scholarly journals Genome-Wide Identification and Expression Profiling of Tomato Hsp20 Gene Family in Response to Biotic and Abiotic Stresses

2016 ◽  
Vol 7 ◽  
Author(s):  
Jiahong Yu ◽  
Yuan Cheng ◽  
Kun Feng ◽  
Meiying Ruan ◽  
Qingjing Ye ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Profiling ◽  
Abiotic Stresses ◽  
Biotic And Abiotic Stresses ◽  
Genome Wide ◽  
Hsp20 Gene Family

scholarly journals Genome-wide identification and expression profiling of trihelix gene family under abiotic stresses in wheat

BMC Genomics ◽  
2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Jie Xiao ◽  
Rui Hu ◽  
Ting Gu ◽  
Jiapeng Han ◽  
Ding Qiu ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Profiling ◽  
Abiotic Stresses ◽  
Genome Wide

Genome-Wide Identification and Expression Profiling of the ERF Gene Family in Medicago sativa L. Under Various Abiotic Stresses

2019 ◽  
Vol 38 (10) ◽  
pp. 1056-1068 ◽  
Author(s):  
Xiaoyu Jin ◽  
Xiaofan Yin ◽  
Boniface Ndayambaza ◽  
Zhengshe Zhang ◽  
Xueyang Min ◽  
...  
Keyword(s):  
Gene Family ◽  
Medicago Sativa ◽  
Expression Profiling ◽  
Abiotic Stresses ◽  
Genome Wide ◽  
Medicago Sativa L

scholarly journals Expression Profiling of the Dof Gene Family Under Abiotic Stresses in Spinach

2021 ◽  
Author(s):  
Hongying Yu ◽  
Yaying Ma ◽  
Yijing Lu ◽  
Jingjing Yue ◽  
Ray Ming
Keyword(s):  
Transcription Factors ◽  
Gene Family ◽  
Stress Responses ◽  
Expression Profiling ◽  
Abiotic Stresses ◽  
Specific Expression ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
A Genome ◽  
Male Flowers

Abstract DNA-binding with one finger (Dof) transcription factors are plant-specific transcription factors involved in numerous pathways of plant development, especially in respond to abiotic stresses. Although genome-wide analysis of this gene family has been performed in many species, Dof genes in spinach have not been thoroughly analyzed. We performed a genome-wide analysis and characterization of Dof gene family in spinach. Twenty two Dof genes were identified and classified into four groups with nine subgroups, which was further corroborated by gene structure and motif analyses. Ka/Ks analysis revealed that SoDofs were subjected to purify selection. Using Cis-acting elements analysis, SoDofs were involved in plant growth and development, plant hormones and stress responses. Expression profiling demonstrated that SoDofs expressed in leaf and inflorescence, and responded to cold, heat, and drought stresses. SoDof22 expressed the highest level in male flowers and under cold stress. These results provided a genome-wide analysis of SoDof genes, their gender- and tissue-specific expression, and response to abiotic stresses. The knowledge and resources gained from these analyses will benefit spinach improvement.

scholarly journals Expression profiling of the Dof gene family under abiotic stresses in spinach

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Hongying Yu ◽  
Yaying Ma ◽  
Yijing Lu ◽  
Jingjing Yue ◽  
Ray Ming
Keyword(s):  
Gene Family ◽  
Stress Responses ◽  
Expression Profiling ◽  
Abiotic Stresses ◽  
Spinacia Oleracea ◽  
Purifying Selection ◽  
Specific Expression ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
A Genome

AbstractDNA-binding with one finger (Dof) are plant-specific transcription factors involved in numerous pathways of plant development, such as abiotic stresses responses. Although genome-wide analysis of Dof genes has been performed in many species, but these genes in spinach have not been analyzed yet. We performed a genome-wide analysis and characterization of Dof gene family in spinach (Spinacia oleracea L.). Twenty-two Dof genes were identified and classified into four groups with nine subgroups, which was further corroborated by gene structure and motif analyses. Ka/Ks analysis revealed that SoDofs were subjected to purifying selection. Using cis-acting elements analysis, SoDofs were involved in plant growth and development, plant hormones, and stress responses. Expression profiling demonstrated that SoDofs expressed in leaf and inflorescence, and responded to cold, heat, and drought stresses. SoDof22 expressed the highest level in male flowers and under cold stress. These results provided a genome-wide analysis of SoDof genes, their gender- and tissue-specific expression, and response to abiotic stresses. The knowledge and resources gained from these analyses will benefit spinach improvement.

scholarly journals Genome-wide characterization of a SRO gene family involved in response to biotic and abiotic stresses in banana (Musa spp.)

2019 ◽  
Vol 19 (1) ◽  
Author(s):  
Lu Zhang ◽  
Dengbo Zhou ◽  
Huigang Hu ◽  
Weiming Li ◽  
Yulin Hu ◽  
...  
Keyword(s):  
Gene Family ◽  
Abiotic Stresses ◽  
Biotic And Abiotic Stresses ◽  
Musa Spp ◽  
Genome Wide

scholarly journals Genome-wide identification and expression analysis of the plant specific LIM genes in Gossypium arboreum under phytohormone, salt and pathogen stress

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
K. P. Raghavendra ◽  
J. Das ◽  
R. Kumar ◽  
S. P. Gawande ◽  
H. B. Santosh ◽  
...  
Keyword(s):  
Gene Family ◽  
Abiotic Stresses ◽  
Expression Patterns ◽  
Gossypium Arboreum ◽  
Variable Response ◽  
Lim Domain ◽  
Biotic And Abiotic Stresses ◽  
Climate Resilience ◽  
Lim Domains ◽  
Genome Wide

AbstractAsiatic cotton (Gossypium arboreum) cultivated as ‘desicotton’ in India, is renowned for its climate resilience and robustness against biotic and abiotic stresses. The genome ofG. arboreumis therefore, considered as a valued reserve of information for discovering novel genes or gene functions for trait improvements in the present context of cotton cultivation world-wide. In the present study, we carried out genome-wide analysis ofLIMgene family in desi cotton and identified twenty LIM domain proteins (GaLIMs) which include sixteen animals CRP-like GaLIMs and four plant specific GaLIMs with presence (GaDA1) or absence (GaDAR) of UIM (Ubiquitin Interacting Motifs). Among the sixteen CRP-like GaLIMs, eleven had two conventional LIM domains while, five had single LIM domain which was not reported inLIMgene family of the plant species studied, except inBrassica rapa.Phylogenetic analysis of these twenty GaLIM proteins in comparison with LIMs of Arabidopsis, chickpea and poplar categorized them into distinct αLIM1, βLIM1, γLIM2, δLIM2 groups in CRP-like LIMs, and GaDA1 and GaDAR in plant specific LIMs group. Domain analysis had revealed consensus [(C-X2-C-X17-H-X2-C)-X2-(C-X2-C-X17-C-X2-H)] and [(C-X2-C-X17-H-X2-C)-X2-(C-X4-C-X15-C-X2-H)] being conserved as first and/or second LIM domains of animal CRP-like GaLIMs, respectively. Interestingly, single LIM domain containing GaLIM15 was found to contain unique consensus with longer inter-zinc-motif spacer but shorter second zinc finger motif. All twentyGaLIMsshowed variable spatio-temporal expression patterns and accordingly further categorized into distinct groups of αLIM1, βLIM1, γLIM2 δLIM2 and plant specific LIM (DA1/DAR). For the first time, response ofGaDA1/DARunder the influence of biotic and abiotic stresses were studied in cotton, involving treatments with phytohormones (Jasmonic acid and Abscisic acid), salt (NaCl) and wilt causing pathogen (Fusarium oxysporum). Expressions patterns ofGaDA1/DARshowed variable response and identifiedGaDA2as a probable candidate gene for stress tolerance inG. arboreum.

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