scholarly journals Genome-Wide Identification and Expression Profiling of ATP-Binding Cassette (ABC) Transporter Gene Family in Pineapple (Ananas comosus (L.) Merr.) Reveal the Role of AcABCG38 in Pollen Development

2017 ◽  
Vol 8 ◽  
Author(s):  
Piaojuan Chen ◽  
Yi Li ◽  
Lihua Zhao ◽  
Zhimin Hou ◽  
Maokai Yan ◽  
...  
Keyword(s):  
Gene Family ◽  
Abc Transporter ◽  
Expression Profiling ◽  
Pollen Development ◽  
Ananas Comosus ◽  
Atp Binding ◽  
Transporter Gene ◽  
Genome Wide ◽  
Atp Binding Cassette

scholarly journals In Silico Genome-Wide Analysis of the ATP-Binding Cassette Transporter Gene Family in Soybean (Glycine max L.) and Their Expression Profiling

2019 ◽  
Vol 2019 ◽  
pp. 1-14 ◽  
Author(s):  
Awdhesh Kumar Mishra ◽  
Jinhee Choi ◽  
Muhammad Fazle Rabbee ◽  
Kwang-Hyun Baek
Keyword(s):  
Gene Family ◽  
Abc Transporter ◽  
Abc Transporters ◽  
In Silico ◽  
Gene Families ◽  
Protein Domain ◽  
Atp Binding ◽  
Transporter Gene ◽  
Genome Wide ◽  
Atp Binding Cassette

ATP-binding cassette (ABC) transporters constitute one of the largest gene families in all living organisms, most of which mediate transport across biological membranes by hydrolyzing ATP. However, detailed studies of ABC transporter genes in the important oil crop, soybean, are still lacking. In the present study, we carried out genome-wide identification and phylogenetic and transcriptional analyses of the ABC gene family in G. max. A total of 261 G. max ABC (GmABCs) genes were identified and unevenly localized onto 20 chromosomes. Referring to protein-domain orientation and phylogeny, the GmABC family could be classified into eight (ABCA-ABCG and ABCI) subfamilies and ABCG were the most abundantly present. Further, investigation of whole genome duplication (WGD) signifies the role of segmental duplication in the expansion of the ABC transporter gene family in soybean. The Ka/Ks ratio indicates that several duplicated genes are governed by intense purifying selection during evolution. In addition, in silico expression analysis based on RNA-sequence using publicly available database revealed that ABC transporters are differentially expressed in tissues and developmental stages and in dehydration. Overall, we provide an extensive overview of the GmABC transporter gene family and it promises the primary basis for the study in development and response to dehydration tolerance.

Genome-wide analysis of the ATP-binding cassette (ABC) transporter gene family in the silkworm, Bombyx mori

2012 ◽  
Vol 39 (7) ◽  
pp. 7281-7291 ◽  
Author(s):  
Xiaodong Xie ◽  
Tingcai Cheng ◽  
Genhong Wang ◽  
Jun Duan ◽  
Weihuan Niu ◽  
...  
Keyword(s):  
Gene Family ◽  
Bombyx Mori ◽  
Abc Transporter ◽  
Atp Binding ◽  
Transporter Gene ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Silkworm Bombyx Mori ◽  
Atp Binding Cassette

scholarly journals Genome-wide analysis of the ATP-binding cassette (ABC) transporter gene family in sea lamprey and Japanese lamprey

BMC Genomics ◽  
2015 ◽  
Vol 16 (1) ◽  
Author(s):  
Jianfeng Ren ◽  
Yu-Wen Chung-Davidson ◽  
Chu-Yin Yeh ◽  
Camille Scott ◽  
Titus Brown ◽  
...  
Keyword(s):  
Gene Family ◽  
Abc Transporter ◽  
Sea Lamprey ◽  
Atp Binding ◽  
Transporter Gene ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Atp Binding Cassette

scholarly journals Functional analysis of the ATP-binding cassette (ABC) transporter gene family of Tribolium castaneum

BMC Genomics ◽  
2013 ◽  
Vol 14 (1) ◽  
pp. 6 ◽  
Author(s):  
Gunnar Broehan ◽  
Tobias Kroeger ◽  
Marcé Lorenzen ◽  
Hans Merzendorfer
Keyword(s):  
Functional Analysis ◽  
Gene Family ◽  
Abc Transporter ◽  
Tribolium Castaneum ◽  
Atp Binding ◽  
Transporter Gene ◽  
Atp Binding Cassette
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