scholarly journals The Human Virome Protein Cluster Database (HVPC): A Human Viral Metagenomic Database for Diversity and Function Annotation

2018 ◽  
Vol 9 ◽  
Author(s):  
Ali H. A. Elbehery ◽  
Judith Feichtmayer ◽  
Dave Singh ◽  
Christian Griebler ◽  
Li Deng
Keyword(s):  
Function Annotation ◽  
Protein Cluster ◽  
And Function ◽  
Cluster Database

Identification and function annotation of long intervening noncoding RNAs

2016 ◽  
pp. bbw046 ◽  
Author(s):  
Haitao Luo ◽  
Dechao Bu ◽  
Liang Sun ◽  
Shuangsang Fang ◽  
Zhiyong Liu ◽  
...  
Keyword(s):  
Noncoding Rnas ◽  
Function Annotation ◽  
And Function

scholarly journals Analysis of Ficus hirta Fig Endosymbionts Diversity and Species Composition

Diversity ◽  
2021 ◽  
Vol 13 (12) ◽  
pp. 636
Author(s):  
Yifeng Liu ◽  
Songle Fan ◽  
Hui Yu
Keyword(s):  
High Throughput Sequencing ◽  
Biological Database ◽  
Fig Wasp ◽  
Fig Wasps ◽  
Function Annotation ◽  
History Of ◽  
Ficus Hirta ◽  
Bacteria And Fungi ◽  
And Function ◽  
Confined Environment

Endosymbionts living in plants and insects are pervasive. Ficus (Moraceae) has very special inflorescences (which we also call figs) enclosed like an urn, and such inflorescence is usually parasitized by fig wasps. Ficus breeds fig wasp larvae in its figs and adult fig wasps pollinate for Ficus, Ficus and its obligated pollinator formed fig-fig wasp mutualism. Previous studies have found that this confined environment in figs may have provided protection for fig wasps and that this has left some imprints on the genome of fig wasps during the coevolution history of figs and fig wasps. Research on the diversity of both bacteria and fungi in figs are fewer. Our study explored the diversity of endosymbionts in Ficus hirta figs. We utilized high-throughput sequencing and biological database to identify the specific microorganism in figs, then conducted microorganism communities’ diversity analysis and function annotation analysis. As a result, we identified the dominant endosymbionts in figs, mainly some insect internal parasitic bacteria and fungi, plant pathogen, endophytes, and saprotroph. Then we also found bacteria in Ficus hirta figs were more diversified than fungi, and bacteria communities in female figs and functional male figs were different. These findings may give us more insight into the coevolution and interaction among endosymbiont, fig, and fig wasp.

scholarly journals Advances in long noncoding RNAs: identification, structure prediction and function annotation

2015 ◽  
Vol 15 (1) ◽  
pp. 38-46 ◽  
Author(s):  
Xingli Guo ◽  
Lin Gao ◽  
Yu Wang ◽  
David K. Y. Chiu ◽  
Tong Wang ◽  
...  
Keyword(s):  
Structure Prediction ◽  
Noncoding Rnas ◽  
Long Noncoding Rnas ◽  
Function Annotation ◽  
And Function

scholarly journals In silico sequence analysis, homology modeling and function annotation of leishmanolysin from Leishmania donovani

2015 ◽  
Vol 40 (4) ◽  
pp. 1266-1269 ◽  
Author(s):  
Somnath Waghmare ◽  
Abhishek Buxi ◽  
Yogesh Nandurkar ◽  
Anil Shelke ◽  
Ramrao Chavan
Keyword(s):  
Sequence Analysis ◽  
Homology Modeling ◽  
In Silico ◽  
Leishmania Donovani ◽  
Function Annotation ◽  
And Function

scholarly journals The Arabidopsis Information Resource (TAIR): gene structure and function annotation

2007 ◽  
Vol 36 (Database) ◽  
pp. D1009-D1014 ◽  
Author(s):  
D. Swarbreck ◽  
C. Wilks ◽  
P. Lamesch ◽  
T. Z. Berardini ◽  
M. Garcia-Hernandez ◽  
...  
Keyword(s):  
Gene Structure ◽  
Structure And Function ◽  
Information Resource ◽  
Function Annotation ◽  
Arabidopsis Information Resource ◽  
And Function
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