scholarly journals Deep Learning-Based Segmentation of Various Brain Lesions for Radiosurgery

2021 ◽  
Vol 11 (19) ◽  
pp. 9180
Author(s):  
Siangruei Wu ◽  
Yihong Wu ◽  
Haoyun Chang ◽  
Florence T. Su ◽  
Hengchun Liao ◽  
...  
Keyword(s):  
Deep Learning ◽  
Sampling Method ◽  
State Of The Art ◽  
Pituitary Tumors ◽  
Semantic Segmentation ◽  
Brain Lesions ◽  
Training Dataset ◽  
Training Set ◽  
Segmentation Algorithms ◽  
Method Model

Semantic segmentation of medical images with deep learning models is rapidly being developed. In this study, we benchmarked state-of-the-art deep learning segmentation algorithms on our clinical stereotactic radiosurgery dataset. The dataset consists of 1688 patients with various brain lesions (pituitary tumors, meningioma, schwannoma, brain metastases, arteriovenous malformation, and trigeminal neuralgia), and we divided the dataset into a training set (1557 patients) and test set (131 patients). This study demonstrates the strengths and weaknesses of deep-learning algorithms in a fairly practical scenario. We compared the model performances concerning their sampling method, model architecture, and the choice of loss functions, identifying suitable settings for their applications and shedding light on the possible improvements. Evidence from this study led us to conclude that deep learning could be promising in assisting the segmentation of brain lesions even if the training dataset was of high heterogeneity in lesion types and sizes.

scholarly journals Orchard Mapping with Deep Learning Semantic Segmentation

Sensors ◽  
2021 ◽  
Vol 21 (11) ◽  
pp. 3813
Author(s):  
Athanasios Anagnostis ◽  
Aristotelis C. Tagarakis ◽  
Dimitrios Kateris ◽  
Vasileios Moysiadis ◽  
Claus Grøn Sørensen ◽  
...  
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Semantic Segmentation ◽  
Automated Detection ◽  
Aerial Images ◽  
Training Dataset ◽  
Field Boundary ◽  
Different Seasons ◽  
Detection And Localization ◽  
Different Levels

This study aimed to propose an approach for orchard trees segmentation using aerial images based on a deep learning convolutional neural network variant, namely the U-net network. The purpose was the automated detection and localization of the canopy of orchard trees under various conditions (i.e., different seasons, different tree ages, different levels of weed coverage). The implemented dataset was composed of images from three different walnut orchards. The achieved variability of the dataset resulted in obtaining images that fell under seven different use cases. The best-trained model achieved 91%, 90%, and 87% accuracy for training, validation, and testing, respectively. The trained model was also tested on never-before-seen orthomosaic images or orchards based on two methods (oversampling and undersampling) in order to tackle issues with out-of-the-field boundary transparent pixels from the image. Even though the training dataset did not contain orthomosaic images, it achieved performance levels that reached up to 99%, demonstrating the robustness of the proposed approach.

scholarly journals Towards Scalable Economic Photovoltaic Potential Analysis Using Aerial Images and Deep Learning

Energies ◽  
2021 ◽  
Vol 14 (13) ◽  
pp. 3800
Author(s):  
Sebastian Krapf ◽  
Nils Kemmerzell ◽  
Syed Khawaja Haseeb Khawaja Haseeb Uddin ◽  
Manuel Hack Hack Vázquez ◽  
Fabian Netzler ◽  
...  
Keyword(s):  
Deep Learning ◽  
System Analysis ◽  
State Of The Art ◽  
Critical Role ◽  
Semantic Segmentation ◽  
Energy System ◽  
Aerial Images ◽  
Potential Analysis ◽  
3D Data ◽  
Challenges And Opportunities

Roof-mounted photovoltaic systems play a critical role in the global transition to renewable energy generation. An analysis of roof photovoltaic potential is an important tool for supporting decision-making and for accelerating new installations. State of the art uses 3D data to conduct potential analyses with high spatial resolution, limiting the study area to places with available 3D data. Recent advances in deep learning allow the required roof information from aerial images to be extracted. Furthermore, most publications consider the technical photovoltaic potential, and only a few publications determine the photovoltaic economic potential. Therefore, this paper extends state of the art by proposing and applying a methodology for scalable economic photovoltaic potential analysis using aerial images and deep learning. Two convolutional neural networks are trained for semantic segmentation of roof segments and superstructures and achieve an Intersection over Union values of 0.84 and 0.64, respectively. We calculated the internal rate of return of each roof segment for 71 buildings in a small study area. A comparison of this paper’s methodology with a 3D-based analysis discusses its benefits and disadvantages. The proposed methodology uses only publicly available data and is potentially scalable to the global level. However, this poses a variety of research challenges and opportunities, which are summarized with a focus on the application of deep learning, economic photovoltaic potential analysis, and energy system analysis.

scholarly journals InstantDL: an easy-to-use deep learning pipeline for image segmentation and classification

2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Dominik Jens Elias Waibel ◽  
Sayedali Shetab Boushehri ◽  
Carsten Marr
Keyword(s):  
Image Processing ◽  
Deep Learning ◽  
Specific Problem ◽  
State Of The Art ◽  
Image Data ◽  
Semantic Segmentation ◽  
Parameter Tuning ◽  
Cellular Processes ◽  
Minimal Effort ◽  
Instance Segmentation

Abstract Background Deep learning contributes to uncovering molecular and cellular processes with highly performant algorithms. Convolutional neural networks have become the state-of-the-art tool to provide accurate and fast image data processing. However, published algorithms mostly solve only one specific problem and they typically require a considerable coding effort and machine learning background for their application. Results We have thus developed InstantDL, a deep learning pipeline for four common image processing tasks: semantic segmentation, instance segmentation, pixel-wise regression and classification. InstantDL enables researchers with a basic computational background to apply debugged and benchmarked state-of-the-art deep learning algorithms to their own data with minimal effort. To make the pipeline robust, we have automated and standardized workflows and extensively tested it in different scenarios. Moreover, it allows assessing the uncertainty of predictions. We have benchmarked InstantDL on seven publicly available datasets achieving competitive performance without any parameter tuning. For customization of the pipeline to specific tasks, all code is easily accessible and well documented. Conclusions With InstantDL, we hope to empower biomedical researchers to conduct reproducible image processing with a convenient and easy-to-use pipeline.

scholarly journals Covid-19 detection via deep neural network and occlusion sensitivity maps

2021 ◽  
Author(s):  
Noor Ahmad ◽  
Muhammad Aminu ◽  
Mohd Halim Mohd Noor
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Deep Neural Network ◽  
State Of The Art ◽  
Color Images ◽  
Fine Tuning ◽  
Training Dataset ◽  
Learning Approaches ◽  
Learning Models ◽  
Sensitivity Maps

Deep learning approaches have attracted a lot of attention in the automatic detection of Covid-19 and transfer learning is the most common approach. However, majority of the pre-trained models are trained on color images, which can cause inefficiencies when fine-tuning the models on Covid-19 images which are often grayscale. To address this issue, we propose a deep learning architecture called CovidNet which requires a relatively smaller number of parameters. CovidNet accepts grayscale images as inputs and is suitable for training with limited training dataset. Experimental results show that CovidNet outperforms other state-of-the-art deep learning models for Covid-19 detection.

scholarly journals Automatic Instrument Segmentation in Robot-Assisted Surgery Using Deep Learning

2018 ◽  
Author(s):  
Alexey A. Shvets ◽  
Alexander Rakhlin ◽  
Alexandr A. Kalinin ◽  
Vladimir I. Iglovikov
Keyword(s):  
Deep Learning ◽  
State Of The Art ◽  
Semantic Segmentation ◽  
Robot Assisted ◽  
Automatic Instrument ◽  
Binary Segmentation ◽  
Video Feed ◽  
Class Segmentation ◽  
Segmentation Problem ◽  
Robot Assisted Surgery

AbstractSemantic segmentation of robotic instruments is an important problem for the robot-assisted surgery. One of the main challenges is to correctly detect an instrument’s position for the tracking and pose estimation in the vicinity of surgical scenes. Accurate pixel-wise instrument segmentation is needed to address this challenge. In this paper we describe our deep learning-based approach for robotic instrument segmentation. Our approach demonstrates an improvement over the state-of-the-art results using several novel deep neural network architectures. It addressed the binary segmentation problem, where every pixel in an image is labeled as an instrument or background from the surgery video feed. In addition, we solve a multi-class segmentation problem, in which we distinguish between different instruments or different parts of an instrument from the background. In this setting, our approach outperforms other methods for automatic instrument segmentation thereby providing state-of-the-art results for these problems. The source code for our solution is made publicly available.

scholarly journals A Novel Object-Based Deep Learning Framework for Semantic Segmentation of Very High-Resolution Remote Sensing Data: Comparison with Convolutional and Fully Convolutional Networks

2019 ◽  
Vol 11 (6) ◽  
pp. 684 ◽  
Author(s):  
Maria Papadomanolaki ◽  
Maria Vakalopoulou ◽  
Konstantinos Karantzalos
Keyword(s):  
Deep Learning ◽  
State Of The Art ◽  
Semantic Segmentation ◽  
Novel Object ◽  
Convolutional Networks ◽  
Learning Framework ◽  
Fully Convolutional Networks ◽  
Object Based ◽  
Deep Networks ◽  
Very High

Deep learning architectures have received much attention in recent years demonstrating state-of-the-art performance in several segmentation, classification and other computer vision tasks. Most of these deep networks are based on either convolutional or fully convolutional architectures. In this paper, we propose a novel object-based deep-learning framework for semantic segmentation in very high-resolution satellite data. In particular, we exploit object-based priors integrated into a fully convolutional neural network by incorporating an anisotropic diffusion data preprocessing step and an additional loss term during the training process. Under this constrained framework, the goal is to enforce pixels that belong to the same object to be classified at the same semantic category. We compared thoroughly the novel object-based framework with the currently dominating convolutional and fully convolutional deep networks. In particular, numerous experiments were conducted on the publicly available ISPRS WGII/4 benchmark datasets, namely Vaihingen and Potsdam, for validation and inter-comparison based on a variety of metrics. Quantitatively, experimental results indicate that, overall, the proposed object-based framework slightly outperformed the current state-of-the-art fully convolutional networks by more than 1% in terms of overall accuracy, while intersection over union results are improved for all semantic categories. Qualitatively, man-made classes with more strict geometry such as buildings were the ones that benefit most from our method, especially along object boundaries, highlighting the great potential of the developed approach.

scholarly journals Covid-19 detection via deep neural network and occlusion sensitivity maps

2021 ◽  
Author(s):  
Noor Ahmad ◽  
Muhammad Aminu ◽  
Mohd Halim Mohd Noor
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Deep Neural Network ◽  
State Of The Art ◽  
Color Images ◽  
Fine Tuning ◽  
Training Dataset ◽  
Learning Approaches ◽  
Learning Models ◽  
Sensitivity Maps

Deep learning approaches have attracted a lot of attention in the automatic detection of Covid-19 and transfer learning is the most common approach. However, majority of the pre-trained models are trained on color images, which can cause inefficiencies when fine-tuning the models on Covid-19 images which are often grayscale. To address this issue, we propose a deep learning architecture called CovidNet which requires a relatively smaller number of parameters. CovidNet accepts grayscale images as inputs and is suitable for training with limited training dataset. Experimental results show that CovidNet outperforms other state-of-the-art deep learning models for Covid-19 detection.

scholarly journals Transformer-Based Decoder Designs for Semantic Segmentation on Remotely Sensed Images

2021 ◽  
Vol 13 (24) ◽  
pp. 5100
Author(s):  
Teerapong Panboonyuen ◽  
Kulsawasd Jitkajornwanich ◽  
Siam Lawawirojwong ◽  
Panu Srestasathiern ◽  
Peerapon Vateekul
Keyword(s):  
Image Processing ◽  
Deep Learning ◽  
Natural Language Processing ◽  
Language Processing ◽  
State Of The Art ◽  
Semantic Segmentation ◽  
Landsat 8 ◽  
Convolutional Network ◽  
Image Labeling ◽  
Feature Pyramid

Transformers have demonstrated remarkable accomplishments in several natural language processing (NLP) tasks as well as image processing tasks. Herein, we present a deep-learning (DL) model that is capable of improving the semantic segmentation network in two ways. First, utilizing the pre-training Swin Transformer (SwinTF) under Vision Transformer (ViT) as a backbone, the model weights downstream tasks by joining task layers upon the pretrained encoder. Secondly, decoder designs are applied to our DL network with three decoder designs, U-Net, pyramid scene parsing (PSP) network, and feature pyramid network (FPN), to perform pixel-level segmentation. The results are compared with other image labeling state of the art (SOTA) methods, such as global convolutional network (GCN) and ViT. Extensive experiments show that our Swin Transformer (SwinTF) with decoder designs reached a new state of the art on the Thailand Isan Landsat-8 corpus (89.8% F1 score), Thailand North Landsat-8 corpus (63.12% F1 score), and competitive results on ISPRS Vaihingen. Moreover, both our best-proposed methods (SwinTF-PSP and SwinTF-FPN) even outperformed SwinTF with supervised pre-training ViT on the ImageNet-1K in the Thailand, Landsat-8, and ISPRS Vaihingen corpora.

scholarly journals Drone Image Segmentation Using Machine and Deep Learning for Mapping Raised Bog Vegetation Communities

2020 ◽  
Vol 12 (16) ◽  
pp. 2602 ◽  
Author(s):  
Saheba Bhatnagar ◽  
Laurence Gill ◽  
Bidisha Ghosh
Keyword(s):  
Image Segmentation ◽  
Deep Learning ◽  
Computation Time ◽  
Semantic Segmentation ◽  
Training Dataset ◽  
Atmospheric Conditions ◽  
Raised Bog ◽  
Vegetation Communities ◽  
Lower Accuracy ◽  
Cost Efficient

The application of drones has recently revolutionised the mapping of wetlands due to their high spatial resolution and the flexibility in capturing images. In this study, the drone imagery was used to map key vegetation communities in an Irish wetland, Clara Bog, for the spring season. The mapping, carried out through image segmentation or semantic segmentation, was performed using machine learning (ML) and deep learning (DL) algorithms. With the aim of identifying the most appropriate, cost-efficient, and accurate segmentation method, multiple ML classifiers and DL models were compared. Random forest (RF) was identified as the best pixel-based ML classifier, which provided good accuracy (≈85%) when used in conjunction graph cut algorithm for image segmentation. Amongst the DL networks, a convolutional neural network (CNN) architecture in a transfer learning framework was utilised. A combination of ResNet50 and SegNet architecture gave the best semantic segmentation results (≈90%). The high accuracy of DL networks was accompanied with significantly larger labelled training dataset, computation time and hardware requirements compared to ML classifiers with slightly lower accuracy. For specific applications such as wetland mapping where networks are required to be trained for each different site, topography, season, and other atmospheric conditions, ML classifiers proved to be a more pragmatic choice.

scholarly journals LABEL-EFFICIENT DEEP LEARNING-BASED SEMANTIC SEGMENTATION OF BUILDING POINT CLOUDS AT LOD3 LEVEL

2021 ◽  
Vol XLIII-B2-2021 ◽  
pp. 449-456
Author(s):  
Y. Cao ◽  
M. Scaioni
Keyword(s):  
Deep Learning ◽  
State Of The Art ◽  
Semantic Segmentation ◽  
Point Clouds ◽  
Training Data ◽  
Second Step ◽  
Dynamic Graph ◽  
Input Point ◽  
Supervised Methods ◽  
Global And Local

Abstract. In recent research, fully supervised Deep Learning (DL) techniques and large amounts of pointwise labels are employed to train a segmentation network to be applied to buildings’ point clouds. However, fine-labelled buildings’ point clouds are hard to find and manually annotating pointwise labels is time-consuming and expensive. Consequently, the application of fully supervised DL for semantic segmentation of buildings’ point clouds at LoD3 level is severely limited. To address this issue, we propose a novel label-efficient DL network that obtains per-point semantic labels of LoD3 buildings’ point clouds with limited supervision. In general, it consists of two steps. The first step (Autoencoder – AE) is composed of a Dynamic Graph Convolutional Neural Network-based encoder and a folding-based decoder, designed to extract discriminative global and local features from input point clouds by reconstructing them without any label. The second step is semantic segmentation. By supplying a small amount of task-specific supervision, a segmentation network is proposed for semantically segmenting the encoded features acquired from the pre-trained AE. Experimentally, we evaluate our approach based on the ArCH dataset. Compared to the fully supervised DL methods, we find that our model achieved state-of-the-art results on the unseen scenes, with only 10% of labelled training data from fully supervised methods as input.

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