scholarly journals The B Chromosomes of Prochilodus lineatus (Teleostei, Characiformes) Are Highly Enriched in Satellite DNAs

Cells ◽  
2021 ◽  
Vol 10 (6) ◽  
pp. 1527
Author(s):  
José Henrique Forte Stornioli ◽  
Caio Augusto Gomes Goes ◽  
Rodrigo Milan Calegari ◽  
Rodrigo Zeni dos Santos ◽  
Leonardo Moura Giglio ◽  
...  
Keyword(s):  
Repetitive Dna ◽  
Fish Species ◽  
Satellite Dna ◽  
B Chromosomes ◽  
Entire Population ◽  
Satellite Dnas ◽  
Prochilodus Lineatus ◽  
Supernumerary Chromosomes ◽  
Morphological Variants ◽  
First Time

B or supernumerary chromosomes are dispensable elements that are widely present in numerous eukaryotes. Due to their non-recombining nature, there is an evident tendency for repetitive DNA accumulation in these elements. Thus, satellite DNA plays an important role in the evolution and diversification of B chromosomes and can provide clues regarding their origin. The characiform Prochilodus lineatus was one of the first discovered fish species bearing B chromosomes, with all populations analyzed so far showing one to nine micro-B chromosomes and exhibiting at least three morphological variants (Ba, Bsm, and Bm). To date, a single satellite DNA is known to be located on the B chromosomes of this species, but no information regarding the differentiation of the proposed B-types is available. Here, we characterized the satellitome of P. lineatus and mapped 35 satellite DNAs against the chromosomes of P. lineatus, of which six were equally located on all B-types and this indicates a similar genomic content. In addition, we describe, for the first time, an entire population without B chromosomes.

Satellite DNA in the ant Messor structor (Hymenoptera, Formicidae)

Genome ◽  
1999 ◽  
Vol 42 (5) ◽  
pp. 881-886 ◽  
Author(s):  
P Lorite ◽  
MF García ◽  
T Palomeque
Keyword(s):  
Key Words ◽  
Repetitive Dna ◽  
Tandem Repeat ◽  
Satellite Dna ◽  
Restriction Analysis ◽  
First Record ◽  
Satellite Dnas ◽  
Total Dna

This paper is the first record of the satellite DNA of Formicidae. The satellite DNA of the ant Messor structor is organized in a tandem repeat of monomers of 79 bp. Like satellite DNAs of other insects, it is AT rich and presents direct and inverted internal repeats. Restriction analysis of the total DNA with methylation-sensitive enzymes strongly suggests that this DNA is undermethylated. The presence of this repetitive DNA in other species of the genus Messor is also tested. Key words: Formicidae, methylation, nucleotide DNA composition, satellite DNA.

scholarly journals Isolation of a Pericentromeric Satellite DNA Family in Chnootriba argus (Henosepilachna argus) with an Unusual Short Repeat Unit (TTAAAA) for Beetles

Insects ◽  
2019 ◽  
Vol 10 (9) ◽  
pp. 306 ◽  
Author(s):  
Pablo Mora ◽  
Jesús Vela ◽  
Areli Ruiz-Mena ◽  
Teresa Palomeque ◽  
Pedro Lorite
Keyword(s):  
Repetitive Dna ◽  
Satellite Dna ◽  
Repeat Unit ◽  
Pericentromeric Region ◽  
Fish Analysis ◽  
Agricultural Pests ◽  
Base Pairs ◽  
Satellite Dnas ◽  
Repeat Units

Ladybird beetles (Coccinellidae) are one of the largest groups of beetles. Among them, some species are of economic interest since they can act as a biological control for some agricultural pests whereas other species are phytophagous and can damage crops. Chnootriba argus (Coccinellidae, Epilachnini) has large heterochromatic pericentromeric blocks on all chromosomes, including both sexual chromosomes. Classical digestion of total genomic DNA using restriction endonucleases failed to find the satellite DNA located on these heterochromatic regions. Cloning of C0t-1 DNA resulted in the isolation of a repetitive DNA with a repeat unit of six base pairs, TTAAAA. The amount of TTAAAA repeat in the C. argus genome was about 20%. Fluorescence in situ hybridization (FISH) analysis and digestion of chromosomes with the endonuclease Tru9I revealed that this repetitive DNA could be considered as the putative pericentromeric satellite DNA (satDNA) in this species. The presence of this satellite DNA was tested in other species of the tribe Epilachnini and it is also present in Epilachna paenulata. In both species, the TTAAAA repeat seems to be the main satellite DNA and it is located on the pericentromeric region on all chromosomes. The size of this satDNA, which has only six base pairs is unusual in Coleoptera satellite DNAs, where satDNAs usually have repeat units of a much larger size. Southern hybridization and FISH proved that this satDNA is conserved in some Epilachnini species but not in others. This result is in concordance with the controversial phylogenetic relationships among the genera of the tribe Epilachnini, where the limits between genera are unclear.

Great Abundance of Satellite DNA in Proceratophrys (Anura, Odontophrynidae) Revealed by Genome Sequencing

2020 ◽  
Vol 160 (3) ◽  
pp. 141-147 ◽  
Author(s):  
Marcelo J. da Silva ◽  
Raquel Fogarin Destro ◽  
Thiago Gazoni ◽  
Hideki Narimatsu ◽  
Paulo S. Pereira dos Santos ◽  
...  
Keyword(s):  
Repetitive Dna ◽  
Sex Chromosomes ◽  
Dna Sequences ◽  
Satellite Dna ◽  
Sex Chromosome ◽  
Repetitive Sequences ◽  
Centromere Function ◽  
Sex Chromosome System ◽  
First Time ◽  
Eukaryotic Genomes

Most eukaryotic genomes contain substantial portions of repetitive DNA sequences. These are located primarily in highly compacted heterochromatin and, in many cases, are one of the most abundant components of the sex chromosomes. In this sense, the anuran Proceratophrys boiei represents an interesting model for analyses on repetitive sequences by means of cytogenetic techniques, since it has a karyotype with large blocks of heterochromatin and a ZZ/ZW sex chromosome system. The present study describes, for the first time, families of satellite DNA (satDNA) in the frog P. boiei. Its genome size was estimated at 1.6 Gb, of which 41% correspond to repetitive sequences, including satDNAs, rDNAs, transposable elements, and other elements characterized as non-repetitive. The satDNAs were mapped by FISH in the centromeric and pericentromeric regions of all chromosomes, suggesting a possible involvement of these sequences in centromere function. SatDNAs are also present in the W sex chromosome, occupying the entire heterochromatic area, indicating a probable contribution of this class of repetitive DNA to the differentiation of the sex chromosomes in this species. This study is a valuable contribution to the existing knowledge on repetitive sequences in amphibians. We show the presence of repetitive DNAs, especially satDNAs, in the genome of P. boiei that might be of relevance in genome organization and regulation, setting the stage for a deeper functional genome analysis of Proceratophrys.

scholarly journals Rex Retroelements and Teleost Genomes: An Overview

2018 ◽  
Vol 19 (11) ◽  
pp. 3653 ◽  
Author(s):  
Federica Carducci ◽  
Marco Barucca ◽  
Adriana Canapa ◽  
Maria Biscotti
Keyword(s):  
Transposable Elements ◽  
Repetitive Dna ◽  
Sex Chromosomes ◽  
Genomic Organization ◽  
Karyotype Evolution ◽  
High Variability ◽  
Satellite Dnas ◽  
Supernumerary Chromosomes ◽  
Species Evolution ◽  
Evolutionary Mode

Repetitive DNA is an intriguing portion of the genome still not completely discovered and shows a high variability in terms of sequence, genomic organization, and evolutionary mode. On the basis of the genomic organization, it includes satellite DNAs, which are organized as long arrays of head-to-tail linked repeats, and transposable elements, which are dispersed throughout the genome. These repeated elements represent a considerable fraction of vertebrate genomes contributing significantly in species evolution. In this review, we focus our attention on Rex1, Rex3 and Rex6, three elements specific of teleost genomes. We report an overview of data available on these retroelements highlighting their significative impact in chromatin and heterochromatin organization, in the differentiation of sex chromosomes, in the formation of supernumerary chromosomes, and in karyotype evolution in teleosts.

Distribution and complex organization of satellite DNA sequences in Aveneae species

Genome ◽  
1996 ◽  
Vol 39 (6) ◽  
pp. 1045-1050 ◽  
Author(s):  
Bärbel Grebenstein ◽  
Oliver Grebenstein ◽  
Wilhelm Sauer ◽  
Vera Hemleben
Keyword(s):  
Repetitive Dna ◽  
Dna Sequences ◽  
Satellite Dna ◽  
Sequence Similarity ◽  
Satellite Dnas ◽  
A Genome ◽  
Complex Organization ◽  
Dna Elements ◽  
Taxonomic Groups ◽  
Dna Components

Distribution, organization, and molecular analysis of four unrelated satellite DNA components in Aveneae species are described. Highly repeated DNA elements were cloned from Helictotrichon convolutum (CON1 and CON2) and Helictotrichon compression (COM1 and COM2). The lengths of the repeat monomers are 365 bp (CON1), 562 bp (CON2), 346 bp (COM1), and 476 bp (COM2). Similar repeats were detected by dot blots, Southern blots, and by DNA sequencing in other species of the genus Helictotrichon, in Aveneae species, and in species of the tribes Andropogoneae and Oryzeae. All four satellite DNAs are differently distributed in the taxonomic groups mentioned above. Remarkably, the longer elements are built up in a complex pattern of either shorter subrepeats arranged in tandem (COM2) or by duplications inserted into an original 369-bp element (CON2). Shorter representatives, 190 bp, similar to CON1 elements occur in Holcus species. In Koeleria species, COM1-related repeats are only 180 bp in length. No similarity was found among the sequences CON2, COM1, and COM2 or with sequences of other repetitive DNA elements of the grasses, but CON1 shows sequence similarity to an A genome specific repetitive DNA of Oryza (rice). Key words : genome evolution, grasses, Poaceae, repetitive DNA, wild oats.

scholarly journals Transmission Behavior of B Chromosomes in Prochilodus lineatus (Characiformes, Prochilodontidae)

2015 ◽  
Vol 147 (2-3) ◽  
pp. 179-185
Author(s):  
Manolo Penitente ◽  
Sandro N. Daniel ◽  
José A. Senhorini ◽  
Fausto Foresti ◽  
Fábio Porto-Foresti
Keyword(s):  
Distribution Pattern ◽  
B Chromosome ◽  
B Chromosomes ◽  
Prochilodus Lineatus ◽  
Supernumerary Chromosomes ◽  
Transmission Pattern ◽  
Extinction Process ◽  
Controlled Crosses

The population of Prochilodus lineatus found in the Mogi-Guaçu River is karyotypically polymorphic, carrying acrocentric, metacentric, and submetacentric B chromosomes. The analysis of each B chromosome frequency in this species revealed a variation in the distribution pattern, with the metacentric type having the highest frequency (73.30%), followed by submetacentric (25.22%) and acrocentric B chromosomes (1.48%). The transmission pattern of the supernumerary chromosomes was identified by controlled crosses, and it was shown that the acro- and submetacentric B chromosomes have a transmission pattern below the Mendelian rate (kB = 0.333 and kB = 0.385, respectively), but the metacentric variant has a cumulative transmission pattern (kB = 0.587). These results indicate that the acro- and submetacentric B chromosomes are undergoing an extinction process, while the metacentric B chromosomes appear to be accumulating in frequency with each generation.

scholarly journals The Pontastacus leptodactylus (Astacidae) Repeatome Provides Insight Into Genome Evolution and Reveals Remarkable Diversity of Satellite DNA

2021 ◽  
Vol 11 ◽  
Author(s):  
Ljudevit Luka Boštjančić ◽  
Lena Bonassin ◽  
Lucija Anušić ◽  
Leona Lovrenčić ◽  
Višnja Besendorfer ◽  
...  
Keyword(s):  
Repetitive Dna ◽  
Satellite Dna ◽  
Chromosomal Evolution ◽  
Repetitive Elements ◽  
Centromeric Heterochromatin ◽  
Dna Repeats ◽  
Satellite Repeats ◽  
Interstitial Telomeric Repeats ◽  
Low Coverage ◽  
First Time

Pontastacus leptodactylus is a native European crayfish species found in both freshwater and brackish environments. It has commercial importance for fisheries and aquaculture industries. Up till now, most studies concerning P. leptodactylus have focused onto gaining knowledge about its phylogeny and population genetics. However, little is known about the chromosomal evolution and genome organization of this species. Therefore, we performed clustering analysis of a low coverage genomic dataset to identify and characterize repetitive DNA in the P. leptodactylus genome. In addition, the karyogram of P. leptodactylus (2n = 180) is presented here for the first time consisting of 75 metacentric, 14 submetacentric, and a submetacentric/metacentric heteromorphic chromosome pair. We determined the genome size to be at ~18.7 gigabase pairs. Repetitive DNA represents about 54.85% of the genome. Satellite DNA repeats are the most abundant type of repetitive DNA, making up to ~28% of the total amount of repetitive elements, followed by the Ty3/Gypsy retroelements (~15%). Our study established a surprisingly high diversity of satellite repeats in P. leptodactylus. The genome of P. leptodactylus is by far the most satellite-rich genome discovered to date with 258 satellite families described. Of the five mapped satellite DNA families on chromosomes, PlSAT3-411 co-localizes with the AT-rich DAPI positive probable (peri)centromeric heterochromatin on all chromosomes, while PlSAT14-79 co-localizes with the AT-rich DAPI positive (peri)centromeric heterochromatin on one chromosome and is also located subterminally and intercalary on some chromosomes. PlSAT1-21 is located intercalary in the vicinity of the (peri)centromeric heterochromatin on some chromosomes, while PlSAT6-70 and PlSAT7-134 are located intercalary on some P. leptodactylus chromosomes. The FISH results reveal amplification of interstitial telomeric repeats (ITRs) in P. leptodactylus. The prevalence of repetitive elements, especially the satellite DNA repeats, may have provided a driving force for the evolution of the P. leptodactylus genome.

Characterization and evolution of spearfishing in Madeira archipelago, Eastern Atlantic

2020 ◽  
Vol 33 ◽  
pp. 15
Author(s):  
Roi Martínez-Escauriaza ◽  
Claudio Vieira ◽  
Lídia Gouveia ◽  
Nuno Gouveia ◽  
Margarida Hermida
Keyword(s):  
Fish Species ◽  
Young Men ◽  
Coastal Areas ◽  
Teleost Fishes ◽  
The North ◽  
Southeast Coast ◽  
Madeira Archipelago ◽  
First Time

Data obtained from licenses of spearfishers and surveys conducted in 2004 and 2017 allowed for the analysis, for the first time, of the practice of spearfishing in the Madeira archipelago. Only a small percentage of the population practices spearfishing, mostly local young men. Most of them practice the activity with a partner throughout most of the year and along most of the island's coastal areas, although preferentially along the North and Southeast coast. Results show how, in recent years, despite the population of spearfishers decreasing, the abundance in the annual catch potentially increased, probably due to the higher investment of time in this activity. It has been observed that many fishers complement their catches with manual collecting of invertebrates. Overall, 40 teleost fishes and also 4 crustaceans and 8 molluscs were identified. The most frequently captured fish species were parrotfish and white seabream, while limpets were the most collected invertebrates in both selected periods.

Occurrence and Origin of Supernumerary Chromosomes in Partamona (Hymenoptera: Apidae: Meliponini)

2016 ◽  
Vol 150 (1) ◽  
pp. 68-75 ◽  
Author(s):  
Diana P. Machado ◽  
Elder A. Miranda ◽  
Mariana C. Dessi ◽  
Camila P. Sabadini ◽  
Marco A. Del Lama
Keyword(s):  
High Frequency ◽  
Scar Marker ◽  
Sequence Data ◽  
Low Frequency ◽  
B Chromosomes ◽  
First Report ◽  
Supernumerary Chromosomes

Samples from 861 colonies of 12 Partamona species from 125 Brazilian localities were analysed for a SCAR marker specific to the B chromosomes of P. helleri. We identified the SCAR marker in 6 of the 12 species analysed, including 2 (P. gregaria and P. chapadicola) from the pearsoni clade. This is the first report on the presence of this marker in Partamona species that are not included in the cupira clade, which indicates that the B chromosomes probably are more widespread in this genus than previously thought. The analysis revealed a high frequency of the SCAR marker in the samples of P. helleri (0.47), P. cupira (0.46), and P. rustica (0.29), and a low frequency in P. aff. helleri (0.06). The frequency of the marker in P. helleri was correlated with the latitude of the sampling locality, decreasing from north to south. Sequence data on the SCAR marker from 50 individuals of the 6 species in which the presence of this marker was shown revealed a new scenario for the origin of the B chromosomes in Partamona.

Structural hybridity and supernumerary chromosomes in a diploid Tradescantia hirsuticaulis

1975 ◽  
Vol 53 (5) ◽  
pp. 456-465 ◽  
Author(s):  
C. C. Chinnappa
Keyword(s):  
Reciprocal Translocation ◽  
Cytological Study ◽  
B Chromosomes ◽  
The Other ◽  
Meiotic Pairing ◽  
Structural Hybridity ◽  
Supernumerary Chromosomes

Cytological study of a diploid (2n = 12) population of Tradescantia hirsuticaulis Small from Stone Mountain, Georgia, revealed striking variation in four plants growing in a cluster, indicating that they constitute different genotypes. The occurrence of B chromosomes, fragments, and aneusomaty in the plants is associated with structural hybridity in the chromosomes. Two plants were homozygotes with simple meiotic pairing, one was heterozygous for a reciprocal translocation, and the other was a heterozygote for two interchanges as well as for inversions. The behavior and the origin of B chromosomes, fragments, and structural hybridity are discussed.

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