scholarly journals New Rod-Like H-Bonded Assembly Systems: Mesomorphic and Geometrical Aspects

Crystals ◽  
2020 ◽  
Vol 10 (9) ◽  
pp. 795
Author(s):  
Laila A. Al-Mutabagani ◽  
Latifah Abdullah Alshabanah ◽  
Hoda A. Ahmed ◽  
Khulood A. Abu Al-Ola ◽  
Mohamed Hagar
Keyword(s):  
Density Functional ◽  
Polarized Light ◽  
Proton Donor ◽  
Proton Acceptor ◽  
Scanning Calorimetry ◽  
Functional Theory ◽  
Ft Ir ◽  
Ir Spectroscopic ◽  
Thermal Stability Of ◽  
Bonded Complexes

Experimental and geometrical approaches of new systems of mesomorphic 1:1 supramolecular H-bonded complexes (SMHBCs) of five rings are discussed. The H-bonding between 4-alkoxyphenylimino benzoic acids (An, as proton acceptor) and 4-(4′–pyridylazophenyl) 4′′-alkoxybenzoates (Bm, as proton donor) were investigated. Mesomorphic behaviors were analyzed by differential scanning calorimetry (DSC) and mesophase textures were identified by polarized light microscopy (POM). H-bonded assembly was established by FT-IR spectroscopic measurements via Fermi band discussion. Thermal and theoretical factors were predicted for all synthesized complexes by density functional theory (DFT) predictions. The results revealed that all prepared complexes were monomorphic, with a broad range of smectic A phases with a high thermal stability of enantiotropic mesophase. Furthermore, DFT stimulations illustrated the experimental results in terms of the influence of the chain length either of the acid or the base component. Many parameters, such as the calculated stability, the dipole moment and the polarizability of the H-bonded complexes, illustrate how these parameters work together to enhance the smectic mesophases with the obtained stability and range.

scholarly journals New Symmetrical U- and Wavy-Shaped Supramolecular H-Bonded Systems; Geometrical and Mesomorphic Approaches

Molecules ◽  
2020 ◽  
Vol 25 (6) ◽  
pp. 1420 ◽  
Author(s):  
Laila A. Al-Mutabagani ◽  
Latifah Abdullah Alshabanah ◽  
Hoda A. Ahmed ◽  
Mohamed Hagar ◽  
Khulood A. Abu Al-Ola
Keyword(s):  
Density Functional ◽  
Geometrical Parameters ◽  
Scanning Calorimetry ◽  
Geometrical Structures ◽  
Functional Theory ◽  
Smectic C ◽  
The Density Functional Theory ◽  
Phenyl Rings ◽  
Ft Ir ◽  
Bonded Complexes

New mesomorphic symmetrical 2:1 supramolecular H-bonded complexes of seven phenyl rings were prepared between 4-n-alkoxyphenylazobenzoic acids and 4-(2-(pyridin-3-yl)diazenyl)phenyl nicotinate. Mesomorphic studies of the prepared complexes were investigated using differential scanning calorimetry (DSC) and polarizing optical microscopy (POM). Fermi bands of the formed H-bonded interactions were confirmed by FT-IR spectroscopy. Geometrical parameters for all complexes were performed using the density functional theory (DFT) calculations method. Theoretical results revealed that the prepared H-bonded complexes are in non-linear geometry with U-shaped and wavy-shaped geometrical structures; however, the greater linearity of the wavy-shaped compounds could be the reason for their stability with respect to the U-shaped conformer. Moreover, the stable, wavy shape of supramolecular H-bonded complexes (SMHBCs) has been used to illustrate mesomeric behavior in terms of the molecular interaction. The experimental mesomorphic investigations revealed that all complexes possess enantiotropic smectic C phase. Phases were confirmed by miscibility with a standard smectic C (SmC) compound. A comparison was constructed to investigate the effect of incorporating azophenyl moiety into the mesomeric behavior of the corresponding five-membered complexes. It was found that the addition of the extra phenylazo group to the acid moiety has a great increment of the mesophase stability (TC) values with respect to the monotropic SmC phase of the five aromatic systems to the high stable enantiotropic SmC mesophase.

Mechanistic Insights into Protonated Diamines-catalyzed Decarboxylation of Oxaloacetate

2019 ◽  
Vol 16 (3) ◽  
pp. 202-208
Author(s):  
Chuangang Fan ◽  
Mingzhi Song
Keyword(s):  
Free Energy ◽  
Gibbs Free Energy ◽  
Density Functional ◽  
Catalytic Mechanism ◽  
Proton Donor ◽  
Proton Acceptor ◽  
Free Energy Barrier ◽  
Functional Theory ◽  
Chemical Mechanisms ◽  
Insight Into

The chemical mechanisms of protonated diamines-catalyzed decarboxylation of oxaloacetic acid anions in water solutions have been studied by using density functional theory. The calculated results show that the activated Gibbs free energy of the decarboxylation step is the highest in the whole diamine-catalytic processes for OA2-, and protonated ethylenediamine (ENH+) is the best catalyst of the five diamines, which is consistent with the study of Thalji et al. However, for OA-, different with OA2-, the dehydration step is the rate-determining one except 1,3-diaminopropane, and protonated 1,4- diaminobutane is the best catalyst of the five catalysts. The results also indicate that the second amino group participates in the reaction as the proton acceptor or proton donor, and it assists in decarboxylation by hydrogen bonds, decreasing the active Gibbs free energy barrier of the whole catalytic process. These results provide insight into the precise catalytic mechanism of several enzymes whose reactions are known to proceed via an imine intermediate.

scholarly journals Chair- and V-Shaped of H-bonded Supramolecular Complexes of Azophenyl Nicotinate Derivatives; Mesomorphic and DFT Molecular Geometry Aspects

Molecules ◽  
2020 ◽  
Vol 25 (7) ◽  
pp. 1510 ◽  
Author(s):  
Omaima A. Alhaddad ◽  
Khulood A. Abu Al-Ola ◽  
Mohamed Hagar ◽  
Hoda A. Ahmed
Keyword(s):  
Hydrogen Bonding ◽  
Density Functional ◽  
Liquid Crystalline ◽  
Molecular Geometry ◽  
Supramolecular Complexes ◽  
Scanning Calorimetry ◽  
Geometrical Structures ◽  
Functional Theory ◽  
Ft Ir ◽  
Nematic Phases

New geometrical architectures of chair- and V-shaped supramolecular liquid crystalline complexes were molded through 1:1 intermolecular hydrogen bonding interactions between 4-(4-(hexyloxy)phenylazo)methyl)phenyl nicotinate and 4-alkoxybenzoic acids. The length of terminal alkoxy acid chains varied, n = 6 to 16 carbons. The mesomorphic behaviour of these complexes was examined through differential scanning calorimetry (DSC) and polarizing optical microscopy (POM). Fourier-transform infrared spectroscopy (FT-IR) was carried out to confirm the presence of Fermi bands that appeared for the hydrogen bonding formation. Enantiotropic nematic phases were observed and covered all lengths of alkoxy chains. The geometrical structures of the prepared supramolecular complexes geometries were estimated by Density functional theory (DFT) calculations. The supramolecular complexes I/An are projected to exhibit a nonlinear geometry with V-shaped and chair-shaped geometry. The chair-shaped conformers of I/An were found to be more stable than V-shaped isomeric complexes. Moreover, the effect of the change of the mesogenic core on the mesophase thermal stability (TC) has been investigated by a comparative study of the present azo supramolecular H-bonding LCs (SMHBCs) I/An and our previously reported their Schiff base analogue complexes, II/An. The findings of the DFT illustrated the high impact of CH=N as a mesogenic core on the mesomorphic behavior in terms of the competitive lateral and terminal intermolecular interactions as well as the molecular electrostatic potential (MEP).

scholarly journals Crystalline Peroxosolvates: Nature of the Coformer, Hydrogen-Bonded Networks and Clusters, Intermolecular Interactions

Molecules ◽  
2020 ◽  
Vol 26 (1) ◽  
pp. 26
Author(s):  
Alexander G. Medvedev ◽  
Andrei V. Churakov ◽  
Petr V. Prikhodchenko ◽  
Ovadia Lev ◽  
Mikhail V. Vener
Keyword(s):  
Density Functional ◽  
High Energy ◽  
Proton Donor ◽  
Proton Acceptor ◽  
Functional Theory ◽  
Sodium Percarbonate ◽  
Analgesic Effects ◽  
1D Chain ◽  
The Stability ◽  
Insight Into

Despite the technological importance of urea perhydrate (percarbamide) and sodium percarbonate, and the growing technological attention to solid forms of peroxide, fewer than 45 peroxosolvates were known by 2000. However, recent advances in X-ray diffractometers more than tripled the number of structurally characterized peroxosolvates over the last 20 years, and even more so, allowed energetic interpretation and gleaning deeper insight into peroxosolvate stability. To date, 134 crystalline peroxosolvates have been structurally resolved providing sufficient insight to justify a first review article on the subject. In the first chapter of the review, a comprehensive analysis of the structural databases is carried out revealing the nature of the co-former in crystalline peroxosolvates. In the majority of cases, the coformers can be classified into three groups: (1) salts of inorganic and carboxylic acids; (2) amino acids, peptides, and related zwitterions; and (3) molecular compounds with a lone electron pair on nitrogen and/or oxygen atoms. The second chapter of the review is devoted to H-bonding in peroxosolvates. The database search and energy statistics revealed the importance of intermolecular hydrogen bonds (H-bonds) which play a structure-directing role in the considered crystals. H2O2 always forms two H-bonds as a proton donor, the energy of which is higher than the energy of analogous H-bonds existing in isostructural crystalline hydrates. This phenomenon is due to the higher acidity of H2O2 compared to water and the conformational mobility of H2O2. The dihedral angle H-O-O-H varies from 20 to 180° in crystalline peroxosolvates. As a result, infinite H-bonded 1D chain clusters are formed, consisting of H2O2 molecules, H2O2 and water molecules, and H2O2 and halogen anions. H2O2 can form up to four H-bonds as a proton acceptor. The third chapter of the review is devoted to energetic computations and in particular density functional theory with periodic boundary conditions. The approaches are considered in detail, allowing one to obtain the H-bond energies in crystals. DFT computations provide deeper insight into the stability of peroxosolvates and explain why percarbamide and sodium percarbonate are stable to H2O2/H2O isomorphic transformations. The review ends with a description of the main modern trends in the synthesis of crystalline peroxosolvates, in particular, the production of peroxosolvates of high-energy compounds and mixed pharmaceutical forms with antiseptic and analgesic effects.

scholarly journals New nematogenic conical-shaped supramolecular H-bonded complexes for solar energy investigations

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Sobhi M. Gomha ◽  
Hoda A. Ahmed ◽  
Mohamed Shaban ◽  
Tariq Z. Abolibda ◽  
Khalid Abdulaziz Alharbi ◽  
...  
Keyword(s):  
Solar Energy ◽  
Density Functional ◽  
Geometrical Structure ◽  
Energy Gap ◽  
Supramolecular Complexes ◽  
Geometrical Parameters ◽  
Scanning Calorimetry ◽  
Functional Theory ◽  
Ft Ir ◽  
Flexible Core

AbstractNew conical-shaped geometrical supramolecular H-bonded liquid crystal complexes were formed through 1:2 intermolecular interactions of H-bonding between flexible core (adipic acid, A) and lateral chloro-substituted azopyridines (Bn). The chains of the terminally alkoxy substituted base (n) were changed between 8 and 16 carbons. Mesomorphic and optical examinations of the prepared complexes were measured via differential scanning calorimetry (DSC) and polarizing optical microscopy (POM). Fourier-transform infrared spectroscopy (FT-IR) was used to confirm the Fermi bands of the H- bonding interactions. Induced nematogenic mesophases that cover the whole lengths of alkoxy-chains were detected. The non-linear geometries of the designed supramolecular complexes were also confirmed via Density functional theory (DFT) calculations. It was found that the length of terminal alkoxy chain of the base moiety highly affects the geometrical structure of the investigated complexes. Moreover, it increases the thermodynamic energy and influences the geometrical parameters. The electrical properties of each of the acid component (A), the base (B16) and their 1:2 complex (A/2B16) were evaluated using the Keithley measurement-source unit. The optical properties studies showed that the influences in the optical absorption and the reduction of the energy gap of the complex compared to its individual components made the resulted supramolecular H-bonded complex soft material suitable for solar energy investigations.

scholarly journals DFT Calculations and Mesophase Study of Coumarin Esters and Its Azoesters

Crystals ◽  
2018 ◽  
Vol 8 (9) ◽  
pp. 359 ◽  
Author(s):  
M. Hagar ◽  
H.A. Ahmed ◽  
O.A. Alhaddadd
Keyword(s):  
Differential Scanning Calorimetry ◽  
Dft Calculations ◽  
Density Functional ◽  
Dipole Moments ◽  
Polarized Light ◽  
Alkoxy Group ◽  
Coumarin Derivatives ◽  
Scanning Calorimetry ◽  
Functional Theory ◽  
Azo Group

Two groups of coumarin derivatives, 4-methyl-2-oxo-2H-chromen-7-yl 4-alkoxybenzoates (coumarin esters), In, and 4-methyl-2-oxo-2H-chromen-7-yl 4-(2-(4-alkoxyphenyl)diazenyl) benzoates (coumarin azoesters), IIn, were synthesized and investigated for their mesophase behavior and stability. Each group constitutes five series that differ from each other by length of the mesogenic part. Within each homologous series, the length of the terminal alkoxy group varies between 6, 8, 10, 12 and 16 carbons. Mesophase behavior was investigated by differential scanning calorimetry (DSC) and identified by polarized light microscopy (PLM). Density functional theory (DFT) calculations for coumarin derivatives were discussed. The results revealed that the incorporation of azo group incorporated in the mesogenic core decreases the energy differences, increases the dipole moments and stabilities of coumarin azoesters series more than coumarin esters.

Spectral Investigation on the Growth and Characterization of NLO Crystals of Thiourea Succinic Acid Single Crystal.

2015 ◽  
Vol 2 (2) ◽  
pp. 70-73
Author(s):  
Kannan.P ◽  
Thambidurai.S ◽  
Suresh.N
Keyword(s):  
Single Crystal ◽  
Succinic Acid ◽  
Slow Evaporation Technique ◽  
Absorption Studies ◽  
Dta Analysis ◽  
Evaporation Technique ◽  
Ft Ir ◽  
Ir Spectroscopic ◽  
Thermal Stability Of

Growth of optically transparent single crystals of thiourea succinic acid (TUSA) was grown successfully from aqueous solution by slow evaporation technique. The crystal structure was elucidated using the single crystal XRD. The various functional groups and the modes of vibrations were identified by FT-IR spectroscopic analysis. The optical absorption studies indicate that the optical transparency window is quite wide making its suitable for NLO applications. Thermal stability of the crown crystal carried out by TGA-DTA analysis.

Synthesis of New α-Amino Phosphonates Containing 3-Amino-4(3H) Quinazolinone Moiety as Anticancer and Antimicrobial Agents: DFT, NBO, and Vibrational Studies

2018 ◽  
Vol 15 (2) ◽  
pp. 286-296 ◽  
Author(s):  
Mohamed K. Awad ◽  
Mahmoud F. Abdel-Aal ◽  
Faten M. Atlam ◽  
Hend A. Hekal
Keyword(s):  
Biological Activity ◽  
Cell Line ◽  
Quantum Chemical ◽  
Density Functional ◽  
Carcinoma Cell ◽  
Liver Carcinoma ◽  
Anticancer Activities ◽  
Functional Theory ◽  
Ft Ir ◽  
Good Agreement

Aim and Objective: Synthesis of new .-aminophosphonates containing quinazoline moiety through Kabachnik-Fields reaction in the presence of copper triflate catalyst [32], followed by studying their antimicrobial activities and in vitro anticancer activities against liver carcinoma cell line (HepG2) with the hope that new anticancer agents could be developed. Also, the quantum chemical calculations are performed using density functional theory (DFT) to study the effect of the changes of molecular and electronic structures on the biological activity of the investigated compounds. Materials and Method: The structures of the synthesized compounds are confirmed by FT-IR, 1H NMR, 13C NMR, 31P NMR and MS spectral data. The synthesized compounds show significant antimicrobial and also remarkable cytotoxicity anticancer activities against liver carcinoma cell line (HepG2). Density functional theory (DFT) was performed to study the effect of the molecular and electronic structure changes on the biological activity. Results: It was found that the electronic structure of the substituents affects on the reaction yield. The electron withdrawing substituent, NO2 group 3b, on the aromatic aldehydes gave a good yield more than the electron donating substituent, OH group 3c. The electron deficient on the carbon atom of the aldehydic group may increase the interaction of the Lewis acid (Cu(OTf)2) and the Lewis base (imine nitrogen), and accordingly, facilitate the formation of imine easily, which is attacked by the nucleophilic phosphite species to give the α- aminophosphonates. Conclusion: The newly synthesized compounds exhibit a remarkable inhibition of the growth of Grampositive, Gram-negative bacteria and fungi at low concentrations. The cytotoxicity of the synthesized compounds showed a significant cytotoxicity against the liver cancer cell line (HepG 2). Also, it was shown from the quantum chemical calculations that the electron-withdrawing substituent increases the biological activity of the α-aminophosphonates more than the electron donating group which was in a good agreement with the experimental results. Also, a good agreement between the experimental FT-IR and the calculated one was found.

DFT study on thermo-elastic properties of Ru2FeZ (Z = Si, Ge, Sn) Heusler alloys

2018 ◽  
Vol 32 (05) ◽  
pp. 1850045 ◽  
Author(s):  
Aneeza Iftikhar ◽  
Afaq Ahmad ◽  
Iftikhar Ahmad ◽  
Muhammad Rizwan
Keyword(s):  
Thermal Stability ◽  
Elastic Properties ◽  
Density Functional ◽  
Heusler Alloys ◽  
Longitudinal Mode ◽  
Transverse Mode ◽  
Functional Theory ◽  
Formation Energies ◽  
Thermal Stability Of ◽  
Temperature Melting

We studied the thermo-elastic properties of Ru2FeZ (Z[Formula: see text]=[Formula: see text]Si, Ge, Sn) Heusler alloys within the framework of density functional theory. Thermo-elastic properties corresponding to elastic modulus, anisotropy, phase stability, elastic wave velocities, thermal stability, Debye temperature, melting temperature, thermal conductivity and formation energy are calculated. The elastic constants C[Formula: see text] predict the structural and dynamical stabilities while the formation energies show thermal stability of the alloys at 0 K. Pugh’s and Poisson’s ratios display the ductile nature of alloys. All alloys are anisotropic and we also observed that Ru2FeSn is the hardest material than Ru2FeSi and Ru2FeGe. Moreover, longitudinal mode of vibrations are also observed and are maximum along [100], [110] and [111] directions than the transverse mode of vibrations.

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