scholarly journals Field-Based High-Throughput Phenotyping for Maize Plant Using 3D LiDAR Point Cloud Generated With a “Phenomobile”

2019 ◽  
Vol 10 ◽  
Author(s):  
Quan Qiu ◽  
Na Sun ◽  
He Bai ◽  
Ning Wang ◽  
Zhengqiang Fan ◽  
...  
Keyword(s):  
High Throughput ◽  
Point Cloud ◽  
Maize Plant ◽  
High Throughput Phenotyping ◽  
3D Lidar

scholarly journals High-Throughput Phenotyping Analysis of Potted Soybean Plants Using Colorized Depth Images Based on A Proximal Platform

2019 ◽  
Vol 11 (9) ◽  
pp. 1085 ◽  
Author(s):  
Xiaodan Ma ◽  
Kexin Zhu ◽  
Haiou Guan ◽  
Jiarui Feng ◽  
Song Yu ◽  
...  
Keyword(s):  
Plant Height ◽  
High Throughput ◽  
Point Cloud ◽  
Canopy Structure ◽  
Canopy Development ◽  
Depth Images ◽  
Color Indices ◽  
High Throughput Phenotyping ◽  
Soybean Canopy ◽  
Soybean Plants

Canopy color and structure can strongly reflect plant functions. Color characteristics and plant height as well as canopy breadth are important aspects of the canopy phenotype of soybean plants. High-throughput phenotyping systems with imaging capabilities providing color and depth information can rapidly acquire data of soybean plants, making it possible to quantify and monitor soybean canopy development. The goal of this study was to develop a 3D imaging approach to quantitatively analyze soybean canopy development under natural light conditions. Thus, a Kinect sensor-based high-throughput phenotyping (HTP) platform was developed for soybean plant phenotyping. To calculate color traits accurately, the distortion phenomenon of color images was first registered in accordance with the principle of three primary colors and color constancy. Then, the registered color images were applied to depth images for the reconstruction of the colorized three-dimensional canopy structure. Furthermore, the 3D point cloud of soybean canopies was extracted from the background according to adjusted threshold, and each area of individual potted soybean plants in the depth images was segmented for the calculation of phenotypic traits. Finally, color indices, plant height and canopy breadth were assessed based on 3D point cloud of soybean canopies. The results showed that the maximum error of registration for the R, G, and B bands in the dataset was 1.26%, 1.09%, and 0.75%, respectively. Correlation analysis between the sensors and manual measurements yielded R2 values of 0.99, 0.89, and 0.89 for plant height, canopy breadth in the west-east (W–E) direction, and canopy breadth in the north-south (N–S) direction, and R2 values of 0.82, 0.79, and 0.80 for color indices h, s, and i, respectively. Given these results, the proposed approaches provide new opportunities for the identification of the quantitative traits that control canopy structure in genetic/genomic studies or for soybean yield prediction in breeding programs.

scholarly journals High-Throughput Phenotyping and QTL Mapping Reveals the Genetic Architecture of Maize Plant Growth

2017 ◽  
Vol 173 (3) ◽  
pp. 1554-1564 ◽  
Author(s):  
Xuehai Zhang ◽  
Chenglong Huang ◽  
Di Wu ◽  
Feng Qiao ◽  
Wenqiang Li ◽  
...  
Keyword(s):  
Plant Growth ◽  
Qtl Mapping ◽  
High Throughput ◽  
Genetic Architecture ◽  
Maize Plant ◽  
High Throughput Phenotyping

scholarly journals Integrated High-Throughput Phenotyping with High Resolution Multispectral, Hyperspectral and 3D Point Cloud Techniques for Screening Wheat Genotypes on Sodic Soils

Proceedings ◽  
2020 ◽  
Vol 36 (1) ◽  
pp. 206
Author(s):  
Malini Roy Choudhury ◽  
Jack Christopher ◽  
Armando Apan ◽  
Scott Chapman ◽  
Neal Menzies ◽  
...  
Keyword(s):  
Leaf Area ◽  
High Throughput ◽  
Point Cloud ◽  
Vegetation Index ◽  
Partial Least Square ◽  
3D Point Cloud ◽  
Sodic Soils ◽  
Area Index ◽  
Wheat Genotypes ◽  
High Throughput Phenotyping

Wheat production in southern Queensland, Australia is adversely affected by soil sodicity. Crop phenotyping could be useful to improve productivity in such soils. This research focused on adapting high-throughput phenotyping of crop biophysical attributes to monitor crop health, nutrient deficiencies and plant moisture availability. We conducted an aerial and ground-based campaign during several wheat growing stages to capture crop information for 18 wheat genotypes at a moderately sodic site near Goondiwindi in southern Queensland. Three techniques were employed (multispectral, hyperspectral, and 3D point cloud) to monitor crop characteristics and predict biomass and yield. Spectral information and vegetation indices (VI) such as, normalized different vegetation index (NDVI), modified soil adjusted vegetation index (MSAVI), and leaf area index (LAI) were derived from multispectral imagery and compared with ground-based agronomic data for biomass, leaf area, and yield. Significant correlations were observed between NDVI and yield (R2 = 0.81), LAI (R2 = 0.74), and biomass (R2 = 0.65). Partial least square regression (PLS-R) modelling using hyperspectral spectroscopy data provided crop yield predictions that correlated significantly with observed yield (R2 = 0.65). The 3D point cloud technique was effective with comparison to in field manual measurements of crop architectural traits height and foliage cover (e.g., for height R2 = 0.73). For, this study multispectral techniques showed a greater potential to predict biomass and yield of wheat genotypes under moderately sodic soils than hyperspectral and 3D point cloud techniques. In future, the genotypes will be tested under more severely sodic soils to monitor crop performance and predicting yield.

Towards high-throughput phenotyping of complex patterned behaviors: Lessons from mouse self-grooming

2011 ◽  
Author(s):  
E. Kyzar ◽  
S. Gaikwad ◽  
M. Pham ◽  
J. Green ◽  
A. Roth ◽  
...  
Keyword(s):  
High Throughput ◽  
High Throughput Phenotyping

scholarly journals Real-time Track Obstacle Detection from 3D LIDAR Point Cloud

2021 ◽  
Vol 1910 (1) ◽  
pp. 012002
Author(s):  
Chao He ◽  
Jiayuan Gong ◽  
Yahui Yang ◽  
Dong Bi ◽  
Jianpin Lan ◽  
...  
Keyword(s):  
Real Time ◽  
Point Cloud ◽  
Obstacle Detection ◽  
3D Lidar

scholarly journals High-throughput phenotyping: breaking through the bottleneck in future crop breeding

2021 ◽  
Author(s):  
Peng Song ◽  
Jinglu Wang ◽  
Xinyu Guo ◽  
Wanneng Yang ◽  
Chunjiang Zhao
Keyword(s):  
High Throughput ◽  
Crop Breeding ◽  
High Throughput Phenotyping

scholarly journals High-Throughput Phenotyping Methods for Breeding Drought-Tolerant Crops

2021 ◽  
Vol 22 (15) ◽  
pp. 8266
Author(s):  
Minsu Kim ◽  
Chaewon Lee ◽  
Subin Hong ◽  
Song Lim Kim ◽  
Jeong-Ho Baek ◽  
...  
Keyword(s):  
Drought Stress ◽  
High Throughput ◽  
Large Scale ◽  
Crop Yields ◽  
Plant Traits ◽  
Rapid Development ◽  
Plant Responses ◽  
Phenotypic Data ◽  
Agricultural Technologies ◽  
High Throughput Phenotyping

Drought is a main factor limiting crop yields. Modern agricultural technologies such as irrigation systems, ground mulching, and rainwater storage can prevent drought, but these are only temporary solutions. Understanding the physiological, biochemical, and molecular reactions of plants to drought stress is therefore urgent. The recent rapid development of genomics tools has led to an increasing interest in phenomics, i.e., the study of phenotypic plant traits. Among phenomic strategies, high-throughput phenotyping (HTP) is attracting increasing attention as a way to address the bottlenecks of genomic and phenomic studies. HTP provides researchers a non-destructive and non-invasive method yet accurate in analyzing large-scale phenotypic data. This review describes plant responses to drought stress and introduces HTP methods that can detect changes in plant phenotypes in response to drought.

scholarly journals High-throughput phenotyping of two plant-size traits of Eucalyptus species using neural networks

2021 ◽  
Author(s):  
Marcus Vinicius Vieira Borges ◽  
Janielle de Oliveira Garcia ◽  
Tays Silva Batista ◽  
Alexsandra Nogueira Martins Silva ◽  
Fabio Henrique Rojo Baio ◽  
...  
Keyword(s):  
Neural Networks ◽  
High Throughput ◽  
Mean Squared Error ◽  
Vegetation Indices ◽  
Plant Size ◽  
Eucalyptus Species ◽  
Forest Inventories ◽  
Spectral Bands ◽  
High Throughput Phenotyping ◽  
Input Variables

AbstractIn forest modeling to estimate the volume of wood, artificial intelligence has been shown to be quite efficient, especially using artificial neural networks (ANNs). Here we tested whether diameter at breast height (DBH) and the total plant height (Ht) of eucalyptus can be predicted at the stand level using spectral bands measured by an unmanned aerial vehicle (UAV) multispectral sensor and vegetation indices. To do so, using the data obtained by the UAV as input variables, we tested different configurations (number of hidden layers and number of neurons in each layer) of ANNs for predicting DBH and Ht at stand level for different Eucalyptus species. The experimental design was randomized blocks with four replicates, with 20 trees in each experimental plot. The treatments comprised five Eucalyptus species (E. camaldulensis, E. uroplylla, E. saligna, E. grandis, and E. urograndis) and Corymbria citriodora. DBH and Ht for each plot at the stand level were measured seven times in separate overflights by the UAV, so that the multispectral sensor could obtain spectral bands to calculate vegetation indices (VIs). ANNs were then constructed using spectral bands and VIs as input layers, in addition to the categorical variable (species), to predict DBH and Ht at the stand level simultaneously. This report represents one of the first applications of high-throughput phenotyping for plant size traits in Eucalyptus species. In general, ANNs containing three hidden layers gave better statistical performance (higher estimated r, lower estimated root mean squared error–RMSE) due to their greater capacity for self-learning. Among these ANNs, the best contained eight neurons in the first layer, seven in the second, and five in the third (8 − 7 − 5). The results reported here reveal the potential of using the generated models to perform accurate forest inventories based on spectral bands and VIs obtained with a UAV multispectral sensor and ANNs, reducing labor and time.

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