scholarly journals High Genetic Diversity of an Invasive Alien Species: Comparison between Fur-Farmed and Feral American Mink (Neovison vison) in China

Animals ◽  
2021 ◽  
Vol 11 (2) ◽  
pp. 472
Author(s):  
Lina Zhang ◽  
Yan Hua ◽  
Shichao Wei
Keyword(s):  
Genetic Diversity ◽  
Alien Species ◽  
Dna Sequences ◽  
American Mink ◽  
Population Expansion ◽  
Northeastern China ◽  
Neovison Vison ◽  
High Genetic Diversity ◽  
Genetic Characteristics ◽  
Short Period

Genetic characteristics play an important role in alien species for achieving high adaptation and rapid evolution in a new environment. The American mink (Neovison vison) is one of the best-known and most widespread invasive species that has successfully invaded the Eurasian mainland over quite a short period, including most parts of northeastern China. However, genetic information on farmed and feral American mink populations introduced in China is completely lacking. In this study, we combined mitochondrial DNA sequences and polymorphic microsatellites to examine the genetic divergence and genetic diversity of farmed and feral American mink populations. Our results suggest that there is admixture of individuals of different genetic characteristics between farmed and feral populations of mink. Furthermore, the genetic diversity of both farmed and feral American mink populations was high, and no bottleneck or population expansion was detected in most of the populations. These findings not only highlight the genetic characteristics of American mink in northeastern China but also contribute to the general understanding of the invasiveness of farmed species.

scholarly journals Genetic characteristics of yellow seabream Acanthopagrus latus (Houttuyn, 1782) (Teleostei: Sparidae) after stock enhancement in southeastern China coastal waters

2021 ◽  
Author(s):  
Puqing Song ◽  
Cheng Liu ◽  
Zizi Cai ◽  
Shigang Liu ◽  
Jiali Xiang ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Coastal Waters ◽  
Population Expansion ◽  
Future Research ◽  
Beibu Gulf ◽  
High Genetic Diversity ◽  
Phylogenetic Structure ◽  
Genetic Characteristics ◽  
Nucleotide Mismatch ◽  
Baseline Information

Yellowfin seabream is an important economic fish that is widely distributed in the East and South China seas. Many attempts to enhance stocks of yellowfin seabream have occurred in China, but a lack of genetic information for this species after stock release represents an obstacle to its management and conservation. To provide scientific guidance for sustainable germplasm resource development, we sequence the mitochondrial DNA (mtDNA) control region (CR) of 123 yellowfin seabream from 6 sample populations (Xiamen, Dongshan I, Dongshan II, Yangjiang, Fangchenggang, and Beibu Gulf). Populations of both wild and cultured yellowfin seabream have high genetic diversity, which we relate to their breeding habits and growth rate. A neighbor-joining tree of CR haplotypes reveals no specific phylogenetic structure corresponding to location of fish capture. Both neutral test and nucleotide mismatch distribution analyses suggest that yellowfin seabream have experienced population expansion events. Pleistocene glacial periods and recent stock releases have played important roles in the formation of present-day phylogeographical patterns. Our study provides baseline information which will assist future research on genetic structure, genetic diversity, and historical demography of yellowfin seabream after stock release in southeast China coastal waters. The use of exotic seeds should be avoided in stock breeding and release, and relevant follow-up surveys and genetic monitoring should be undertaken to clarify the genetic impact of exotic seed use on wild populations.

Genetic Divergence among Populations of Invasive Alien Species Lantana camara L. from Selected Areas of Bangladesh

2021 ◽  
Vol 1 (01) ◽  
pp. 9-14
Author(s):  
SAILA KABIR ◽  
MD ABUL KASHEM ◽  
MOHAMMAD ZABED HOSSAIN
Keyword(s):  
Genetic Diversity ◽  
Alien Species ◽  
Invasive Alien Species ◽  
Gene Diversity ◽  
Lantana Camara ◽  
Native Plant ◽  
High Genetic Diversity ◽  
Native Plant Species ◽  
Information Index ◽  
Genetic Clustering

Lantana camara L., a well-known invasive alien species causing invasion and posing threat to native plant species community in different regions of Bangladesh. The present study aimed to investigate the genetic diversity of L. camara populations in different regions of Bangladesh. Eight RAPD markers were used in order to probe into its genetic variability. Total number of bands (202), polymorphic loci (104), per-centage of polymorphism (97.20%), average Shanon’s information index (0.3051±0.115), Nei’s gene diversity (0.4733±0.144) was found and in different populations and multiple divergent genetic clustering along with presence of unique alleles (4) for RAPD revealed high genetic diversity among the populations of L. camara in different regions of Bangladesh.

Genealogical relationship inference to identify areas of intensive poaching of the Orange-fronted Parakeet (Eupsittula canicularis)

BMC Zoology ◽  
2021 ◽  
Vol 6 (1) ◽  
Author(s):  
Gabriela Padilla-Jacobo ◽  
Tiberio C. Monterrubio-Rico ◽  
Horacio Cano-Camacho ◽  
María Guadalupe Zavala-Páramo
Keyword(s):  
Genetic Diversity ◽  
Dna Sequences ◽  
Haplotype Diversity ◽  
Coastal Region ◽  
Central American ◽  
Illegal Trade ◽  
Wild Populations ◽  
High Genetic Diversity ◽  
Genealogical Relationship ◽  
Genetic Pool

Abstract Background The Orange-fronted Parakeet (Eupsittula canicularis) is the Mexican psittacine that is most captured for the illegal pet trade. However, as for most wildlife exploited by illegal trade, the genetic diversity that is extracted from species and areas of intensive poaching is unknown. In this study, we analyzed the genetic diversity of 80 E. canicularis parakeets confiscated from the illegal trade and estimated the level of extraction of genetic diversity by poaching using the mitochondrial DNA sequences of cytochrome b (Cytb). In addition, we analyzed the genealogical and haplotypic relationships of the poached parakeets and sampled wild populations in Mexico, as a strategy for identifying the places of origin of poached parakeets. Results Poached parakeets showed high haplotype diversity (Hd = 0.842) and low nucleotide diversity (Pi = 0.00182). Among 22 haplotypes identified, 18 were found exclusively in 37 individuals, while four were detected in the remaining 43 individuals and shared with the wild populations. A rarefaction and extrapolation curve revealed that 240 poached individuals can include up to 47 haplotypes and suggested that the actual haplotype richness of poached parakeets is higher than our analyses indicate. The geographic locations of the four haplotypes shared between poached and wild parakeets ranged from Michoacan to Sinaloa, Mexico. However, the rare haplotypes detected in poached parakeets were derived from a recent genetic expansion of the species that has occurred between the northwest of Michoacan and the coastal region of Colima, Jalisco and southern Nayarit, Mexico. Conclusions Poached parakeets showed high genetic diversity, suggesting high extraction of the genetic pool of the species in central Mexico. Rarefaction and extrapolation analyses suggest that the actual haplotype richness in poached parakeets is higher than reflected by our analyses. The poached parakeets belong mainly to a very diverse genetic group of the species, and their most likely origin is between northern Michoacan and southern Nayarit, Mexico. We found no evidence that poachers included individuals from Central American international trafficking with individuals from Mexico in the sample.

Comparative genetic diversity of Cryptosporidium species causing human infections

Parasitology ◽  
2020 ◽  
Vol 147 (13) ◽  
pp. 1532-1537 ◽  
Author(s):  
Juan C. Garcia-R ◽  
Murray P. Cox ◽  
David T. S. Hayman
Keyword(s):  
Genetic Diversity ◽  
Population Expansion ◽  
Recent Population Expansion ◽  
Cryptosporidium Hominis ◽  
High Genetic Diversity ◽  
Genetic Changes ◽  
Low Genetic Diversity ◽  
Human Infections ◽  
Host Parasite ◽  
Founder Events

AbstractParasites sometimes expand their host range and cause new disease aetiologies. Genetic changes can then occur due to host-specific adaptive alterations, particularly when parasites cross between evolutionarily distant hosts. Characterizing genetic variation in Cryptosporidium from humans and other animals may have important implications for understanding disease dynamics and transmission. We analyse sequences from four loci (gp60, HSP-70, COWP and actin) representing multiple Cryptosporidium species reported in humans. We predicted low genetic diversity in species that present unusual human infections due to founder events and bottlenecks. High genetic diversity was observed in isolates from humans of Cryptosporidium meleagridis, Cryptosporidium cuniculus, Cryptosporidium hominis and Cryptosporidium parvum. A deviation of expected values of neutrality using Tajima's D was observed in C. cuniculus and C. meleagridis. The high genetic diversity in C. meleagridis and C. cuniculus did not match our expectations but deviations from neutrality indicate a recent decrease in genetic variability through a population bottleneck after an expansion event. Cryptosporidium hominis was also found with a significant Tajima's D positive value likely caused by recent population expansion of unusual genotypes in humans. These insights indicate that changes in genetic diversity can help us to understand host-parasite adaptation and evolution.

scholarly journals Genetic structure and diversity of the endangered growling grass frog in a rapidly urbanizing region

2015 ◽  
Vol 2 (8) ◽  
pp. 140255 ◽  
Author(s):  
Claire C. Keely ◽  
Joshua M. Hale ◽  
Geoffrey W. Heard ◽  
Kirsten M. Parris ◽  
Joanna Sumner ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Structure ◽  
Dna Sequences ◽  
Nuclear Dna ◽  
Urban Expansion ◽  
Nuclear Gene ◽  
Management Approach ◽  
Natural Habitats ◽  
High Genetic Diversity ◽  
Genetic Structure And Diversity

Two pervasive and fundamental impacts of urbanization are the loss and fragmentation of natural habitats. From a genetic perspective, these impacts manifest as reduced genetic diversity and ultimately reduced genetic viability. The growling grass frog ( Litoria raniformis ) is listed as vulnerable to extinction in Australia, and endangered in the state of Victoria. Remaining populations of this species in and around the city of Melbourne are threatened by habitat loss, degradation and fragmentation due to urban expansion. We used mitochondrial DNA (mtDNA) and microsatellites to study the genetic structure and diversity of L. raniformis across Melbourne's urban fringe, and also screened four nuclear gene regions (POMC, RAG-1, Rhod and CRYBA1). The mtDNA and nuclear DNA sequences revealed low levels of genetic diversity throughout remnant populations of L. raniformis . However, one of the four regions studied, Cardinia, exhibited relatively high genetic diversity and several unique haplotypes, suggesting this region should be recognized as a separate Management Unit. We discuss the implications of these results for the conservation of L. raniformis in urbanizing landscapes, particularly the potential risks and benefits of translocation, which remains a contentious management approach for this species.

scholarly journals Phylogeography of post-Pleistocene population expansion in Dasyscyphella longistipitata (Leotiomycetes, Helotiales), an endemic fungal symbiont of Fagus crenata in Japan

MycoKeys ◽  
2020 ◽  
Vol 65 ◽  
pp. 1-24
Author(s):  
Jaime Gasca-Pineda ◽  
Patricia Velez ◽  
Tsuyoshi Hosoya
Keyword(s):  
Genetic Diversity ◽  
Environmental Changes ◽  
Continuous Distribution ◽  
Population Expansion ◽  
Fagus Crenata ◽  
High Genetic Diversity ◽  
Environmental Suitability ◽  
The Japanese Archipelago ◽  
The Last Glacial Maximum ◽  
The Last Glacial

During the Last Glacial Maximum (LGM), drastic environmental changes modified the topology of the Japanese Archipelago, impacting species distributions. An example is Fagus crenata, which has a present continuous distribution throughout Japan. However, by the end of the LGM it was restricted to southern refugia. Similarly, Dasyscyphella longistipitata (Leotiomycetes, Helotiales, Lachnaceae) occurs strictly on cupules of F. crenata, sharing currently an identical distribution. As the effects of the LGM remain poorly understood for saprobiotic microfungal species, herein we identified past structuring forces that shaped the current genetic diversity within D. longistipitata in relation to its host using a phylogeographic approach. We inferred present and past potential distributions through species distribution modeling, identifying environmental suitability areas in mid-southern Japan from which subsequent colonizations occurred. Our findings suggest that current high genetic diversity and lack of genetic structure within D. longistipitata are the result of recent multiple re-colonization events after the LGM.

scholarly journals Genetic diversity and population structure of Rhipicephalus sanguineus sensu lato across different regions of Colombia

2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Luisa Páez-Triana ◽  
Marina Muñoz ◽  
Giovanny Herrera ◽  
Darwin A. Moreno-Pérez ◽  
Gabriel A. Tafur-Gómez ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Dna Sequences ◽  
Phylogenetic Trees ◽  
Statistical Tests ◽  
Population Expansion ◽  
Rhipicephalus Sanguineus ◽  
Tick Population ◽  
12S Rdna ◽  
Haplotype Networks

Abstract Background There has been a long-standing debate over the taxonomic status of Rhipicephalus sanguineus sensu lato. Different studies worldwide have reported the occurrence of different well-defined lineages, in addition to Rhipicephalus sanguineus sensu stricto. To date, there are very few studies examining the diverse aspects of this tick in Colombia. We assessed the population structure and genetic diversity of R. sanguineus s.l. in eight departmental regions across Colombia. Methods A total of 170 ticks were collected from dogs in different departments of Colombia. All specimens were morphologically compatible with R. sanguineus s.l. and subjected to genetic analysis. DNA sequences were obtained for the 12S rDNA, cytochrome oxidase I (COI) and internal transcribed spacer 2 (ITS2) markers. A concatenated set of all mitochondrial markers was also constructed. Next, maximum likelihood phylogenetic trees were constructed using the sequences generated herein and sequences available in GenBank. Finally, we assessed different summary statistics and analysed population structure and divergence with Fst and Dxy and demographic changes with Tajima's D and Fu and Li’s statistical tests. Results Analysis of the 12S rDNA and COI revealed that all R. sanguineus s.l. specimens collected across different regions of Colombia clustered within the tropical lineage. Micro-geographical analyses showed that the tick population from Amazonas formed a distinct cluster separated from the other sequences, with moderate Fst and Dxy values. However, no signs of a robust population structure were found within the country. The results of Fu’s FS tests, together with the haplotype networks and diversity values, signal a possible population expansion of this tick species in Colombia. Conclusions Evidence provided herein supports the tropical lineage as the main circulating lineage in Colombia, exhibiting a general lack of genetic structure except for the Amazonas region. Graphical Abstract

scholarly journals Functional genetic diversity of domestic and wild American mink ( Neovison vison )

2020 ◽  
Vol 13 (10) ◽  
pp. 2610-2629
Author(s):  
Kimberley Y. Morris ◽  
Jeff Bowman ◽  
Albrecht Schulte‐Hostedde ◽  
Paul J. Wilson
Keyword(s):  
Genetic Diversity ◽  
American Mink ◽  
Neovison Vison

scholarly journals Genetic diversity and population structure of Alternaria species from tomato and potato in North Carolina and Wisconsin

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Tika B. Adhikari ◽  
Norman Muzhinji ◽  
Dennis Halterman ◽  
Frank J. Louws
Keyword(s):  
Genetic Diversity ◽  
North Carolina ◽  
Population Structure ◽  
Genetic Variation ◽  
Dna Sequences ◽  
Random Mating ◽  
Population Expansion ◽  
The United States ◽  
Population Subdivision ◽  
The Impact

AbstractEarly blight (EB) caused by Alternaria linariae or Alternaria solani and leaf blight (LB) caused by A. alternata are economically important diseases of tomato and potato. Little is known about the genetic diversity and population structure of these pathogens in the United States. A total of 214 isolates of A. alternata (n = 61), A. linariae (n = 96), and A. solani (n = 57) were collected from tomato and potato in North Carolina and Wisconsin and grouped into populations based on geographic locations and tomato varieties. We exploited 220 single nucleotide polymorphisms derived from DNA sequences of 10 microsatellite loci to analyse the population genetic structure between species and between populations within species and infer the mode of reproduction. High genetic variation and genotypic diversity were observed in all the populations analysed. The null hypothesis of the clonality test based on the index of association $$\left( {\overline{r}_{d} } \right)$$ r ¯ d was rejected, and equal frequencies of mating types under random mating were detected in some studied populations of Alternaria spp., suggesting that recombination can play an important role in the evolution of these pathogens. Most genetic differences were found between species, and the results showed three distinct genetic clusters corresponding to the three Alternaria spp. We found no evidence for clustering of geographic location populations or tomato variety populations. Analyses of molecular variance revealed high (> 85%) genetic variation within individuals in a population, confirming a lack of population subdivision within species. Alternaria linariae populations harboured more multilocus genotypes (MLGs) than A. alternata and A. solani populations and shared the same MLG between populations within a species, which was suggestive of gene flow and population expansion. Although both A. linariae and A. solani can cause EB on tomatoes and potatoes, these two species are genetically differentiated. Our results provide new insights into the evolution and structure of Alternaria spp. and can lead to new directions in optimizing management strategies to mitigate the impact of these pathogens on tomato and potato production in North Carolina and Wisconsin.

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