scholarly journals Genome-Wide Identification, Evolution, and Co-expression Network Analysis of Mitogen-Activated Protein Kinase Kinase Kinases in Brachypodium distachyon

2016 ◽  
Vol 7 ◽  
Author(s):  
Kewei Feng ◽  
Fuyan Liu ◽  
Jinwei Zou ◽  
Guangwei Xing ◽  
Pingchuan Deng ◽  
...  
Keyword(s):  
Protein Kinase ◽  
Network Analysis ◽  
Brachypodium Distachyon ◽  
Mitogen Activated Protein Kinase ◽  
Genome Wide ◽  
Mitogen Activated Protein ◽  
Protein Kinase Kinase

scholarly journals In-silico genome wide analysis of Mitogen activated protein kinase kinase kinase gene family in C. sinensis

PLoS ONE ◽  
2021 ◽  
Vol 16 (11) ◽  
pp. e0258657
Author(s):  
Abhirup Paul ◽  
Anurag P. Srivastava ◽  
Shreya Subrahmanya ◽  
Guoxin Shen ◽  
Neelam Mishra
Keyword(s):  
Protein Kinase ◽  
Regulatory Elements ◽  
Stress Factors ◽  
Mitogen Activated Protein Kinase ◽  
Functional Study ◽  
Functional Domain ◽  
Genome Wide ◽  
A Genome ◽  
Mitogen Activated Protein ◽  
Protein Kinase Kinase

Mitogen activated protein kinase kinase kinase (MAPKKK) form the upstream component of MAPK cascade. It is well characterized in several plants such as Arabidopsis and rice however the knowledge about MAPKKKs in tea plant is largely unknown. In the present study, MAPKKK genes of tea were obtained through a genome wide search using Arabidopsis thaliana as the reference genome. Among 59 candidate MAPKKK genes in tea, 17 genes were MEKK-like, 31 genes were Raf-like and 11 genes were ZIK- like. Additionally, phylogenetic relationships were established along with structural analysis, which includes gene structure, its location as well as conserved motifs, cis-acting regulatory elements and functional domain signatures that were systematically examined. Also, on the basis of one orthologous gene found between tea and Arabidopsis, functional interaction was carried out in C. sinensis based on an Arabidopsis association model. The expressional profiles indicated major involvement of MAPKKK genes from tea in response to various abiotic stress factors. Taken together, this study provides the targets for additional inclusive identification, functional study, and provides comprehensive knowledge for a better understanding of the MAPKKK cascade regulatory network in C. sinensis.

scholarly journals Genome-Wide Identification and Analysis of Expression Profiles of Maize Mitogen-Activated Protein Kinase Kinase Kinase

PLoS ONE ◽  
2013 ◽  
Vol 8 (2) ◽  
pp. e57714 ◽  
Author(s):  
Xiangpei Kong ◽  
Wei Lv ◽  
Dan Zhang ◽  
Shanshan Jiang ◽  
Shizhong Zhang ◽  
...  
Keyword(s):  
Protein Kinase ◽  
Expression Profiles ◽  
Mitogen Activated Protein Kinase ◽  
Genome Wide ◽  
Mitogen Activated Protein ◽  
Protein Kinase Kinase
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