scholarly journals Minor Effects of 11 Dof Family Genes Contribute to the Missing Heritability of Heading Date in Rice (Oryza sativa L.)

2020 ◽  
Vol 10 ◽  
Author(s):  
Yong Huang ◽  
Zhongmin Han ◽  
Niannian Cheng ◽  
Meifang Luo ◽  
Xufeng Bai ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Oryza Sativa L ◽  
Heading Date ◽  
Missing Heritability

Diallel analysis of heading date in rice (Oryza sativa L.)

1980 ◽  
Vol 57 (1) ◽  
pp. 43-47 ◽  
Author(s):  
S. L. Dwivedi ◽  
K. N. Rai ◽  
R. B. Singh
Keyword(s):  
Oryza Sativa ◽  
Oryza Sativa L ◽  
Heading Date ◽  
Diallel Analysis

Fine Mapping of qHD8-1, a QTL Controlling the Heading Date, to a 26-kb DNA Fragment in Rice (Oryza sativa L.)

2011 ◽  
Vol 54 (3) ◽  
pp. 190-198
Author(s):  
Chengguo Pei ◽  
Xu Liu ◽  
Wenying Wang ◽  
Hanfeng Ding ◽  
Mingsong Jiang ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Fine Mapping ◽  
Oryza Sativa L ◽  
Heading Date ◽  
Dna Fragment

scholarly journals Fine mapping of qHd1, a minor heading date QTL with pleiotropism for yield traits in rice (Oryza sativa L.)

2014 ◽  
Vol 127 (11) ◽  
pp. 2515-2524 ◽  
Author(s):  
Jun-Yu Chen ◽  
Liang Guo ◽  
Huan Ma ◽  
Yu-Yu Chen ◽  
Hong-Wei Zhang ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Fine Mapping ◽  
Oryza Sativa L ◽  
Heading Date ◽  
Yield Traits ◽  
A Minor

scholarly journals Genome-wide association analysis of panicle exsertion and uppermost internode in rice (Oryza sativa L.)

Rice ◽  
2019 ◽  
Vol 12 (1) ◽  
Author(s):  
Chengfang Zhan ◽  
Jiaxiao Hu ◽  
Qiao Pang ◽  
Bin Yang ◽  
Yanhao Cheng ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Oryza Sativa L ◽  
Heading Date ◽  
Grain Filling ◽  
Genome Wide Association ◽  
Rice Breeding ◽  
Gene Encoding ◽  
P450 Monooxygenase ◽  
Genome Wide ◽  
Uppermost Internode

Abstract Background Rice (Oryza sativa L.) yield is seriously influenced by panicle exsertion (PE) and the uppermost internode (UI) through panicle enclosure or energy transport during grain-filling stages. We evaluated the traits of PE and UI of 205 rice accessions in two independent environments and performed genome-wide association (GWAS) to explore the key genes controlling PE and UI, which could be used to improve panicle enclosure in rice breeding. Results In this study, extensive genetic variation was found in both PE and UI among the 205 rice accessions, and 10.7% of accessions had panicle enclosure (PE/UI ≤ 0). Correlation analysis revealed that PE was significantly positively correlated with 1000-grain weight (1000-GW) but negatively correlated with heading date (HD), and UI was significantly positively correlated with HD but no significantly correlated with 1000-GW. A total of 22 and 24 quantitative trait loci (QTLs) were identified for PE and UI using GWAS, respectively. Eight loci for PE and nine loci for UI were simultaneously detected both in 2015 and in 2016, seven loci had adjacent physical positions between PE and UI, and ten loci for PE and seven loci for UI were located in previously reported QTLs. Further, we identified the CYP734A4 gene, encoding a cytochrome P450 monooxygenase, and the OsLIS-L1 gene, encoding a lissencephaly type-1-like protein, as causal genes for qPE14 and qUI14, and for qPE19, respectively. PE and UI were both significantly shorter in these two genes’ mutants than in WT. Allelic Hap.1/2/4 of CYP734A4 and Hap.1/2/4 of OsLIS-L1 increased PE, UI, PE/UI, and 1000-GW, but Hap.3 of CYP734A4 and Hap.3 of OsLIS-L1 reduced them. In addition, six candidate genes were also detected for four key novel loci, qPE16, qPE21, qUI1, and qUI18, that seemed to be related to PE and UI. Conclusions Our results provide new information on the genetic architecture of PE and UI in rice, confirming that the CYP734A4 and OsLIS-L1 genes participate in PE and UI regulation, which could improve our understanding of the regulatory mechanism of PE and UI for rice breeding in the future.

Fine Mapping of qHD4-1, a QTL Controlling the Heading Date, to a 20.7-kb DNA Fragment in Rice (Oryza sativa L.)

2010 ◽  
Vol 29 (3) ◽  
pp. 702-713 ◽  
Author(s):  
Binbin Wang ◽  
Changxiang Zhu ◽  
Xu Liu ◽  
Wenying Wang ◽  
Hanfeng Ding ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Fine Mapping ◽  
Oryza Sativa L ◽  
Heading Date ◽  
Dna Fragment
Sign in / Sign up

Export Citation Format

Share Document