scholarly journals De novo Transcriptome Characterization of Rhodomyrtus tomentosa Leaves and Identification of Genes Involved in α/β-Pinene and β-Caryophyllene Biosynthesis

2018 ◽  
Vol 9 ◽  
Author(s):  
Si-Mei He ◽  
Xiao Wang ◽  
Sheng-Chao Yang ◽  
Yang Dong ◽  
Qi-Ming Zhao ◽  
...  
Keyword(s):  
De Novo ◽  
De Novo Transcriptome ◽  
Rhodomyrtus Tomentosa

scholarly journals De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity

BMC Genomics ◽  
2013 ◽  
Vol 14 (1) ◽  
pp. 41 ◽  
Author(s):  
Luca Venturini ◽  
Alberto Ferrarini ◽  
Sara Zenoni ◽  
Giovanni Battista Tornielli ◽  
Marianna Fasoli ◽  
...  
Keyword(s):  
Vitis Vinifera ◽  
De Novo ◽  
De Novo Transcriptome ◽  
Varietal Diversity

De novo transcriptome characterization of Lilium ‘Sorbonne’ and key enzymes related to the flavonoid biosynthesis

2014 ◽  
Vol 290 (1) ◽  
pp. 399-412 ◽  
Author(s):  
Ming-fang Zhang ◽  
Ling-min Jiang ◽  
Dong-mei Zhang ◽  
Gui-xia Jia
Keyword(s):  
De Novo ◽  
Flavonoid Biosynthesis ◽  
De Novo Transcriptome ◽  
Key Enzymes

scholarly journals Characterization of the CAZy Repertoire from the Marine-Derived Fungus Stemphylium lucomagnoense in Relation to Saline Conditions

Marine Drugs ◽  
2020 ◽  
Vol 18 (9) ◽  
pp. 461 ◽  
Author(s):  
Wissal Ben Ali ◽  
David Navarro ◽  
Abhishek Kumar ◽  
Elodie Drula ◽  
Annick Turbé-Doan ◽  
...  
Keyword(s):  
Transcriptome Sequencing ◽  
Extracellular Enzymes ◽  
De Novo ◽  
Plant Biomass ◽  
Xylanase Activity ◽  
Biomass Composition ◽  
De Novo Transcriptome ◽  
Proteomic Approach ◽  
De Novo Transcriptome Sequencing

Even if the ocean represents a large part of Earth’s surface, only a few studies describe marine-derived fungi compared to their terrestrial homologues. In this ecosystem, marine-derived fungi have had to adapt to the salinity and to the plant biomass composition. This articles studies the growth of five marine isolates and the tuning of lignocellulolytic activities under different conditions, including the salinity. A de novo transcriptome sequencing and assembly were used in combination with a proteomic approach to characterize the Carbohydrate Active Enzymes (CAZy) repertoire of one of these strains. Following these approaches, Stemphylium lucomagnoense was selected for its adapted growth on xylan in saline conditions, its high xylanase activity, and its improved laccase activities in seagrass-containing cultures with salt. De novo transcriptome sequencing and assembly indicated the presence of 51 putative lignocellulolytic enzymes. Its secretome composition was studied in detail when the fungus was grown on either a terrestrial or a marine substrate, under saline and non-saline conditions. Proteomic analysis of the four S. lucomagnoense secretomes revealed a minimal suite of extracellular enzymes for plant biomass degradation and highlighted potential enzyme targets to be further studied for their adaptation to salts and for potential biotechnological applications.

Characterization of the secretome of Plasmopara viticola by de novo transcriptome analysis

2015 ◽  
Vol 91 ◽  
pp. 1-10 ◽  
Author(s):  
Ling Yin ◽  
Xinlong Li ◽  
Jiang Xiang ◽  
Junjie Qu ◽  
Yali Zhang ◽  
...  
Keyword(s):  
Transcriptome Analysis ◽  
De Novo ◽  
Plasmopara Viticola ◽  
De Novo Transcriptome
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