scholarly journals Interpreting Whole-Genome Sequence Analyses of Foodborne Bacteria for Regulatory Applications and Outbreak Investigations

2018 ◽  
Vol 9 ◽  
Author(s):  
Arthur W. Pightling ◽  
James B. Pettengill ◽  
Yan Luo ◽  
Joseph D. Baugher ◽  
Hugh Rand ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Sequence Analyses ◽  
Foodborne Bacteria ◽  
Outbreak Investigations

scholarly journals Comprehensive whole genome sequence analyses yields novel genetic and structural insights for Intellectual Disability

BMC Genomics ◽  
2017 ◽  
Vol 18 (1) ◽  
Author(s):  
Farah R. Zahir ◽  
Jill C. Mwenifumbo ◽  
Hye-Jung E. Chun ◽  
Emilia L. Lim ◽  
Clara D. M. Van Karnebeek ◽  
...  
Keyword(s):  
Intellectual Disability ◽  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Sequence Analyses ◽  
Structural Insights

scholarly journals Investigating the Virulence Potential of E. coli Isolates Obtained from Cocoa Beans, Using Whole Genome Sequence Analyses

2019 ◽  
Vol 33 (S1) ◽  
Author(s):  
Hephzibah Nwanosike ◽  
Taejung Chung ◽  
Megan A. Condello ◽  
Lingzi Xiaoli ◽  
Regina Lamendella ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Sequence Analyses ◽  
Cocoa Beans ◽  
E Coli ◽  
Virulence Potential

scholarly journals Lactobacillus paragasseri sp. nov., a sister taxon of Lactobacillus gasseri, based on whole-genome sequence analyses

2018 ◽  
Vol 68 (11) ◽  
pp. 3512-3517 ◽  
Author(s):  
Yasuhiro Tanizawa ◽  
Ipputa Tada ◽  
Hisami Kobayashi ◽  
Akihito Endo ◽  
Shintaro Maeno ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Sister Taxon ◽  
Whole Genome ◽  
Sequence Analyses ◽  
Lactobacillus Gasseri

scholarly journals Whole-genome sequence analyses of Fusobacterium necrophorum

2019 ◽  
Vol 1 (1A) ◽  
Author(s):  
Lesley Hoyles ◽  
Karima Brimah ◽  
Pamela Greenwell
Keyword(s):  
Genome Sequence ◽  
Fusobacterium Necrophorum ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Sequence Analyses

Cloning of the cycloisomaltotetraose forming-enzymes using whole genome sequence analyses of Agreia sp. D1110 and Microbacterium trichothecenolyticum D2006

2021 ◽  
Author(s):  
Akihiro Fujita ◽  
Akira Kawashima ◽  
Yuji Noguchi ◽  
Shuichi Hirose ◽  
Noriaki Kitagawa ◽  
...  
Keyword(s):  
Amino Acid ◽  
Genome Sequence ◽  
Draft Genome ◽  
Amino Acid Sequences ◽  
Whole Genome Sequence ◽  
Glycoside Hydrolase Family ◽  
Carbohydrate Binding ◽  
Whole Genome ◽  
Sequence Analyses ◽  
Terminal Amino

Abstract We performed whole genome sequence analyses of Agreia sp. D1110 and Microbacterium trichothecenolyticum D2006 that secrete enzymes to produce cyclo-{→6)-α-d-Glcp-(1→6)-α-d-Glcp-(1→6)-α-d-Glcp-(1→6)-α-d-Glcp-(1→} (CI4) from dextran. Full-length amino acid sequences of CI4-forming enzymes were identified by matching known N-terminal amino acid sequences with products of the draft genome. Domain searches revealed that the CI4-forming enzymes are composed of Glycoside Hydrolase family 66 (GH66) domain, Carbohydrate Binding Module family 35 (CBM35) domain and CBM13 domain, categorizing the CI4-forming enzymes in the GH66. Furthermore, the amino acid sequences of the two CI4-forming enzymes were 71% similar to each other and up to 51% similar to cycloisomaltooligosaccharide glucanotransferases (CITases) categorized in GH66. Differences in sequence between the CI4-forming enzymes and the CITases suggest mechanisms to produce specific cycloisomaltooligosaccharides, and whole genome sequence analyses identified a gene cluster whose gene products likely work in concert with the CI4-forming enzymes.

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