 cultivars, the mean tannin and titratable acidity (TA) were 0.20% ± 0.14% and 0.54% ± 0.28%, respectively, and using the English cider apple classification system of juice type, 4 of the cultivars were classified as bittersweet, 1 as bittersharp, 3 as sweet, and 10 as sharp. Three of the cultivars had tannin content lower than what was historically recorded at the Long Ashton Research Station (LARS) in Bristol, England, for those same cultivars. The mean specific gravity (SG) of the 18 cultivars was 1.052 ± 0.007, the average predicted alcohol by volume (ABV) was 6.9% ± 0.9%, and the mean pH was 3.68 ± 0.39. Classification of three cultivars in northwest Washington, based on juice characteristics, differed from their historical classification in England, likely because of differences in climate and management. Only cultivars Golden Russet (sharp), Grimes Golden (sharp), and Yarlington Mill (sweet, but borderline bittersweet) were strongly consistent in productivity, but none produced high levels of tannin, whereas only cultivars Bramtot (bittersweet), Chisel Jersey (bittersweet), and Breakwell Seedling (bittersharp) were consistent in productivity and produced high levels of tannin.

Nutritional composition of Patagonian marine gastropods during reproductive seasonality

2020 ◽  
Vol 100 (4) ◽  
pp. 567-576
Author(s):  
Mariano Cumplido ◽  
Carmen Marinho ◽  
Gregorio Bigatti
Keyword(s):  
Glycogen Content ◽  
Atlantic Coast ◽  
Economic Value ◽  
International Markets ◽  
Nutritional Composition ◽  
Western Atlantic ◽  
Nutritional Values ◽  
Marine Gastropods ◽  
Complementary Resources ◽  
The Mean

AbstractMarine gastropods are consumed worldwide due to their nutritional quality, having important economic value in international markets. In the gulfs of Northern Patagonia (Argentina), marine gastropods are captured as complementary resources during bivalve artisanal fisheries. In this study, we determined the biochemical composition during the reproductive cycle of four edible marine gastropods abundant along the South-western Atlantic coast: Odontocymbiola magellanica, Buccinanops deformis, Buccinanops cochlidium and Trophon geversianus. All the studied species presented high protein (36–70.8%), low lipids (0.02–1.50%) and intermediate glycogen content (3.22–14.08%). The main oviposition season was during spring and summer. The mean nutritional values indicate that the species studied provide a good source of nutrients appropriate to the human diet, reaffirming their value as a commercial resource. Taking into account the nutritional contribution and the reproductive season, the best period for the capture of these resources is during summer for O. magellanica and T. geversianus, and during autumn for B. deformis and B. cochlidium. This work will help promote the consumption of Patagonian gastropods while ensuring their responsible capture, contributing to the sustainability of these valuable resources.

scholarly journals Genetic diversity of cultivated and wild-type peanuts evaluated with M13-tailed SSR markers and sequencing

2007 ◽  
Vol 89 (2) ◽  
pp. 93-106 ◽  
Author(s):  
NOELLE A. BARKLEY ◽  
ROB E. DEAN ◽  
ROY N. PITTMAN ◽  
MING L. WANG ◽  
CORLEY C. HOLBROOK ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Ssr Markers ◽  
Polymorphic Information Content ◽  
Data Set ◽  
Mini Core Collection ◽  
Genomic Ssr ◽  
Cultivated Peanut ◽  
The Mean ◽  
Wild Accessions ◽  
Almost All

SummaryThirty-one genomic SSR markers with a M13 tail attached were used to assess the genetic diversity of the peanut mini core collection. The M13-tailed method was effective in discriminating almost all the cultivated and wild accessions. A total of 477 alleles were detected with an average of 15·4 alleles per locus. The mean polymorphic information content (PIC) score was 0·687. The cultivated peanut (Arachis hypogaea L.) mini core produced a total of 312 alleles with an average of 10·1 alleles per locus. A neighbour-joining tree was constructed to determine the interspecific and intraspecific relationships in this data set. Almost all the peanut accessions in this data set classified into subspecies and botanical varieties such as subsp. hypogaea var. hypogaea, subsp. fastigiata var. fastigiata, and subsp. fastigiata var. vulgaris clustered with other accessions with the same classification, which lends further support to their current taxonomy. Alleles were sequenced from one of the SSR markers used in this study, which demonstrated that the repeat motif is conserved when transferring the marker across species borders. This study allowed the examination of the diversity and phylogenetic relationships in the peanut mini core which has not been previously reported.

scholarly journals Impact on Health-Related Quality of Life and Costs of Managing Chronic Neuropathic Pain in Academic Pain Centres: Results from a One-Year Prospective Observational Canadian Study

2015 ◽  
Vol 20 (6) ◽  
pp. 327-333 ◽  
Author(s):  
J-E Tarride ◽  
DE Moulin ◽  
M Lynch ◽  
AJ Clark ◽  
L. Stitt ◽  
...  
Keyword(s):  
Quality Of Life ◽  
Economic Value ◽  
Health Related Quality ◽  
Policy Makers ◽  
Related Quality ◽  
Health Related ◽  
The Mean ◽  
One Year ◽  
Over Time

BACKGROUND: The management of chronic pain, including neuropathic pain (NeP), is a major public health issue. However, there is a paucity of data evaluating pain management strategies in real-life settings.OBJECTIVE: To inform policy makers about the economic value of managing chronic NeP in academic centres by conducting a subeconomic assessment of a Canadian multicentre cohort study aimed at determining the long-term outcomes of the management of chronic NeP in academic pain centres. Specific questions regarding the economic value of this type of program were answered by a subset of patients to provide further information to policy makers.METHODS: Baseline demographic information and several pain-related measurements were collected at baseline, three, six and 12 months in the main study. A resource use questionnaire aimed at determining NeP-related costs and the EuroQoL-5 Dimension were collected in the subset study from consenting patients. Statistical analyses were conducted to compare outcomes over time and according to responder status.RESULTS: A total of 298 patients were evaluated in the present economic evaluation. The mean (± SD) age of the participants was 53.7±14.0 years, and 56% were female. At intake, the mean duration of NeP was >5 years. Statistically significant improvements in all pain and health-related quality of life outcomes were observed between the baseline and one-year visits. Use decreased over time for many health care resources (eg, visits to the emergency room decreased by one-half), which resulted in overall cost savings.CONCLUSION: The results suggest that increased access to academic pain centres should be facilitated in Canada.

scholarly journals Application of the ISSR method to estimate the genetic similarity of Dasypyrum villosum (L.) P. Candargy Greek populations to Triticum and Secale species

2011 ◽  
Vol 21 (1) ◽  
pp. 7-12
Author(s):  
Agnieszka Grądzielewska
Keyword(s):  
Information Content ◽  
Genetic Similarity ◽  
Polymorphic Information Content ◽  
Similarity Index ◽  
Issr Markers ◽  
Mean Value ◽  
Dasypyrum Villosum ◽  
Reproducible Method ◽  
The Mean ◽  
High Diversity

Application of the ISSR method to estimate the genetic similarity of Dasypyrum villosum (L.) P. Candargy Greek populations to Triticum and Secale species In the study, the genetic similarity between Dasypyrum villosum L. (P.) Candargy and Triticum L. and Secale L. species was studied on the basis of ISSR markers. As a very polymorphic, effective and reproducible method, ISSR can be successfully employed to evaluate polymorphism between and inside different species. The polymorphic information content values (PIC) of ISSR method ranged from 0.57 to 0.87, with the mean value of 0.7. The genetic similarity of the forms analyzed ranged from 0.27 to 0.97, with the mean value of 0.47, indicating their high diversity. A higher similarity of Dasypyrum villosum to Triticum species, in comparison with Secale was found - the mean Dice genetic similarity index between genera was calculated at 0.40 for Dasypyrum and Triticum, and at 0.31 for Dasypyrum and Secale.

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