scholarly journals Microsatellite-Based Genetic Characterization of the Indigenous Katjang Goat in Peninsular Malaysia

Animals ◽  
2021 ◽  
Vol 11 (5) ◽  
pp. 1328
Author(s):  
Mohd Adhan Ernie Muneerah ◽  
Nur Aida Md Tamrin ◽  
Mohd Shahrom Salisi ◽  
Shahrizim Zulkifly ◽  
Siti Shaidatul Maisarah Ghazali ◽  
...  

The Katjang goat is the only indigenous domestic goat breed in Malaysia. Following a national baseline survey from 2001 to 2002, this breed was reported to the FAO as being at risk of extinction. In this study, 36 microsatellite markers were screened, and 25 polymorphic markers were used to analyze the genetic structure of the Katjang goat breed in Peninsular Malaysia. A sample set of data derived from another 10 populations from three published research studies was used as an outgroup for an inter-population genetic study. The analysis showed that the mean value of the observed heterozygosity was 0.29 ± 0.14, and the expected heterozygosity was 0.72 ± 0.14, which indicated low genetic diversity. The inbreeding coefficient, FIS, was high, at 0.46. Significant (p < 0.01) deviations from the Hardy Weinberg equilibrium were noted for all loci. The bottleneck analysis using the Wilcoxon Rank test under the two-phase model of mutation was significant (p < 0.01) for heterozygosity excess, which suggested that the Katjang breed had undergone significant population reduction in the past. Through combined analysis of data from publicly available research, almost the entire population of Katjang goats represent the centroid and are grouped together on a multidimensional scaling plot, except for the Terengganu population. Network analysis revealed that the goat population from Pahang formed the centrality of the network.

2021 ◽  
pp. 1-5
Author(s):  
David Samuel Kereh ◽  
John Pieter ◽  
William Hamdani ◽  
Haryasena Haryasena ◽  
Daniel Sampepajung ◽  
...  

BACKGROUND: AGR2 expression is associated with luminal breast cancer. Overexpression of AGR2 is a predictor of poor prognosis. Several studies have found correlations between AGR2 in disseminated tumor cells (DTCs) in breast cancer patients. OBJECTIVE: This study aims to determine the correlation between anterior Gradient2 (AGR2) expression with the incidence of distant metastases in luminal breast cancer. METHODS: This study was an observational study using a cross-sectional method and was conducted at Wahidin Sudirohusodo Hospital and the network. ELISA methods examine AGR2 expression from blood serum of breast cancer patients. To compare the AGR2 expression in metastatic patients and the non-metastatic patient was tested with Mann Whitney test. The correlation of AGR2 expression and metastasis was tested with the Rank Spearman test. RESULTS: The mean value of AGR2 antibody expression on ELISA in this study was 2.90 ± 1.82 ng/dl, and its cut-off point was 2.1 ng/dl. Based on this cut-off point value, 14 subjects (66.7%) had overexpression of AGR2 serum ELISA, and 7 subjects (33.3%) had not. The mean value AGR2 was significantly higher in metastatic than not metastatic, 3.77 versus 1.76 (p < 0.01). The Spearman rank test obtained a p-value for the 2 tail test of 0.003 (p < 0.05), which showed a significant correlation of both, while the correlation coefficient of 0.612 showed a strong positive correlation of AGR2 overexpression and metastasis. CONCLUSIONS: AGR2 expression is correlated with metastasis in Luminal breast cancer.


BMJ Open ◽  
2021 ◽  
Vol 11 (8) ◽  
pp. e046749
Author(s):  
Daisuke Kato ◽  
Ichiro Kawachi ◽  
Junko Saito ◽  
Naoki Kondo

ObjectivesThere are limitations to defining multimorbidity (MM) based on a simple count of diseases. To address these limitations, the concept of complex MM (CMM) focuses on how many body systems are affected in a single patient, rather than counting comorbid conditions. This study compared the prediction of mortality among older Japanese adults between CMM and conventional MM.DesignA population-based prospective cohort study.SettingThe Japan Gerontological Evaluation Study, a nationwide longitudinal cohort study, which ran from 2010 to 2016.ParticipantsFunctionally independent individuals who were older than 65 and had complete illness data at the time of baseline survey were eligible.Outcomes measureCMM was defined as the coexistence of 3 or more body system disorders at baseline. We calculated the propensity for each individual to develop CMM based on a wide array of characteristics, including socioeconomic status and health behaviours. Individuals with and without CMM were then matched on their propensity scores before we estimated overall survival using a log-rank test.ResultsOur 6-year follow-up included 38 889 older adults: 20 233 (52.0%) and 7565 (19.5%) adults with MM and CMM, respectively. In the MM-matched cohort (n=15 666 pairs), the presence of MM was significantly associated with increased mortality (HR 1.07; 95% CI 1.01 to 1.14; p=0.02 by the log-rank test). A similar mortality association was found in the CMM-matched cohort (n=7524 pairs, HR, 1.07; 95% CI 0.99 to 1.16; p=0.08 by the log-rank test).ConclusionThis is the first study to report the association between CMM and mortality among older adults in Japan. MM and CMM predict mortality in older adults to a similar degree. This finding needs to be replicated with more precision in larger samples.


Open Medicine ◽  
2006 ◽  
Vol 1 (4) ◽  
pp. 392-398
Author(s):  
Kazima Bulayeva ◽  
John McGrath

AbstractWhile the season-of-birth effect is one of the most consistent epidemiological features of schizophrenia, there is a lack of consistency with respect to the interaction between season of birth and family history of schizophrenia. Apart from family history, measures related to consanguinity can be used as proxy markers of genomic heterogeneity. Thus, these measures may provide an alternate, indirect index of genetic susceptibility. We had the opportunity to explore the interaction between season of birth and measure of consanguinity in well-described genetic isolates in Daghestan, some of which are known for their relatively high prevalence of schizophrenia. Our previous population-genetic study showed Daghestan has an extremely high genetic diversity between the ethnic populations and a low genetic diversity within them. The isolates selected for this study include some with more than 200 and some with less than 100 generations of demographical history since their founding. Based on pedigrees of multiply-affected families, we found that among individuals with schizophrenia, the measure of consanguinity was significantly higher in the parents of those born in winter/spring compared to those born in summer/autumn. Furthermore, compared to summer/autumn born, winter/spring born individuals with schizophrenia had an earlier age-of-onset, and more prominent auditory hallucinations. Our results suggest that the offspring of consanguineous marriages, and thus those with reduced allelic heterogeneity, may be more susceptible to the environmental factor(s) underpinning the season-of-the effect in schizophrenia.


Author(s):  
Muhammad Saputra ◽  
Candra Kusuma Negara ◽  
Anna Martiana Afida ◽  
Henny Puspasari ◽  
Akhmad Murjani

Introduction: Stroke risk factors are related to the circumstances of a person's health status, namely hypercholesterolemia (excess cholesterol levels) and hypertension (high blood pressure).Methods: A correlative descriptive analytic observational study using cross sectional approach. The number of samples taken is as many as 62 people using the Slovinformula..Statistical analysis uses Sperman Rank Test and Linear regression test.Results: The results of this study indicate that the total cholesterol level of patients from 62 samples found that normal cholesterol levels amounted to 29 people (46.8%) consisting of 12 people (19.4%) with SH and 17 people ( 27.4%) with SNH and high cholesterol levels totaling 33 people (53.2%) divided into 7 people (11.3%) with SH and 26 people (42%) with SNH. There is a significant correlation between blood cholesterol levels with stroke incidence in statistical tests with p value 0,004 (p<0,05), there is a significant correlation between hypertension and stroke events withp value 0,031(p<0,05)there is no significant correlation between blood cholesterol levels and hypertension in statistical tests withp value 0,129 (p>0,05) and by using Linear regression test obtained that the correlation between blood cholesterol levels with a value of mean value hypertension  0.453 and mean 0.994 so that the most dominant with the incidence of stroke was hypertension.Conclusions: Have nothing to do with hypertension, it can be concluded here that stroke is caused by hypertension. The Suggestion is hypertension’s not only caused by cholesterol levels but there are other triggers that cause it.


2019 ◽  
Vol 74 (10) ◽  
pp. 837-848 ◽  
Author(s):  
Yudong Liu ◽  
Dayang Wang ◽  
Yingyu Ren ◽  
Ningde Jin

AbstractDue to the complex flow structure and non-uniform phase distribution in the vertical upward gas-liquid two-phase flow, an eight-electrode rotating electric field conductance sensor is used to obtain multi-channel conductance signals. The flow patterns of the vertical upward gas-liquid two-phase flow are classified according to the images obtained from a high-speed camera. Then, we employ the multivariate weighted multi-scale permutation entropy (MWMPE) to detect the instability of flow pattern transition in the gas-liquid two-phase flow. Afterwards, we compare the results of the MWMPE with those of the single-channel weighted multi-scale permutation entropy (SCWMPE) and multivariate multi-scale sample entropy (MMSE). The comparison results indicate that, compared with the SCWMPE and MMSE, the MWMPE has superior performance in terms of the high-resolution presentation of flow instability in the gas-liquid two-phase flow. Finally, we extract the mean value of the MWMPE in whole scales and the entropy rate of the MWMPE in the small scales. The results indicate that the normalized mean value and normalized entropy rate of MWMPE are very sensitive to the transitions of flow patterns, thus allowing the detection of the instability of flow pattern transition.


Blood ◽  
2021 ◽  
Vol 138 (Supplement 1) ◽  
pp. 2086-2086
Author(s):  
Caroline I. Piatek ◽  
Brian Jamieson ◽  
Scott Kolodny

Abstract Background: ITP management often requires subsequent therapy beyond current first line treatments (corticosteroids or intravenous immunoglobulin). The use of thrombopoietin receptor agonists (TPO-RAs) as second-line treatment, in lieu of splenectomy or rituximab, has become more common and is supported by recent American Society of Hematology (ASH) guidelines (Neunert, 2019). The TPO-RAs eltrombopag (ELT) and romiplostim (ROMI) have been utilized in patients with ITP for over a decade, whereas avatrombopag (AVA) was more recently approved in June 2019. Thromboembolic events (TEEs) are not uncommon in ITP, with studies showing that up to 8% of patients experience an arterial or venous event (Sarpatwari, 2010; Vianelli, 2013). As agents that potentiate endogenous platelet production, TPO-RAs as a class may increase the risk of thromboembolism, with such events occurring in a variety of TPO-RA ITP studies. However, it is not well-understood what increased risk, over and above the inherent risk associated with ITP, TPO-RAs pose in regard to thromboembolic events (Catala-Lopez, 2015). We previously reported on the general characterization of thromboembolic events occurring during the avatrombopag ITP clinical development program (ASH 2020). Currently, we evaluate platelet counts both prior to and following the specific TEE event and report on any dosage change of avatrombopag in proximity to the TEE event. Aims: To further characterize TEEs occurring across the AVA ITP clinical development program and expand the understanding of any possible role of change in platelet count (PC) as a predictor of TEEs with AVA. Methods: 4 studies were conducted evaluating AVA in patients with ITP (two Phase 2 and two Phase 3 trials). In total, 128 patients received AVA treatment, with an average duration of exposure of ≥180 days. Occurrence of TEEs was an adverse event of special interest that was monitored closely in these studies. At the time of each TEE, the following information was collected: platelet count, AVA dose, study day of event and other medical history and lifestyle factors potentially increasing the risk for thromboembolism. PCs were also collected at each study visit as well as unplanned visits per protocol. Patients with history of arterial or venous thrombosis and more than 2 significant risk factors were excluded from the Phase 3 studies. Results: As previously reported, a total of 11 TEEs occurred in 9/128 (7%) of AVA treated patients, with one patient experiencing 3 events. No clustering of events was noted, with cerebrovascular accident being the only specific event occurring in more than one patient (occurring in 2/11 patients). In the current analysis, variability was observed in the platelet count at the time of TEE, ranging from 19,000 - 571,000/µL. Two patients experienced events at a platelet count &gt;400,000/µL, whereas five events occurred at a PC &lt;50,000/µL. The mean value of three PCs prior to the event in each individual patient were low (PC&lt;130,00/µL) in 7/11 (64%), normal (PC between 130,000/µL-450,000/µL) in 4/11 (36%), and high (PC&gt;450,000/ µL ) in 0/11 (0%) of patients. The mean value of three PCs following the event in each individual patient were low in 6/11 (55%), normal in 4/11 (36%), and high in 1/11 (9%) of patients. The change in mean PC status from prior to the event to following the event was no change in 7/11 (64%), low to normal in 2/11 (18%), low to high in 0/11 (0%), normal to low in 1/11 (9%), and normal to high in 1/11 (9%) of patients. There were no changes in AVA dose within three weeks of any TEE event. The onset of thromboembolic events ranged from study day 8 to 335, with no clear pattern materializing regarding duration of drug exposure and the onset of the TEE. Thromboembolic events were noted at daily doses of AVA ranging from 10 - 40 mg. No deaths were noted in the ITP development program. Conclusions: The TEEs noted with AVA treatment typically occurred at PCs below the upper bound of normal (450,000/µL), without relationship to drug dose and at varying number of days on study drug. No clear patterns regarding the occurrence of thromboembolic events with AVA treatment or platelet count could be determined. Clinicians should carefully monitor PC and assess the risk for thromboembolism in each individual patient treated with a TPO-RA. Figure 1 Figure 1. Disclosures Piatek: Dova: Consultancy, Speakers Bureau; Apellis: Research Funding; Alexion: Consultancy, Research Funding; Rigel: Consultancy, Research Funding. Jamieson: Sobi, Inc.: Current Employment. Kolodny: Sobi, Inc.: Current Employment.


Author(s):  
Moonkyu Hwang ◽  
Young-Jin Lee ◽  
Bub-Dong Chung

The two-phase system analysis code MARS [1] has been used for the uncertainty quantification of NEPTUN reflood test [2] analysis. By performing 10,000 calculations based on a random variation of the MARS model parameters and measured data, a mean value, and the 95% upper bounds are traced along the number of calculations. The CPU-intensive calculations were performed using the 11 node PC-cluster under Linux platform. The Monte-Carlo calculation results suggest a total number of 2,000 calculations would be sufficient to determine the stable mean and 95% upper bound values. The peak temperatures predictions are also used to find the 95% bounding values by using the Wilks’ method. For the 1st order one-sided formula, every 59 peak temperatures are examined to locate the bounding temperature, with a 95% confidence. The 2nd and 3rd order values were found in a similar way. The uncertainty band by the Wilks’ formula, when compared with the true 95% bounding value, is observed to be quite broad, especially in the case of the 1st order. The 2nd or 3rd orders or a full Monte-Carlo method would be necessary to demonstrate that the safety of the plant is ensured with a sufficient margin. A supplementary sensitivity study, for the nine uncertain parameters selected for the NEPTUN analysis, is also performed to find the degree of influence of each parameter on the peak rod temperature.


The variation of surface resistance with temperature and composition was determined for the indium-tin alloy system. Measurements made at 3 GHz enabled small inclusions of phases to be detected. Typically two transitions were seen corresponding to the eutectic and proeutectic constituents of the alloys. Between these transitions the surface resistance hardly changed with temperature. The flatness and mean value of the surface resistance in this temperature range were found to vary with the alloy’s composition and the annealing conditions. Annealing was also found to affect the width of the superconducting transitions. Explanations for the results are suggested in terms of the flow of current in such systems and the proximity effect. Evidence was seen of a third transition under some annealing conditions. This extra transition may be explained by altering the beta phase boundary or adding a new intermediate phase to the present phase diagram. It is also suggested that the γ -phase should begin at about 72 at. % tin rather than that presently accepted.


2020 ◽  
Vol 6 (1) ◽  
pp. 129-135
Author(s):  
Ivan Jurak ◽  
Dalibor Kiseljak ◽  
Ozren Rađenović

Functional Movement Screen is an established method of assessing dynamic posture of athletes. Validity and reliability of FMS as a screening tool is debated and one of the foremost criticism is directed at its subjectivity. To the authors’ knowledge, there is no previous research using Kinovea to precisely assess FMS scores. 10 young competitive gymnasts (4 female and 6 male) were included in this study. The participants were scored by an experienced FMS assessor on site as per standard FMS protocol. Afterwards, the same participants were scored again using Kinovea to achieve more objective measurements. Wilcoxon Signed Rank Test for FMS scores versus FMS-Kinovea scores identified FMS test no. 1 (Deep Squat) as significantly different. The median score of Deep Squat assessed on site was 2 (mean value: 2.1), while that same test, scored with Kinovea, had the median score of 1 (mean value: 1.2). Paired Pitman-Morgan test for equality of variances was used to test the dispersion of scores. None were shown to be statistically significant, however, overall FMS score was near significance threshold implying that there is a difference although our power of study was too low probably due to low sample size. We detected significant difference in the scores of Deep Squat test, which is not surprising since it is the most complicated test to asses due to a large number of variables the assessor must evaluate.


Sign in / Sign up

Export Citation Format

Share Document