scholarly journals MCI Detection Using Kernel Eigen-Relative-Power Features of EEG Signals

Actuators ◽  
2021 ◽  
Vol 10 (7) ◽  
pp. 152
Author(s):  
Yu-Tsung Hsiao ◽  
Chia-Fen Tsai ◽  
Chien-Te Wu ◽  
Thanh-Tung Trinh ◽  
Chun-Ying Lee ◽  
...  
Keyword(s):  
Early Detection ◽  
Classification Accuracy ◽  
Spectral Power ◽  
Principal Component ◽  
Classification Performance ◽  
Kernel Principal Component Analysis ◽  
Support Vector ◽  
Relative Power ◽  
Linear Discriminant ◽  
Nonlinear Classifier

Classification between individuals with mild cognitive impairment (MCI) and healthy controls (HC) based on electroencephalography (EEG) has been considered a challenging task to be addressed for the purpose of its early detection. In this study, we proposed a novel EEG feature, the kernel eigen-relative-power (KERP) feature, for achieving high classification accuracy of MCI versus HC. First, we introduced the relative powers (RPs) between pairs of electrodes across 21 different subbands of 2-Hz width as the features, which have not yet been used in previous MCI-HC classification studies. Next, the Fisher’s class separability criterion was applied to determine the best electrode pairs (five electrodes) as well as the frequency subbands for extracting the most sensitive RP features. The kernel principal component analysis (kernel PCA) algorithm was further performed to extract a few more discriminating nonlinear principal components from the optimal RPs, and these components form a KERP feature vector. Results carried out on 51 participants (24 MCI and 27 HC) show that the newly introduced subband RP feature showed superior classification performance to commonly used spectral power features, including the band power, single-electrode relative power, and also the RP based on the conventional frequency bands. A high leave-one-participant-out cross-validation (LOPO-CV) classification accuracy 86.27% was achieved by the RP feature, using a simple linear discriminant analysis (LDA) classifier. Moreover, with the same classifier, the proposed KERP further improved the accuracy to 88.24%. Finally, cascading the KERP feature to a nonlinear classifier, the support vector machine (SVM), yields a high MCI-HC classification accuracy of 90.20% (sensitivity = 87.50% and specificity = 92.59%). The proposed method demonstrated a high accuracy and a high usability (only five electrodes are required), and therefore, has great potential to further develop an EEG-based computer-aided diagnosis system that can be applied for the early detection of MCI.

scholarly journals Identifying Individuals With Mild Cognitive Impairment Using Working Memory-Induced Intra-Subject Variability of Resting-State EEGs

2021 ◽  
Vol 15 ◽  
Author(s):  
Thanh-Tung Trinh ◽  
Chia-Fen Tsai ◽  
Yu-Tsung Hsiao ◽  
Chun-Ying Lee ◽  
Chien-Te Wu ◽  
...  
Keyword(s):  
Working Memory ◽  
Feature Extraction ◽  
Cognitive Impairment ◽  
Mild Cognitive Impairment ◽  
Early Detection ◽  
Resting State ◽  
Spectral Power ◽  
Classification Performance ◽  
Support Vector ◽  
Subject Variability

Individuals with mild cognitive impairment (MCI) are at high risk of developing into dementia (e. g., Alzheimer's disease, AD). A reliable and effective approach for early detection of MCI has become a critical challenge. Although compared with other costly or risky lab tests, electroencephalogram (EEG) seems to be an ideal alternative measure for early detection of MCI, searching for valid EEG features for classification between healthy controls (HCs) and individuals with MCI remains to be largely unexplored. Here, we design a novel feature extraction framework and propose that the spectral-power-based task-induced intra-subject variability extracted by this framework can be an encouraging candidate EEG feature for the early detection of MCI. In this framework, we extracted the task-induced intra-subject spectral power variability of resting-state EEGs (as measured by a between-run similarity) before and after participants performing cognitively exhausted working memory tasks as the candidate feature. The results from 74 participants (23 individuals with AD, 24 individuals with MCI, 27 HC) showed that the between-run similarity over the frontal and central scalp regions in the HC group is higher than that in the AD or MCI group. Furthermore, using a feature selection scheme and a support vector machine (SVM) classifier, the between-run similarity showed encouraging leave-one-participant-out cross-validation (LOPO-CV) classification performance for the classification between the MCI and HC (80.39%) groups and between the AD vs. HC groups (78%), and its classification performance is superior to other widely-used features such as spectral powers, coherence, and the complexity estimated by Katz's method extracted from single-run resting-state EEGs (a common approach in previous studies). The results based on LOPO-CV, therefore, suggest that the spectral-power-based task-induced intra-subject EEG variability extracted by the proposed feature extraction framework has the potential to serve as a neurophysiological feature for the early detection of MCI in individuals.

scholarly journals Object Classification Using Support Vector Machines with Kernel-based Data Preprocessing

2016 ◽  
Vol 21 (3) ◽  
pp. 45-53 ◽  
Author(s):  
Krzysztof Adamiak ◽  
Piotr Duch ◽  
Krzysztof Ślot
Keyword(s):  
Principal Component Analysis ◽  
Principal Component ◽  
Classification Problem ◽  
Component Analysis ◽  
Classification Performance ◽  
Kernel Principal Component Analysis ◽  
Support Vector ◽  
Class Differences ◽  
Lower Variability ◽  
Domain Transformation

Abstract The paper explores possibility of improving Support Vector Machine-based classification performance by introducing an input data dimensionality reduction step. Feature extraction by means of two different kernel methods are considered: kernel Principal Component Analysis (kPCA) and Supervised kernel Principal Component Analysis. It is hypothesized that input domain transformation, aimed at emphasizing between-class differences, would facilitate classification problem. Experiments, performed on three different datasets show that one can benefit from the proposed approach, as it provides lower variability in classification performance at similar, high recognition rates.

scholarly journals Detection of Water Stress in Khasi Mandarin Orange Plants from Volatile Organic Compound Emission Profile Implementing Electronic Nose

2019 ◽  
Vol 9 (1) ◽  
pp. 133-137 ◽  
Keyword(s):  
Water Stress ◽  
Electronic Nose ◽  
Principal Component ◽  
Kernel Principal Component Analysis ◽  
Support Vector ◽  
Gene Expressions ◽  
Volatile Organic Compound Emission ◽  
Linear Discriminant ◽  
Volatile Organic ◽  
Mandarin Orange

Plants in the absence of an innate immune system like animals and being immobile are regularly exposed to a host of stresses, ranging from biotic to abiotic stresses. In response to these, plants have developed a complicated response system like reprogramming gene expressions and emission of secondary metabolites as volatile organic compounds (VOCs) by its various tissues like roots, stems, leaves etc. These VOCs can be used as biomarkers for inspecting plants’ in situ health status. This paper address the usefulness of electronic nose (e-nose) system to sense the VOCs emitted by plants’ leaves to detect the stresses in it. Standard commercial electronic nose (e-nose) system Alfa Mos Fox 3000 has been used here to identify the stressed and non-stressed plants. Fifteen Mandarin orange plants were considered for the study and were subdivided into three categories. Each one was subjected to a different level of water stress. Leaf samples were collected for e-nose analyses from each plant of all three categories on the 15th day and 30th day of induction of water stresses. Dimensionality reduction techniques like kernel Principal Component Analysis (kPCA), Linear Discriminant Analysis (LDA) and classification algorithms like Support Vector Machines (SVC) and Multi-Layer Perceptron Classifier (MLPC) have been used to classify the three categories of plants. The scores obtained from these analyses reveals the feasibility of using an e nose system in discriminating plants based on the status of water stress in them. This paper analyses the applicability of e nose system in stress diagnosis of agricultural and horticultural crops, which would significantly help in controlling the irrigation regime.

scholarly journals Comparison of Sensory Qualities in Eggs from Three Breeds Based on Electronic Sensory Evaluations

Foods ◽  
2021 ◽  
Vol 10 (9) ◽  
pp. 1984
Author(s):  
Xiaoguang Dong ◽  
Libing Gao ◽  
Haijun Zhang ◽  
Jing Wang ◽  
Kai Qiu ◽  
...  
Keyword(s):  
Electronic Nose ◽  
Classification Accuracy ◽  
Laying Hens ◽  
Electronic Tongue ◽  
Principal Component ◽  
Support Vector ◽  
K Nearest Neighbor ◽  
Linear Discriminant ◽  
Sensory Qualities ◽  
Egg Yolks

The present study was conducted on three commercial laying breeder strains to evaluate differences of sensory qualities, including texture, smell, and taste parameters. A total of 140 eggs for each breed were acquired from Beinong No.2 (B) laying hens, Hy-Line Brown (H) laying hens, and Wuhei (W) laying hens. Sensory qualities of egg yolks and albumen from three breeds were detected and discriminated based on different algorithms. Texture profile analysis (TPA) showed that the eggs from three breeds had no differences in hardness, adhesiveness, springiness, and chewiness other than cohesiveness. The smell profiles measured by electronic nose illustrated that differences existed in all 10 sensors for albumen and 8 sensors for yolks. The taste profiles measured by electronic tongue found that the main difference of egg yolks and albumen existed in bitterness and astringency. Principal component analysis (PCA) successfully showed grouping of three breeds based on electronic nose data and failed in grouping based on electronic tongue data. Based on electronic nose data, linear discriminant analysis (LDA), fine k-nearest neighbor (KNN) and linear support vector machine (SVM) were performed to discriminate yolks, albumen, and the whole eggs with 100% classification accuracy. While based on electronic tongue data, the best classification accuracy was 96.7% for yolks by LDA and fine tree, 88.9% for albumen by LDA, and 87.5% for the whole eggs by fine KNN. The experiment results showed that three breeds’ eggs had main differences in smells and could be successfully discriminated by LDA, fine KNN, and linear SVM algorithms based on electronic nose.

scholarly journals A model for spectroscopic food sample analysis using data sonification

2021 ◽  
Author(s):  
Hsein Kew
Keyword(s):  
Dimensionality Reduction ◽  
Classification Accuracy ◽  
Reduction Method ◽  
Real Life ◽  
Principal Component ◽  
Relevant Information ◽  
Analysis Model ◽  
Linear Discriminant ◽  
Audio Output ◽  
Dimensionality Reduction Method

AbstractIn this paper, we propose a method to generate an audio output based on spectroscopy data in order to discriminate two classes of data, based on the features of our spectral dataset. To do this, we first perform spectral pre-processing, and then extract features, followed by machine learning, for dimensionality reduction. The features are then mapped to the parameters of a sound synthesiser, as part of the audio processing, so as to generate audio samples in order to compute statistical results and identify important descriptors for the classification of the dataset. To optimise the process, we compare Amplitude Modulation (AM) and Frequency Modulation (FM) synthesis, as applied to two real-life datasets to evaluate the performance of sonification as a method for discriminating data. FM synthesis provides a higher subjective classification accuracy as compared with to AM synthesis. We then further compare the dimensionality reduction method of Principal Component Analysis (PCA) and Linear Discriminant Analysis in order to optimise our sonification algorithm. The results of classification accuracy using FM synthesis as the sound synthesiser and PCA as the dimensionality reduction method yields a mean classification accuracies of 93.81% and 88.57% for the coffee dataset and the fruit puree dataset respectively, and indicate that this spectroscopic analysis model is able to provide relevant information on the spectral data, and most importantly, is able to discriminate accurately between the two spectra and thus provides a complementary tool to supplement current methods.

scholarly journals Raman Spectral Signatures of Serum-Derived Extracellular Vesicle-Enriched Isolates May Support the Diagnosis of CNS Tumors

Cancers ◽  
2021 ◽  
Vol 13 (6) ◽  
pp. 1407
Author(s):  
Matyas Bukva ◽  
Gabriella Dobra ◽  
Juan Gomez-Perez ◽  
Krisztian Koos ◽  
Maria Harmati ◽  
...  
Keyword(s):  
Lumbar Disc ◽  
Area Under The Curve ◽  
Principal Component ◽  
Extracellular Vesicle ◽  
Classification Performance ◽  
Cns Tumors ◽  
Clinical Samples ◽  
Support Vector ◽  
Serum Samples ◽  
Raman Spectroscopic

Investigating the molecular composition of small extracellular vesicles (sEVs) for tumor diagnostic purposes is becoming increasingly popular, especially for diseases for which diagnosis is challenging, such as central nervous system (CNS) malignancies. Thorough examination of the molecular content of sEVs by Raman spectroscopy is a promising but hitherto barely explored approach for these tumor types. We attempt to reveal the potential role of serum-derived sEVs in diagnosing CNS tumors through Raman spectroscopic analyses using a relevant number of clinical samples. A total of 138 serum samples were obtained from four patient groups (glioblastoma multiforme, non-small-cell lung cancer brain metastasis, meningioma and lumbar disc herniation as control). After isolation, characterization and Raman spectroscopic assessment of sEVs, the Principal Component Analysis–Support Vector Machine (PCA–SVM) algorithm was performed on the Raman spectra for pairwise classifications. Classification accuracy (CA), sensitivity, specificity and the Area Under the Curve (AUC) value derived from Receiver Operating Characteristic (ROC) analyses were used to evaluate the performance of classification. The groups compared were distinguishable with 82.9–92.5% CA, 80–95% sensitivity and 80–90% specificity. AUC scores in the range of 0.82–0.9 suggest excellent and outstanding classification performance. Our results support that Raman spectroscopic analysis of sEV-enriched isolates from serum is a promising method that could be further developed in order to be applicable in the diagnosis of CNS tumors.

Deep Learning Associated with Laser-Induced Breakdown Spectroscopy (LIBS) for the Prediction of Lead in Soil

2019 ◽  
Vol 73 (5) ◽  
pp. 565-573 ◽  
Author(s):  
Yun Zhao ◽  
Mahamed Lamine Guindo ◽  
Xing Xu ◽  
Miao Sun ◽  
Jiyu Peng ◽  
...  
Keyword(s):  
Deep Learning ◽  
Confusion Matrix ◽  
Principal Component ◽  
Classification Performance ◽  
Soil Samples ◽  
Laser Induced Breakdown Spectroscopy ◽  
Support Vector ◽  
Breakdown Spectroscopy ◽  
Laser Induced Breakdown ◽  
Different Levels

In this study, a method based on laser-induced breakdown spectroscopy (LIBS) was developed to detect soil contaminated with Pb. Different levels of Pb were added to soil samples in which tobacco was planted over a period of two to four weeks. Principal component analysis and deep learning with a deep belief network (DBN) were implemented to classify the LIBS data. The robustness of the method was verified through a comparison with the results of a support vector machine and partial least squares discriminant analysis. A confusion matrix of the different algorithms shows that the DBN achieved satisfactory classification performance on all samples of contaminated soil. In terms of classification, the proposed method performed better on samples contaminated for four weeks than on those contaminated for two weeks. The results show that LIBS can be used with deep learning for the detection of heavy metals in soil.

scholarly journals Multiscale Supervised Classification of Point Clouds with Urban and Forest Applications

Sensors ◽  
2019 ◽  
Vol 19 (20) ◽  
pp. 4523 ◽  
Author(s):  
Carlos Cabo ◽  
Celestino Ordóñez ◽  
Fernando Sáchez-Lasheras ◽  
Javier Roca-Pardiñas ◽  
and Javier de Cos-Juez
Keyword(s):  
Random Forest ◽  
Laser Scanning ◽  
Supervised Classification ◽  
Computing Time ◽  
Principal Component ◽  
Point Clouds ◽  
Support Vector ◽  
Linear Discriminant ◽  
Vector Machines ◽  
Input Variables

We analyze the utility of multiscale supervised classification algorithms for object detection and extraction from laser scanning or photogrammetric point clouds. Only the geometric information (the point coordinates) was considered, thus making the method independent of the systems used to collect the data. A maximum of five features (input variables) was used, four of them related to the eigenvalues obtained from a principal component analysis (PCA). PCA was carried out at six scales, defined by the diameter of a sphere around each observation. Four multiclass supervised classification models were tested (linear discriminant analysis, logistic regression, support vector machines, and random forest) in two different scenarios, urban and forest, formed by artificial and natural objects, respectively. The results obtained were accurate (overall accuracy over 80% for the urban dataset, and over 93% for the forest dataset), in the range of the best results found in the literature, regardless of the classification method. For both datasets, the random forest algorithm provided the best solution/results when discrimination capacity, computing time, and the ability to estimate the relative importance of each variable are considered together.

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