scholarly journals Micractinium tetrahymenae (Trebouxiophyceae, Chlorophyta), a New Endosymbiont Isolated from Ciliates

Diversity ◽  
2020 ◽  
Vol 12 (5) ◽  
pp. 200 ◽  
Author(s):  
Thomas Pröschold ◽  
Gianna Pitsch ◽  
Tatyana Darienko
Keyword(s):  
New Species ◽  
Green Algae ◽  
Aquatic Plant ◽  
Phylogenetic Analyses ◽  
Integrative Approach ◽  
Algal Strain ◽  
Anoxic Environments ◽  
Phylogenetic Lineages ◽  
A New Species ◽  
Mixotrophic Ciliates

Endosymbiosis between coccoid green algae and ciliates are widely distributed and occur in various phylogenetic lineages among the Ciliophora. Most mixotrophic ciliates live in symbiosis with different species and genera of the so-called Chlorella clade (Trebouxiophyceae). The mixotrophic ciliates can be differentiated into two groups: (i) obligate, which always live in symbiosis with such green algae and are rarely algae-free and (ii) facultative, which formed under certain circumstances such as in anoxic environments an association with algae. A case of the facultative endosymbiosis is found in the recently described species of Tetrahymena, T. utriculariae, which lives in the bladder traps of the carnivorous aquatic plant Utricularia reflexa. The green endosymbiont of this ciliate belonged to the genus Micractinium. We characterized the isolated algal strain using an integrative approach and compared it to all described species of this genus. The phylogenetic analyses using complex evolutionary secondary structure-based models revealed that this endosymbiont represents a new species of Micractinium, M. tetrahymenae sp. nov., which was further confirmed by the ITS2/CBC approach.

scholarly journals Caliciopsis moriondi, a new species for a fungus long confused with the pine pathogen C. pinea

MycoKeys ◽  
2020 ◽  
Vol 73 ◽  
pp. 87-108
Author(s):  
Duccio Migliorini ◽  
Nicola Luchi ◽  
Alessia Lucia Pepori ◽  
Francesco Pecori ◽  
Chiara Aglietti ◽  
...  
Keyword(s):  
New Species ◽  
North America ◽  
Pinus Radiata ◽  
Phylogenetic Analyses ◽  
Distinct Species ◽  
Integrative Approach ◽  
Eastern North America ◽  
Pathogenic Species ◽  
Eastern Usa ◽  
A New Species

The genus Caliciopsis (Eurotiomycetes, Coryneliales) includes saprobic and plant pathogenic species. Caliciopsis canker is caused by Caliciopsis pinea Peck, a species first reported in the 19th century in North America. In recent years, increasing numbers of outbreaks of Caliciopsis canker have been reported on different Pinus spp. in the eastern USA. In Europe, the disease has only occasionally been reported causing cankers, mostly on Pinus radiata in stressed plantations. The aim of this study was to clarify the taxonomy of Caliciopsis specimens collected from infected Pinus spp. in Europe and North America using an integrative approach, combining morphology and phylogenetic analyses of three loci. The pathogenicity of the fungus was also considered. Two distinct groups were evident, based on morphology and multilocus phylogenetic analyses. These represent the known pathogen Caliciopsis pinea that occurs in North America and a morphologically similar, but phylogenetically distinct, species described here as Caliciopsis moriondisp. nov., found in Europe and at least one location in eastern North America. Caliciopsis moriondi differs from C. pinea in various morphological features including the length of the ascomata, as well as their distribution on the stromata.

scholarly journals Confusion surrounding Didymosphaeria—phylogenetic and morphological evidence suggest Didymosphaeriaceae is not a distinct family

Phytotaxa ◽  
2014 ◽  
Vol 176 (1) ◽  
pp. 102 ◽  
Author(s):  
HIRAN A. ARIYAWANSA ◽  
ERIO CAMPORESI ◽  
KASUN M. THAMBUGALA ◽  
AUSANA MAPOOK ◽  
JI-CHUAN KANG ◽  
...  
Keyword(s):  
New Species ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Morphological Characters ◽  
Morphological Evidence ◽  
Nucleotide Sequence Data ◽  
The Family ◽  
Family Based ◽  
Phylogenetic Lineages ◽  
A New Species

Didymosphaeriaceae is a ubiquitous fungal family that is reported to include saprobic, endophytic and pathogenic species associated with a wide variety of substrates. The family is characterized by 1-septate ascospores and trabeculate pseudoparaphyses, mainly anastomosing above the asci. In recent treatments Appendispora, Didymosphaeria, Roussoella, Phaeodothis and Verruculina were placed in the family. The aim of the present study is to delineate phylogenetic lineages within Didymosphaeriaceae and allied genera. A new species, Didymosphaeria rubi-ulmifolii, was isolated and identified based on morphological characters and phylogenetic analyses of partial 18S nrDNA and 28S nrDNA nucleotide sequence data. Didymosphaeria rubi-ulmifolii clustered with Montagnulaceae as a separate genus, while two putative strains (HKUCC 5834 and CMW 22186) of D. futilis from GenBank clustered with Cucurbitariaceae and Didymellaceae, respectively. The new species is characterized by immersed to slightly erumpent ascomata immersed under a clypeus, a peridium with compressed cells of textura intricata, long trabeculate pseudoparaphyses, anastomosing mostly above the asci and brown, 1-septate ascospores with granulate ornamentation. Phylogenetic analysis in combination with morphology and a review of literature show that Appendispora, Phaeodothis, Roussoella and Verruculina should be excluded from the family. Phaeodothis belongs in Montagnulaceae, Verruculina in Testudinaceae, while Appendispora and Roussoella belong in Roussoellaceae. The position of Didymosphaeriaceae as a distinct family, based on 1-septate ascospores and trabeculate pseudoparaphyses, mainly anastomosing above the asci is doubtful. Fresh collections of more Didymosphaeria strains are needed for epitypification and to obtain sequence data to establish if this family can be maintained.

scholarly journals Zebrus pallaoroi sp. nov.: a new species of goby (Actinopterygii: Gobiidae) from the Mediterranean Sea with a dna-based phylogenetic analysis of the Gobius-lineage

2021 ◽  
pp. 1-33
Author(s):  
Marcelo Kovačić ◽  
Radek Šanda ◽  
Katarína Čekovská ◽  
Tereza Soukupová ◽  
Jasna Vukić
Keyword(s):  
New Species ◽  
Mediterranean Sea ◽  
Phylogenetic Relationships ◽  
Phylogenetic Analyses ◽  
The Body ◽  
Integrative Approach ◽  
Fish Family ◽  
Posterior Nostril ◽  
The Mediterranean ◽  
A New Species

Abstract The gobies (Gobiidae) are the most diverse fish family in the Mediterranean Sea. Nevertheless, knowledge on their diversity, taxonomy, and phylogenetic relationships is still inadequate. The phylogenetic analyses reveal two genetically highly distinct clades among specimens identified as Zebrus zebrus. A new species, Zebrus pallaoroi sp. nov., is described based on an integrative approach. The neotype of Zebrus zebrus is designated. Genetic data confirm a pronounced level of divergence between Z. pallaoroi and Z. zebrus, with the mean genetic distance on cytochrome b being 18.1% and 1.07% on rhodopsin. Phylogenetic relationships within the Gobius-lineage were estimated on both markers. Morphologically, Z. pallaoroi is distinguished from the only congener Z. zebrus by having a snout longer than its eye, posterior nostril about 4/5–9/10 of the anterior nostril, eye diameter 4.3−4.7 in head length, ventrolateral head ridges transversally connected on the anterior side by a short transversal ridge, anterior membrane midline depth about 2/3 of the spinous ray, head canal pore α diameter about half of the distance between pore ρ and ρ1, suborbital sensory papillae row 5i going downwards to or near the level of row d, the distance between row 5i and row d absent or much smaller than the length of row 5i, and the body with ten to eleven vertical dark brown bands. Zebrus pallaoroi was recorded from the southern Adriatic, northern Ionian, and northern and western Aegean Seas, and is a cryptobenthic fish from very shallow waters.

Ditylenchus laurae sp. n. (Tylenchida: Anguinidae) from Poland – a new species of the D. dipsaci complex associated with a water plant, Potamogeton perfoliatus L.

Nematology ◽  
2017 ◽  
Vol 19 (2) ◽  
pp. 197-209 ◽  
Author(s):  
Andrzej Tomasz Skwiercz ◽  
Franciszek Wojciech Kornobis ◽  
Grażyna Winiszewska ◽  
Arnika Przybylska ◽  
Aleksandra Obrępalska-Stęplowska ◽  
...  
Keyword(s):  
New Species ◽  
Aquatic Plant ◽  
Phylogenetic Analyses ◽  
Tail Length ◽  
Gene Sequences ◽  
Water Plant ◽  
Potamogeton Perfoliatus ◽  
Basal Bulb ◽  
Stylet Length ◽  
A New Species

The genus Ditylenchus consists of more than 60 species, some of which are plant parasites. In this paper we report on Ditylenchus laurae sp. n. from Poland, a new species associated with the aquatic plant, Potamogeton perfoliatus L. Ditylenchus laurae sp. n. is characterised by a long and slender body with L = 1881 (1523-2095) μm and 1875 (1690-2089) μm, a = 88.8 (72.5-102.5) and 89.7 (71.9-97.9), stylet length = 10.8 (9.6-12.1) μm and 8.3 (7.7-9.0) μm, tail length = 117.2 (103.5-126.7) μm and 102.4 (98.3-113.6) μm in females and males, respectively; four incisures, rounded stylet knobs, long basal bulb (about ten times as long as wide), post-vulval uterine sac from 4.3-5.6 vulval body diam. long, and mucronate tail. Characterisation using the ITS rRNA, COI and hsp90 gene sequences was conducted and a phylogenetic analyses revealed that D. laurae sp. n. belongs to the D. dipsaci complex.

A new species of Brevipalpus (Acari: Tenuipalpidae) from the Azores Islands, with remarks on the B. cuneatus species group

2019 ◽  
Vol 24 (11) ◽  
pp. 2184-2208
Author(s):  
Jorge Laerson Dos Santos Alves ◽  
Francisco Ferragut ◽  
Renata Santos Mendonça ◽  
Aline Daniele Tassi ◽  
Denise Navia
Keyword(s):  
New Species ◽  
Dna Sequences ◽  
Nuclear Dna ◽  
Phylogenetic Analyses ◽  
Species Group ◽  
Wild Plants ◽  
Integrative Approach ◽  
Electron And Light Microscopy ◽  
Definition Of ◽  
A New Species

Brevipalpus contains about 290 species, some of which are considered of economic importance. In spite of their agricultural importance, the species diversity is scarcely known in several regions around the world, notably on wild plants. In this work a new species collected on an endemic ivy of the Azores Archipelago, Hedera azorica Carrière (Araliaceae), is described based on an integrative approach using morphological traits of the adults, obtained through electron and light microscopy, and molecular characters based on mitochondrial and nuclear DNA sequences. Phylogenetic analyses were conducted in order to produce reliable phylogenetic placement of the new species, which is tentatively classified in the B. portalis species group. Morphological similarities between the new species and B. cuneatus Canestrini and Fanzago point out to some inconsistencies in the current morphological classification of Brevipalpus species, especially in the definition of the B. cuneatus group, herein discussed.

scholarly journals Description of a new species of Aplectana (Nematoda: Ascaridomorpha: Cosmocercidae) using an integrative approach and preliminary phylogenetic study of Cosmocercidae and related taxa

2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Hui-Xia Chen ◽  
Xiao-Hong Gu ◽  
Xue-Feng Ni ◽  
Liang Li
Keyword(s):  
New Species ◽  
Ribosomal Dna ◽  
Phylogenetic Relationships ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Systematic Position ◽  
Integrative Approach ◽  
Phylogenetic Study ◽  
The Family ◽  
A New Species

Abstract Background Nematodes of the family Cosmocercidae (Ascaridomorpha: Cosmocercoidea) are mainly parasitic in the digestive tract of various amphibians and reptiles worldwide. However, our knowledge of the molecular phylogeny of the Cosmocercidae is still far from comprehensive. The phylogenetic relationships between Cosmocercidae and the other two families, Atractidae and Kathlaniidae, in the superfamily Cosmocercoidea are still under debate. Moreover, the systematic position of some genera within Cosmocercidae remains unclear. Methods Nematodes collected from Polypedates megacephalus (Hallowell) (Anura: Rhacophoridae) were identified using morphological (light and scanning electron microscopy) and molecular methods [sequencing the small ribosomal DNA (18S), internal transcribed spacer 1 (ITS-1), large ribosomal DNA (28S) and mitochondrial cytochrome c oxidase subunit 1 (cox1) target regions]. Phylogenetic analyses of cosmocercoid nematodes using 18S + 28S sequence data were performed to clarify the phylogenetic relationships of the Cosmocercidae, Atractidae and Kathlaniidae in the Cosmocercoidea and the systematic position of the genus Aplectana in Cosmocercidae. Results Morphological and genetic evidence supported the hypothesis that the nematode specimens collected from P. megacephalus represent a new species of Aplectana (Cosmocercoidea: Cosmocercidae). Our phylogenetic results revealed that the Cosmocercidae is a monophyletic group, but not the basal group in Cosmocercoidea as in the traditional classification. The Kathlaniidae is a paraphyletic group because the subfamily Cruziinae within Kathlaniidae (including only the genus Cruzia) formed a seperate lineage. Phylogenetic analyses also showed that the genus Aplectana has a closer relationship to the genus Cosmocerca in Cosmocercidae. Conclusions Our phylogenetic results suggested that the subfamily Cruziinae should be moved from the hitherto-defined family Kathlaniidae and elevated as a separate family, and the genus Cosmocerca is closely related to the genus Aplectana in the family Cosmocercidae. The present study provided a basic molecular phylogenetic framework for the superfamily Cosmocercoidea based on 18S + 28S sequence data for the first time to our knowledge. Moreover, a new species, A. xishuangbannaensis n. sp., was described using integrative approach. Graphical abstract

A preliminary review of Nephelomys albigularis (Tomes, 1860) (Rodentia: Cricetidae), with the description of a new species from the Peruvian montane forests

Zootaxa ◽  
2021 ◽  
Vol 5027 (2) ◽  
pp. 175-210
Author(s):  
DENNISSE RUELAS ◽  
VÍCTOR PACHECO ◽  
BETSY INCHE ◽  
NICOLAS TINOCO
Keyword(s):  
New Species ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
External Auditory Meatus ◽  
Integrative Approach ◽  
Preliminary Review ◽  
Montane Forests ◽  
Southern Ecuador ◽  
A New Species

Nephelomys albigularis is a sigmodontine rodent of the tribe Oryzomyini distributed in the Andean forests from central Ecuador to central Peru. Although several studies recognize this species as monotypic, significant morphological variation has been reported in Peruvian populations that were not properly assessed by direct comparisons with the type series from central Ecuador. We present a preliminary review of N. albigularis with an integrative approach and emphasis on Peruvian populations. We analyzed specimens using morphological and morphometric methods, complemented with phylogenetic analyses and species delimitation using sequence data from the cytochrome-b gene. Our results reveal that N. albigularis (sensu lato) comprises two taxa: N. albigularis s.s., from the montane forests in central and southern Ecuador and northwestern Peru, and Nephelomys sp. nov. from montane forest east of the Marañón River. These taxa are morphologically distinct and are separated by a genetic distance of 5.90 ± 1.01%. Nephelomys sp. nov. differs from N. albigularis s.s. by longer rump hairs, narrow hypothenar pads, faintly bicolor tail; absent interorbital ridges, low zygomatic plates, smoothly squared posterior margin of the hard palate or with a small median postpalatal process, smoothly edged ventral margin of the external auditory meatus, and slightly angular mandibular sigmoid notches. In this work, we present a diagnosis and description of the new species of Nephelomys and discuss the role of the Marañón River as a potential driver for speciation in the genus Nephelomys.  

scholarly journals Molecular phylogeny of the family Cosmocercidae (Nematoda: Ascaridida), with description of a new species of Aplectana using an integrative approach

2021 ◽  
Author(s):  
Hui-Xia Chen ◽  
Xiao-Hong Gu ◽  
Xue-Feng Ni ◽  
Liang Li
Keyword(s):  
New Species ◽  
Molecular Phylogeny ◽  
Ribosomal Dna ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Systematic Position ◽  
Integrative Approach ◽  
The Family ◽  
Molecular Phylogenetic ◽  
A New Species

Abstract Background Nematodes of the family Cosmocercidae (Ascaridida: Cosmocercoidea) are mainly parasitic in the digest tract of various amphibians and reptiles worldwide. However, our knowledge of the molecular phylogeny of the Cosmocercidae is still far from comprehensive. The phylogenetic relationships of the Cosmocercidae and the other two families Atractidae and Kathlaniidae in the superfamily Cosmocercoidea, are still under debate. Moreover, the systematic position of some genera in Cosmocercidae remains unclear. Methods Nematodes collected from Polypedates megacephalus (Hallowell) (Anura: Rhacophoridae) were identified using morphological methods (light and scanning electron microscopy) and molecular approaches [sequencing and analyzing the small ribosomal DNA (18S), internal transcribed spacer 1 (ITS-1), large ribosomal DNA (28S) and mitochondrial cytochrome c oxidase subunit 1 (cox1) target regions]. Phylogenetic analyses of cosmocercoid nematodes using 18S + 28S sequence data were performed to clarify the phylogenetic relationships of the Cosmocercidae, Atractidae and Kathlaniidae in the Cosmocercoidea, and the systematic position of the genus Aplectana in Cosmocercidae. Results Morphological and genetic evidence supported that the nematode specimens collected from P. megacephalus represents a new species of Aplectana (Cosmocercoidea: Cosmocercidae). Our phylogenetic results revealed that the Cosmocercidae is a monophyletic group, but not the basal group in Cosmocercoidea as the traditional classification. The Kathlaniidae is a paraphyletic group, and the subfamily Cruziinae (including only the genus Cruzia) formed a sister relationship to the Cosmocercidae. Phylogenetic analyses also showed that the genus Aplectana has closer relationship to the genus Cosmocerca in the Cosmocercidae. Conclusions Our molecular phylogenetic results supported that the subfamily Cruziinae should be moved out from the hitherto-defined family Kathlaniidae and elevated to a separate family, and the genus Cosmocerca has closer relationship to the genus Aplectana in the family Cosmocercidae, Our present study provided the basic molecular phylogenetic framework for the superfamily Cosmocercoidea based on 18S + 28S sequence data for the first time. Moreover, a new species of Aplectana, A. xishuangbannaensis n. sp., was described using an integrative approach.

Steinernema borjomiense n. sp. (Rhabditida: Steinernematidae), a new entomopathogenic nematode from Georgia

Nematology ◽  
2018 ◽  
Vol 20 (7) ◽  
pp. 653-669 ◽  
Author(s):  
Oleg Gorgadze ◽  
Elena Fanelli ◽  
Manana Lortkhipanidze ◽  
Alberto Troccoli ◽  
Medea Burjanadze ◽  
...  
Keyword(s):  
New Species ◽  
18S Rrna ◽  
Entomopathogenic Nematode ◽  
Phylogenetic Analyses ◽  
Tail Length ◽  
Morphological Characters ◽  
18S Rrna Gene ◽  
The Body ◽  
Rrna Gene ◽  
A New Species

Summary A new species of entomopathogenic nematode, Steinernema borjomiense n. sp., was isolated from the body of the host insect, Oryctes nasicornis (Coleoptera: Scarabaeidae), in Georgia, in the territory of Borjomi-Kharagauli. Morphological characters indicate that the new species is closely related to species of the feltiae-group. The infective juveniles are characterised by the following morphological characters: body length of 879 (777-989) μm, distance between the head and excretory pore = 72 (62-80) μm, pharynx length = 132 (122-142) μm, tail length = 70 (60-80) μm, ratio a = 26.3 (23.0-29.3), H% = 45 (40-51), D% = 54 (47-59), E% = 102 (95-115), and lateral fields consisting of seven ridges (eight incisures) at mid-body. Steinernema borjomiense n. sp. was molecularly characterised by sequencing three ribosomal regions (the ITS, the D2-D3 expansion domains and the 18S rRNA gene) and the mitochondrial COI gene. Phylogenetic analyses revealed that S. borjomiense n. sp. differs from all other known species of Steinernema and is a member of the monticolum-group.

A new species of Cyrtodactylus (Squamata: Gekkonidae) from Ninh Thuan Province, southern Vietnam

Zootaxa ◽  
2021 ◽  
Vol 4999 (1) ◽  
pp. 58-76
Author(s):  
Quyen Hanh Do ◽  
TRUNG MY PHUNG ◽  
HANH THI NGO ◽  
MINH DUC LE ◽  
THOMAS ZIEGLER ◽  
...  
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Coi Gene ◽  
Unique Combination ◽  
Mitochondrial Coi ◽  
Southern Vietnam ◽  
Mitochondrial Coi Gene ◽  
Morphological Differences ◽  
Dorsal Pattern ◽  
A New Species

A new species of the Cyrtodactylus irregularis group is described from Ninh Thuan Province, southern Vietnam based on molecular divergence and morphological differences. Cyrtodactylus orlovi sp. nov. is distinguished from the remaining Indochinese bent-toed geckos by having the unique combination of the following characters: size medium (SVL 61.0–77.7 mm); dorsal tubercles in 16–20 irregular rows; 36–39 ventral scale rows; precloacal pores absent in females, 5 or 6 in males, in a continuous row; femoral pores absent; 3–8 enlarged femoral scales; postcloacal spurs 1 or 2; lamellae under toe IV 16–19; a continuous neckband; a highly irregular transverse banded dorsal pattern; the absence of transversely enlarged median subcaudal scales. In phylogenetic analyses, the new species was revealed to be the sister taxon to a clade consisting of Cyrtodactylus cattienensis and the most recently described species from Vietnam, C. chungi, with 12.1–12.4% and 11.7 % pairwise genetic divergence from the two species, respectively, based on a fragment of the mitochondrial COI gene.  

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